Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G168300 Miscanthus sinensis HOM05M003787 ORTHO05M004823 1.4e-107 392.1 190 100.0
Misin07G357200 Miscanthus sinensis HOM05M003787 ORTHO05M004823 6.2e-87 323.6 164 95.1
Sspon.04G0010280-1A Saccharum spontaneum HOM05M003787 ORTHO05M004823 2.2e-84 315.1 164 93.3
Sspon.04G0010280-4D Saccharum spontaneum HOM05M003787 ORTHO05M004823 1.1e-83 312.8 164 92.7
Sobic.004G177300 Sorghum bicolor HOM05M003787 ORTHO05M004823 1.6e-82 308.9 156 94.9
Zm00001eb243840 Zea mays B73 HOM05M003787 ORTHO05M004823 2.8e-79 298.1 164 87.8
Zm00001eb182000 Zea mays B73 HOM05M003787 ORTHO05M004823 3.6e-79 297.7 164 87.8
Zm00007a00016677 Zea mays B104 HOM05M003787 ORTHO05M004823 3.6e-79 297.7 164 87.8
Sspon.04G0010280-2B Saccharum spontaneum HOM05M003787 ORTHO05M004823 6.2e-79 297.0 156 91.7
Zm00007a00029519 Zea mays B104 HOM05M003787 ORTHO05M004823 6.8e-78 293.5 165 87.3
Pahal.1G267200 Panicum hallii HOM05M003787 ORTHO05M004823 2.2e-76 288.5 164 84.1
EJB05_21282 Eragrostis curvula HOM05M003787 ORTHO05M004823 2.9e-76 288.1 163 84.0
Seita.1G193800 Setaria italica HOM05M003787 ORTHO05M004823 2.7e-74 281.6 164 81.7
Sevir.1G197800 Setaria viridis HOM05M003787 ORTHO05M004823 2.7e-74 281.6 164 81.7
GWHGAORA059421 Cenchrus purpureus HOM05M003787 ORTHO05M004823 6.6e-73 276.9 164 80.5
Ot_Chr1_g11452 Oropetium thomaeum HOM05M003787 ORTHO05M004823 6.6e-73 276.9 164 80.5
PH02Gene46379 Phyllostachys edulis HOM05M003787 ORTHO05M004823 1.1e-72 276.2 164 80.5
OsKitaake02g207300 Oryza sativa Kitaake HOM05M003787 ORTHO05M004823 3.3e-72 274.6 164 79.3
Os02g0556600 Oryza sativa ssp. japonica HOM05M003787 ORTHO05M004823 3.3e-72 274.6 164 79.3
GWHGAZTO070650 Oryza alta HOM05M003787 ORTHO05M004823 5.6e-72 273.9 164 79.3
Dexi1B01G0015920 Digitaria exilis HOM05M003787 ORTHO05M004823 1.6e-71 272.3 156 82.7
PH02Gene06232 Phyllostachys edulis HOM05M003787 ORTHO05M004823 6.2e-71 270.4 166 80.1
V3.Lp_chr6_0G9984 Lolium perenne HOM05M003787 ORTHO05M004823 6.9e-70 266.9 164 78.0
GWHGAZTO019026 Oryza alta HOM05M003787 ORTHO05M004823 2.0e-69 265.4 164 78.0
GWHGASIY031898 Secale cereale HOM05M003787 ORTHO05M004823 7.6e-69 263.5 164 76.2
Bradi3g45820 Brachypodium distachyon HOM05M003787 ORTHO05M004823 1.7e-68 262.3 163 77.9
Horvu_MOREX_6H01G274100 Hordeum vulgare HOM05M003787 ORTHO05M004823 2.9e-68 261.5 164 75.6
TraesCS6A03G0509600 Triticum aestivum HOM05M003787 ORTHO05M004823 8.4e-68 260.0 164 75.0
TraesCS6B03G0681100 Triticum aestivum HOM05M003787 ORTHO05M004823 8.4e-68 260.0 164 75.0
TraesCS6D03G0414600 Triticum aestivum HOM05M003787 ORTHO05M004823 8.4e-68 260.0 164 75.0
TRIDC6AG029500 Triticum dicoccoides HOM05M003787 ORTHO05M004823 8.4e-68 260.0 164 75.0
