Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G155100 Miscanthus sinensis HOM05M003253 ORTHO05M003869 7.8e-255 882.5 428 100.0
Misin07G349700 Miscanthus sinensis HOM05M003253 ORTHO05M003869 6.8e-251 869.4 428 98.1
Sspon.04G0025710-3D Saccharum spontaneum HOM05M003253 ORTHO05M003869 2.2e-249 864.4 428 98.1
Sobic.004G167200 Sorghum bicolor HOM05M003253 ORTHO05M003869 1.1e-248 862.1 428 97.2
Sevir.1G185300 Setaria viridis HOM05M003253 ORTHO05M003869 6.4e-241 836.3 426 94.1
Seita.1G182200 Setaria italica HOM05M003253 ORTHO05M003869 8.3e-241 835.9 426 93.9
Pahal.1G256100 Panicum hallii HOM05M003253 ORTHO05M003869 7.1e-240 832.8 426 93.9
GWHGAORA059325 Cenchrus purpureus HOM05M003253 ORTHO05M003869 1.3e-238 828.6 426 93.9
GWHGAORA023895 Cenchrus purpureus HOM05M003253 ORTHO05M003869 5.2e-235 816.6 426 92.5
EJB05_21434 Eragrostis curvula HOM05M003253 ORTHO05M003869 4.6e-231 803.5 426 89.7
EJB05_21443 Eragrostis curvula HOM05M003253 ORTHO05M003869 4.6e-231 803.5 426 89.7
GWHGAZTO018872 Oryza alta HOM05M003253 ORTHO05M003869 1.7e-225 785.0 428 87.9
OB02G27070 Oryza brachyantha HOM05M003253 ORTHO05M003869 1.9e-224 781.6 427 87.8
Ot_Chr1_g11365 Oropetium thomaeum HOM05M003253 ORTHO05M003869 2.1e-223 778.1 429 87.4
OsKitaake02g196400 Oryza sativa Kitaake HOM05M003253 ORTHO05M003869 4.6e-223 776.9 428 86.9
OsR498G0204007300.01 Oryza sativa ssp. indica HOM05M003253 ORTHO05M003869 4.6e-223 776.9 428 86.9
Dexi1B01G0014920 Digitaria exilis HOM05M003253 ORTHO05M003869 1.0e-222 775.8 398 94.0
Dexi1A01G0016060 Digitaria exilis HOM05M003253 ORTHO05M003869 8.7e-222 772.7 398 93.5
V3.Lp_chr6_0G10700 Lolium perenne HOM05M003253 ORTHO05M003869 1.5e-213 745.3 410 87.3
Sspon.04G0025710-2C Saccharum spontaneum HOM05M003253 ORTHO05M003869 1.9e-208 728.4 428 86.0
Sspon.04G0025710-1B Saccharum spontaneum HOM05M003253 ORTHO05M003869 1.9e-200 701.8 426 83.8
Aco007815 Ananas comosus HOM05M003253 ORTHO05M003869 1.0e-198 696.0 429 76.0
p5.00_sc00012_p0080 Elaeis guineensis HOM05M003253 ORTHO05M003869 1.3e-190 669.1 428 74.3
Horvu_MOREX_2H01G439200 Hordeum vulgare HOM05M003253 ORTHO05M003869 6.7e-190 666.8 427 74.2
GWHGASIY008748 Secale cereale HOM05M003253 ORTHO05M003869 1.1e-189 666.0 429 74.1
TraesCS2A03G0737300 Triticum aestivum HOM05M003253 ORTHO05M003869 4.3e-189 664.1 429 73.7
TraesCS2B03G0814100 Triticum aestivum HOM05M003253 ORTHO05M003869 7.4e-189 663.3 429 73.7
TraesCS2D03G0680500 Triticum aestivum HOM05M003253 ORTHO05M003869 9.7e-189 662.9 429 73.7
TRITD2Bv1G148430 Triticum turgidum HOM05M003253 ORTHO05M003869 2.2e-188 661.8 429 73.7
TRITD2Av1G179940 Triticum turgidum HOM05M003253 ORTHO05M003869 5.3e-187 657.1 436 72.5
Ma02_g08690 Musa acuminata HOM05M003253 ORTHO05M003869 9.1e-187 656.4 429 73.4
Pahal.7G140900 Panicum hallii HOM05M003253 ORTHO05M003869 9.1e-187 656.4 429 73.0
EJB05_52760 Eragrostis curvula HOM05M003253 ORTHO05M003869 1.1e-184 649.4 429 73.7
EJB05_38097 Eragrostis curvula HOM05M003253 ORTHO05M003869 1.6e-183 645.6 429 73.2
PH02Gene49860 Phyllostachys edulis HOM05M003253 ORTHO05M003869 1.6e-183 645.6 358 87.4
Sevir.7G099900 Setaria viridis HOM05M003253 ORTHO05M003869 3.9e-182 641.0 428 71.7
OsKitaake04g121500 Oryza sativa Kitaake HOM05M003253 ORTHO05M003869 5.1e-182 640.6 424 74.1
PH02Gene06198 Phyllostachys edulis HOM05M003253 ORTHO05M003869 5.7e-181 637.1 406 75.4
TRIDC2AG042790 Triticum dicoccoides HOM05M003253 ORTHO05M003869 2.4e-179 631.7 385 76.1
GWHGAZTO079145 Oryza alta HOM05M003253 ORTHO05M003869 5.3e-179 630.6 421 72.9
V3.Lp_chr2_0G15350 Lolium perenne HOM05M003253 ORTHO05M003869 9.1e-179 629.8 427 71.2
