Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin07G408700 Miscanthus sinensis HOM05M005504 ORTHO05M006521 2.8e-31 137.1 65 100.0
Misin08G202500 Miscanthus sinensis HOM05M005504 ORTHO05M006521 2.8e-31 137.1 65 100.0
Misin04G099400 Miscanthus sinensis HOM05M005504 ORTHO05M006521 6.2e-31 136.0 65 98.5
Sspon.05G0003410-1A Saccharum spontaneum HOM05M005504 ORTHO05M006521 8.2e-31 135.6 65 98.5
GWHGAORA019979 Cenchrus purpureus HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
EJB05_20749 Eragrostis curvula HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
Ot_Chr1_gn30770 Oropetium thomaeum HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
Ot_Chr1_gn31603 Oropetium thomaeum HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
Ot_Chr1_gn31604 Oropetium thomaeum HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
OB02G31630 Oryza brachyantha HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
OsKitaake02g249400 Oryza sativa Kitaake HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
OsR498G0204328000.01 Oryza sativa ssp. indica HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
Os02g0618250 Oryza sativa ssp. japonica HOM05M005504 ORTHO05M006521 1.8e-30 134.4 65 96.9
Sobic.004G216800 Sorghum bicolor HOM05M005504 ORTHO05M006521 3.1e-30 133.7 65 96.9
MisinT093400 Miscanthus sinensis HOM05M005504 ORTHO05M006521 4.0e-30 133.3 65 95.4
PH02Gene23132 Phyllostachys edulis HOM05M005504 ORTHO05M006521 6.9e-30 132.5 65 96.9
PH02Gene24503 Phyllostachys edulis HOM05M005504 ORTHO05M006521 6.9e-30 132.5 65 96.9
Zm00007a00045951 Zea mays B104 HOM05M005504 ORTHO05M006521 6.9e-30 132.5 65 95.4
Misin12G226800 Miscanthus sinensis HOM05M005504 ORTHO05M006521 9.0e-30 132.1 65 95.4
Misin12G230100 Miscanthus sinensis HOM05M005504 ORTHO05M006521 9.0e-30 132.1 65 95.4
GWHGAZTO019525 Oryza alta HOM05M005504 ORTHO05M006521 9.0e-30 132.1 64 95.3
GWHGAZTO071196 Oryza alta HOM05M005504 ORTHO05M006521 9.0e-30 132.1 64 95.3
Sobic.006G226500 Sorghum bicolor HOM05M005504 ORTHO05M006521 9.0e-30 132.1 65 95.4
Misin04G038300 Miscanthus sinensis HOM05M005504 ORTHO05M006521 1.2e-29 131.7 65 96.9
Pahal.1G309300 Panicum hallii HOM05M005504 ORTHO05M006521 1.5e-29 131.3 65 95.4
PH02Gene18683 Phyllostachys edulis HOM05M005504 ORTHO05M006521 2.0e-29 131.0 65 95.4
Sspon.05G0003410-2D Saccharum spontaneum HOM05M005504 ORTHO05M006521 2.6e-29 130.6 65 96.9
Zjn_sc00007.1.g12220.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005504 ORTHO05M006521 2.6e-29 130.6 65 95.4
GWHGAORA050588 Cenchrus purpureus HOM05M005504 ORTHO05M006521 5.8e-29 129.4 65 93.8
Seita.1G236300 Setaria italica HOM05M005504 ORTHO05M006521 5.8e-29 129.4 65 93.8
Seita.9G057400 Setaria italica HOM05M005504 ORTHO05M006521 5.8e-29 129.4 65 93.8
Sevir.1G241200 Setaria viridis HOM05M005504 ORTHO05M006521 5.8e-29 129.4 65 93.8
Sevir.9G056800 Setaria viridis HOM05M005504 ORTHO05M006521 5.8e-29 129.4 65 93.8
Bradi3g48883 Brachypodium distachyon HOM05M005504 ORTHO05M006521 1.3e-28 128.3 65 93.8
TraesCS6B03G0747400 Triticum aestivum HOM05M005504 ORTHO05M006521 1.3e-28 128.3 65 93.8
TraesCS6D03G0514800 Triticum aestivum HOM05M005504 ORTHO05M006521 1.3e-28 128.3 65 93.8
TRIDC6BG041460 Triticum dicoccoides HOM05M005504 ORTHO05M006521 1.3e-28 128.3 65 93.8
TRITD6Bv1G133080 Triticum turgidum HOM05M005504 ORTHO05M006521 1.3e-28 128.3 65 93.8
GWHGAORA059837 Cenchrus purpureus HOM05M005504 ORTHO05M006521 2.9e-28 127.1 65 92.3