TRIDC6BG037630 Triticum dicoccoides HOM05M003787 ORTHO05M004823 8.4e-68 260.0 164 75.0
TRITD6Av1G105180 Triticum turgidum HOM05M003787 ORTHO05M004823 8.4e-68 260.0 164 75.0
TRITD6Bv1G115690 Triticum turgidum HOM05M003787 ORTHO05M004823 8.4e-68 260.0 164 75.0
p5.00_sc00045_p0059 Elaeis guineensis HOM05M003787 ORTHO05M004823 2.1e-63 245.4 163 70.6
Zjn_sc00017.1.g03100.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003787 ORTHO05M004823 2.1e-63 245.4 156 75.6
Ma09_g08060 Musa acuminata HOM05M003787 ORTHO05M004823 1.1e-62 243.0 163 68.7
Aco007957 Ananas comosus HOM05M003787 ORTHO05M004823 4.5e-61 237.7 164 67.7
PH02Gene39860 Phyllostachys edulis HOM05M003787 ORTHO05M004823 4.5e-61 237.7 159 72.3
DDU132G0015 Dioscorea dumetorum HOM05M003787 ORTHO05M004823 2.2e-60 235.3 163 66.3
DDU556G0044 Dioscorea dumetorum HOM05M003787 ORTHO05M004823 2.2e-60 235.3 163 66.3
CALSI_Maker00040066 Calamus simplicifolius HOM05M003787 ORTHO05M004823 1.9e-59 232.3 155 68.4
PH02Gene48234 Phyllostachys edulis HOM05M003787 ORTHO05M004823 6.7e-57 223.8 137 75.9
GWHGAORA024015 Cenchrus purpureus HOM05M003787 ORTHO05M004823 3.7e-55 218.0 128 82.0
MBI06_g32171_MAGBIO Magnolia biondii HOM05M003787 ORTHO05M004823 3.4e-53 211.5 144 68.8
Glyma.08G238500 Glycine max HOM05M003787 ORTHO05M004823 4.5e-53 211.1 140 70.0
Glyma.12G000900 Glycine max HOM05M003787 ORTHO05M004823 4.5e-53 211.1 156 65.4
CALSI_Maker00044057 Calamus simplicifolius HOM05M003787 ORTHO05M004823 5.8e-53 210.7 155 66.5
Spipo4G0071700 Spirodela polyrhiza HOM05M003787 ORTHO05M004823 1.3e-52 209.5 163 62.0
AT1G35470 Arabidopsis thaliana HOM05M003787 ORTHO05M004823 1.1e-51 206.5 147 67.3
HPP92_001193 Vanilla planifolia HOM05M003787 ORTHO05M004823 2.5e-51 205.3 163 58.9
PH02Gene26697 Phyllostachys edulis HOM05M003787 ORTHO05M004823 3.2e-51 204.9 130 73.1
Potri.013G108400 Populus trichocarpa HOM05M003787 ORTHO05M004823 9.3e-51 203.4 144 68.8
Solyc03g033380.3 Solanum lycopersicum HOM05M003787 ORTHO05M004823 1.2e-50 203.0 146 65.8
CALSI_Maker00049227 Calamus simplicifolius HOM05M003787 ORTHO05M004823 1.6e-50 202.6 161 60.2
p5.00_sc00051_p0109 Elaeis guineensis HOM05M003787 ORTHO05M004823 1.1e-48 196.4 161 59.0
OB02G28040 Oryza brachyantha HOM05M003787 ORTHO05M004823 1.5e-48 196.1 119 77.3
CDE02G3748 Ceratophyllum demersum HOM05M003787 ORTHO05M004823 7.4e-48 193.7 149 63.1
CDE08G1205 Ceratophyllum demersum HOM05M003787 ORTHO05M004823 9.6e-48 193.4 147 63.3
Zosma02g04470 Zostera marina HOM05M003787 ORTHO05M004823 6.2e-47 190.7 162 58.0
ATR1136G046 Amborella trichopoda HOM05M003787 ORTHO05M004823 1.4e-46 189.5 144 64.6
Sspon.04G0010280-3C Saccharum spontaneum HOM05M003787 ORTHO05M004823 1.4e-46 189.5 161 67.1
AT4G09340 Arabidopsis thaliana HOM05M003787 ORTHO05M004823 1.0e-44 183.3 144 57.6
