Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G229600 Miscanthus sinensis HOM05M008072 ORTHO05M010231 1.6e-121 438.7 228 100.0
Misin07G433400 Miscanthus sinensis HOM05M008072 ORTHO05M010231 1.2e-116 422.5 228 97.4
Sspon.04G0006860-2D Saccharum spontaneum HOM05M008072 ORTHO05M010231 5.8e-116 420.2 226 97.3
Sobic.004G293400 Sorghum bicolor HOM05M008072 ORTHO05M010231 5.8e-116 420.2 229 97.4
Zm00001eb249700 Zea mays B73 HOM05M008072 ORTHO05M010231 4.2e-114 414.1 228 95.2
Zm00007a00020063 Zea mays B104 HOM05M008072 ORTHO05M010231 1.2e-113 412.5 225 95.6
Pahal.1G336500 Panicum hallii HOM05M008072 ORTHO05M010231 8.1e-110 399.8 228 92.1
Seita.1G262100 Setaria italica HOM05M008072 ORTHO05M010231 3.1e-109 397.9 228 91.2
Sevir.1G266600 Setaria viridis HOM05M008072 ORTHO05M010231 3.1e-109 397.9 228 91.2
Dexi1A01G0022450 Digitaria exilis HOM05M008072 ORTHO05M010231 9.9e-108 392.9 228 90.8
EJB05_20471 Eragrostis curvula HOM05M008072 ORTHO05M010231 2.1e-105 385.2 226 89.4
PH02Gene28525 Phyllostachys edulis HOM05M008072 ORTHO05M010231 1.0e-104 382.9 226 88.1
Ot_Chr1_g21229 Oropetium thomaeum HOM05M008072 ORTHO05M010231 1.8e-104 382.1 225 86.7
EJB05_20469 Eragrostis curvula HOM05M008072 ORTHO05M010231 1.5e-103 379.0 221 89.6
Bradi3g50820 Brachypodium distachyon HOM05M008072 ORTHO05M010231 4.3e-103 377.5 226 86.7
GWHGAZTO019919 Oryza alta HOM05M008072 ORTHO05M010231 5.6e-103 377.1 229 86.0
GWHGAORA060122 Cenchrus purpureus HOM05M008072 ORTHO05M010231 1.6e-102 375.6 226 88.9
Zjn_sc00007.1.g10090.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M008072 ORTHO05M010231 1.1e-101 372.9 213 90.6
GWHGASIY032492 Secale cereale HOM05M008072 ORTHO05M010231 2.4e-101 371.7 226 85.0
TraesCS6A03G0673700 Triticum aestivum HOM05M008072 ORTHO05M010231 3.1e-101 371.3 226 84.5
TRITD6Av1G158100 Triticum turgidum HOM05M008072 ORTHO05M010231 3.1e-101 371.3 226 84.5
TraesCS6B03G0802000 Triticum aestivum HOM05M008072 ORTHO05M010231 5.3e-101 370.5 226 84.5
AET6Gv20644300 Aegilops tauschii HOM05M008072 ORTHO05M010231 1.3e-99 365.9 226 84.1
TraesCS6D03G0564300 Triticum aestivum HOM05M008072 ORTHO05M010231 1.3e-99 365.9 226 84.1
GWHGAZTO071578 Oryza alta HOM05M008072 ORTHO05M010231 1.7e-99 365.5 218 84.9
Sspon.04G0006860-1A Saccharum spontaneum HOM05M008072 ORTHO05M010231 9.3e-98 359.8 192 98.4
Os02g0661300 Oryza sativa ssp. japonica HOM05M008072 ORTHO05M010231 2.9e-91 338.2 233 77.7
Horvu_MOREX_6H01G376100 Hordeum vulgare HOM05M008072 ORTHO05M010231 3.8e-91 337.8 207 84.5
OsKitaake02g276200 Oryza sativa Kitaake HOM05M008072 ORTHO05M010231 3.2e-90 334.7 231 77.1
OsR498G0204465000.01 Oryza sativa ssp. indica HOM05M008072 ORTHO05M010231 5.3e-85 317.4 209 79.4
PH02Gene20326 Phyllostachys edulis HOM05M008072 ORTHO05M010231 5.4e-45 184.5 226 51.8
p5.00_sc00023_p0003 Elaeis guineensis HOM05M008072 ORTHO05M010231 4.4e-39 164.9 272 40.4
CALSI_Maker00009045 Calamus simplicifolius HOM05M008072 ORTHO05M010231 1.4e-37 159.8 268 38.4
OB02G34020 Oryza brachyantha HOM05M008072 ORTHO05M010231 3.2e-37 158.7 94 87.2
Sevir.3G177300 Setaria viridis HOM05M008072 ORTHO05M010231 1.6e-36 156.4 125 72.0
Aco011729 Ananas comosus HOM05M008072 ORTHO05M010231 3.1e-32 142.1 219 43.4
Solyc08g079050.2 Solanum lycopersicum HOM05M008072 ORTHO05M010231 4.9e-30 134.8 252 36.5
Glyma.15G182700 Glycine max HOM05M008072 ORTHO05M010231 7.0e-29 131.0 272 32.7
HPP92_025603 Vanilla planifolia HOM05M008072 ORTHO05M010231 1.2e-28 130.2 259 37.5
Potri.001G120700 Populus trichocarpa HOM05M008072 ORTHO05M010231 1.9e-26 122.9 248 34.7
TRIDC6AG038240 Triticum dicoccoides HOM05M008072 ORTHO05M010231 2.5e-26 122.5 75 84.0
Spipo13G0036900 Spirodela polyrhiza HOM05M008072 ORTHO05M010231 1.2e-25 120.2 279 31.5
HPP92_025643 Vanilla planifolia HOM05M008072 ORTHO05M010231 1.2e-25 120.2 240 36.2
TRIDC6BG045250 Triticum dicoccoides HOM05M008072 ORTHO05M010231 1.6e-25 119.8 70 87.1
AT4G22600 Arabidopsis thaliana HOM05M008072 ORTHO05M010231 1.7e-22 109.8 255 31.8
Zm00001eb319230 Zea mays B73 HOM05M008072 ORTHO05M010231 4.6e-20 101.7 95 62.1
Zm00007a00044507 Zea mays B104 HOM05M008072 ORTHO05M010231 1.8e-16 89.7 55 81.8
OB01G43290 Oryza brachyantha HOM05M008072 ORTHO05M010231 1.7e-14 83.2 53 75.5


User provided reference genes

Program Settings