GWHGAORA059868 Cenchrus purpureus HOM05M005504 ORTHO05M006521 2.9e-28 127.1 65 92.3
GWHGASIY032165 Secale cereale HOM05M005504 ORTHO05M006521 3.8e-28 126.7 65 92.3
TRIDC6AG034730 Triticum dicoccoides HOM05M005504 ORTHO05M006521 3.8e-28 126.7 65 90.8
CALSI_Maker00032017 Calamus simplicifolius HOM05M005504 ORTHO05M006521 4.9e-28 126.3 65 92.3
V3.Lp_chr6_0G18658 Lolium perenne HOM05M005504 ORTHO05M006521 6.5e-28 125.9 65 90.8
Glyma.03G164500 Glycine max HOM05M005504 ORTHO05M006521 8.4e-28 125.6 65 89.2
Glyma.19G165900 Glycine max HOM05M005504 ORTHO05M006521 8.4e-28 125.6 65 89.2
Ma01_g13850 Musa acuminata HOM05M005504 ORTHO05M006521 1.4e-27 124.8 65 90.8
TraesCS6A03G0626900 Triticum aestivum HOM05M005504 ORTHO05M006521 1.4e-27 124.8 65 89.2
TRITD6Av1G146330 Triticum turgidum HOM05M005504 ORTHO05M006521 1.4e-27 124.8 65 89.2
Ma01_g04620 Musa acuminata HOM05M005504 ORTHO05M006521 7.1e-27 122.5 65 87.7
Spipo11G0063400 Spirodela polyrhiza HOM05M005504 ORTHO05M006521 9.3e-27 122.1 65 87.7
Potri.005G226300 Populus trichocarpa HOM05M005504 ORTHO05M006521 1.6e-26 121.3 65 87.7
Aco010126 Ananas comosus HOM05M005504 ORTHO05M006521 2.7e-26 120.6 63 87.3
Solyc09g066500.4 Solanum lycopersicum HOM05M005504 ORTHO05M006521 2.7e-26 120.6 65 87.7
Potri.002G036500 Populus trichocarpa HOM05M005504 ORTHO05M006521 4.6e-26 119.8 65 87.7
HPP92_023430 Vanilla planifolia HOM05M005504 ORTHO05M006521 7.9e-26 119.0 65 84.6
DDU088G0002 Dioscorea dumetorum HOM05M000103 ORTHO05M002732 5.1e-25 116.3 60 90.0
Zm00007a00029397 Zea mays B104 HOM05M005504 ORTHO05M006521 6.7e-25 115.9 88 69.3
CDE03G0454 Ceratophyllum demersum HOM05M005504 ORTHO05M006521 1.1e-24 115.2 65 86.2
Asa7G07243 Allium sativum HOM05M005504 ORTHO05M006521 2.5e-24 114.0 65 83.1
MBI07_g16905_MAGBIO Magnolia biondii HOM05M005504 ORTHO05M006521 5.7e-24 112.8 61 86.9
AT2G20490 Arabidopsis thaliana HOM05M005504 ORTHO05M006521 2.8e-23 110.5 65 81.5
Zosma03g14970 Zostera marina HOM05M005504 ORTHO05M006521 1.1e-22 108.6 65 81.5
SEGI_26494 Sequoiadendron giganteum HOM05M005504 ORTHO05M006521 1.8e-22 107.8 65 80.0
AET6Gv20593400 Aegilops tauschii HOM05M005504 ORTHO05M006521 4.5e-21 103.2 52 92.3
Mapoly0081s0079 Marchantia polymorpha HOM05M005504 ORTHO05M006521 4.5e-21 103.2 65 73.8
MCO03G241 Micromonas commoda HOM05M005504 ORTHO05M006521 2.2e-20 100.9 63 71.4
SMO133G0019 Selaginella moellendorffii HOM05M005504 ORTHO05M006521 2.2e-20 100.9 65 69.2
Sspon.04G0032280-1C Saccharum spontaneum HOM05M005504 ORTHO05M006521 6.5e-20 99.4 66 81.8
Pp3c19_4700 Physcomitrium patens HOM05M005504 ORTHO05M006521 4.2e-19 96.7 65 69.2
Cre05.g237700 Chlamydomonas reinhardtii HOM05M005504 ORTHO05M006521 1.0e-17 92.0 63 65.1
PRCOL_00002782 Prasinoderma coloniale HOM05M005504 ORTHO05M006521 2.3e-17 90.9 65 64.6
Asa4G05606 Allium sativum HOM05M005504 ORTHO05M006521 5.9e-13 76.3 151 35.1
Sspon.04G0008300-2B Saccharum spontaneum HOM05M005504 ORTHO05M006521 6.5e-12 72.8 39 87.2
PH02Gene24512 Phyllostachys edulis HOM05M005504 ORTHO05M006521 1.9e-11 71.2 32 100.0
Sspon.04G0032280-2D Saccharum spontaneum HOM05M005504 ORTHO05M006521 7.2e-11 69.3 32 96.9
Zjn_sc00219.1.g00150.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005504 ORTHO05M006521 6.1e-10 66.2 34 94.1
Asa0G02123 Allium sativum HOM05M005504 ORTHO05M006521 4.4e-08 60.1 47 63.8
Dexi1A01G0020590 Digitaria exilis HOM05M005504 ORTHO05M006521 4.4e-08 60.1 57 57.9


User provided reference genes

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