Mapoly0002s0237 Marchantia polymorpha HOM05M003787 ORTHO05M004823 2.2e-44 182.2 156 55.1
PH02Gene33835 Phyllostachys edulis HOM05M003787 ORTHO05M004823 3.8e-44 181.4 132 65.9
Asa2G02352 Allium sativum HOM05M003787 ORTHO05M004823 2.7e-42 175.3 143 55.9
Dexi1A01G0017050 Digitaria exilis HOM05M003787 ORTHO05M004823 6.1e-42 174.1 107 82.2
Pp3c16_23970 Physcomitrium patens HOM05M003787 ORTHO05M004823 1.3e-41 172.9 141 59.6
Pp3c25_15350 Physcomitrium patens HOM05M003787 ORTHO05M004823 6.7e-41 170.6 141 57.4
Zjn_sc00020.1.g00960.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003787 ORTHO05M004823 5.7e-40 167.5 107 76.6
SMO236G0134 Selaginella moellendorffii HOM05M003787 ORTHO05M004823 1.3e-36 156.4 143 54.5
DDU879G0038 Dioscorea dumetorum HOM05M003787 ORTHO05M004823 5.0e-36 154.5 145 52.4
Cre09.g387801 Chlamydomonas reinhardtii HOM05M003787 ORTHO05M004823 5.3e-30 134.4 146 41.8
evm.TU.AsparagusV1_Unassigned.16.V1.1 Asparagus officinalis HOM05M003787 ORTHO05M004823 1.5e-29 132.9 87 67.8
PRCOL_00002342 Prasinoderma coloniale HOM05M003787 ORTHO05M004823 4.5e-29 131.3 128 46.1
SEGI_19081 Sequoiadendron giganteum HOM05M003787 ORTHO05M004823 9.4e-27 123.6 127 46.5
PH02Gene01694 Phyllostachys edulis HOM05M003787 ORTHO05M004823 1.5e-21 106.3 66 75.8
AT4G09200 Arabidopsis thaliana HOM05M003787 ORTHO05M004823 1.1e-19 100.1 150 40.7
AT4G09250 Arabidopsis thaliana HOM05M003787 ORTHO05M004823 1.1e-19 100.1 150 40.7
AT4G09310 Arabidopsis thaliana HOM05M003787 ORTHO05M004823 1.1e-19 100.1 150 40.7
Potri.019G080800 Populus trichocarpa HOM05M003787 ORTHO05M004823 3.2e-19 98.6 56 73.2
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05M003787 ORTHO05M010607 5.5e-19 97.8 136 38.2
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05M003787 ORTHO05M004823 1.2e-18 96.7 156 37.8
AET6Gv20486100 Aegilops tauschii HOM05M003787 ORTHO05M004823 2.7e-18 95.5 57 70.2
Pp3c19_1530 Physcomitrium patens HOM05M003787 ORTHO05M004823 1.0e-17 93.6 129 35.7
Cre01.g007150 Chlamydomonas reinhardtii HOM05M003787 ORTHO05M004823 2.0e-16 89.4 132 30.3
Misin08G165300 Miscanthus sinensis HOM05M003787 ORTHO05M004823 8.2e-15 84.0 41 92.7
CBR_g30766 Chara braunii HOM05M000008 ORTHO05M000015 7.0e-14 80.9 125 33.6
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05M004523 ORTHO05M006774 2.6e-13 79.0 125 35.2
SEGI_28086 Sequoiadendron giganteum HOM05M003787 ORTHO05M004823 2.9e-12 75.5 58 60.3
SEGI_33732 Sequoiadendron giganteum HOM05M003787 ORTHO05M004823 3.8e-12 75.1 57 52.6
TRIDC6BG025000 Triticum dicoccoides HOM05M003787 ORTHO05M020559 2.7e-10 68.9 46 69.6
TRIDC2BG022530 Triticum dicoccoides HOM05M027764 ORTHO05M020559 5.3e-06 54.7 39 64.1


User provided reference genes

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