Ot_Chr6_g08660 Oropetium thomaeum HOM05M003253 ORTHO05M003869 1.5e-178 629.0 429 70.4
DDU879G0026 Dioscorea dumetorum HOM05M003253 ORTHO05M003869 7.7e-178 626.7 428 69.6
DDU892G0006 Dioscorea dumetorum HOM05M003253 ORTHO05M003869 7.7e-178 626.7 428 69.6
TRIDC2BG045860 Triticum dicoccoides HOM05M003253 ORTHO05M003869 1.3e-177 625.9 383 76.0
evm.TU.AsparagusV1_09.88.V1.1 Asparagus officinalis HOM05M003253 ORTHO05M003869 3.8e-177 624.4 427 70.3
evm.TU.AsparagusV1_02.823.V1.1 Asparagus officinalis HOM05M003253 ORTHO05M003869 5.0e-177 624.0 428 69.6
Spipo7G0036600 Spirodela polyrhiza HOM05M003253 ORTHO05M003869 8.5e-177 623.2 427 68.4
Asa5G03197 Allium sativum HOM05M003253 ORTHO05M003869 5.5e-176 620.5 428 68.7
HPP92_023061 Vanilla planifolia HOM05M003253 ORTHO05M003869 9.4e-176 619.8 427 66.5
ATR0820G255 Amborella trichopoda HOM05M003253 ORTHO05M003869 2.2e-172 608.6 428 69.6
Solyc11g068650.2 Solanum lycopersicum HOM05M003253 ORTHO05M003869 8.5e-169 596.7 434 66.1
Zjn_sc00020.1.g01710.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003253 ORTHO05M003869 1.5e-168 595.9 426 72.3
Zosma02g01860 Zostera marina HOM05M003253 ORTHO05M003869 2.5e-168 595.1 427 65.3
AET2Gv20670200 Aegilops tauschii HOM05M003253 ORTHO05M003869 2.1e-167 592.0 419 67.8
Potri.009G159900 Populus trichocarpa HOM05M003253 ORTHO05M003869 2.3e-166 588.6 427 67.0
Zm00007a00005042 Zea mays B104 HOM05M003253 ORTHO05M003869 1.3e-164 582.8 294 93.9
AT5G22350 Arabidopsis thaliana HOM05M003253 ORTHO05M003869 2.2e-164 582.0 431 62.9
Potri.004G197000 Populus trichocarpa HOM05M003253 ORTHO05M003869 7.7e-162 573.5 426 65.0
Zosma05g02700 Zostera marina HOM05M003253 ORTHO05M003869 1.9e-160 568.9 428 63.6
CDE06G2666 Ceratophyllum demersum HOM05M003253 ORTHO05M003869 9.4e-160 566.6 425 63.3
Bradi3g45040 Brachypodium distachyon HOM05M003253 ORTHO05M003869 1.2e-159 566.2 284 92.6
OB04G19180 Oryza brachyantha HOM05M003253 ORTHO05M003869 3.0e-158 561.6 427 66.3
Glyma.12G091500 Glycine max HOM05M003253 ORTHO05M003869 6.8e-158 560.5 426 62.9
Glyma.11G181700 Glycine max HOM05M003253 ORTHO05M003869 8.8e-158 560.1 426 62.4
SEGI_37149 Sequoiadendron giganteum HOM05M003253 ORTHO05M003869 9.8e-157 556.6 428 62.6
Glyma.12G186400 Glycine max HOM05M003253 ORTHO05M003869 1.4e-155 552.7 424 62.0
Glyma.13G315100 Glycine max HOM05M003253 ORTHO05M003869 1.3e-153 546.2 424 61.1
GWHGAORA061599 Cenchrus purpureus HOM05M003253 ORTHO05M003869 5.7e-149 530.8 427 62.1
GWHGAORA023067 Cenchrus purpureus HOM05M003253 ORTHO05M003869 1.7e-148 529.3 427 62.5
Glyma.03G198300 Glycine max HOM05M003253 ORTHO05M003869 2.4e-147 525.4 409 60.9
GWHGAORA059615 Cenchrus purpureus HOM05M003253 ORTHO05M003869 9.5e-144 513.5 428 59.8
Misin12G072000 Miscanthus sinensis HOM05M003253 ORTHO05M003869 3.4e-141 505.0 291 78.7
Mapoly0038s0050 Marchantia polymorpha HOM05M003253 ORTHO05M003869 3.7e-140 501.5 444 53.6
Sobic.006G072501 Sorghum bicolor HOM05M003253 ORTHO05M003869 7.0e-139 497.3 361 69.3
AagrBONN_evm.TU.Sc2ySwM_369.385 Anthoceros agrestis HOM05M003253 ORTHO05M003869 3.0e-137 491.9 431 53.6
SMO196G0287 Selaginella moellendorffii HOM05M003253 ORTHO05M003869 2.6e-133 478.8 430 55.8
Pp3c23_3410 Physcomitrium patens HOM05M003253 ORTHO05M003869 1.3e-132 476.5 447 51.9
PH02Gene49947 Phyllostachys edulis HOM05M003253 ORTHO05M003869 6.0e-130 467.6 267 86.5
AT5G06180 Arabidopsis thaliana HOM05M003253 ORTHO05M003869 1.3e-129 466.5 395 57.5
Os02g0535700 Oryza sativa ssp. japonica HOM05M003253 ORTHO05M003869 6.6e-129 464.2 284 81.0
Dexi7B01G0006910 Digitaria exilis HOM05M003253 ORTHO05M003869 1.6e-127 459.5 426 56.1
Dexi7A01G0006010 Digitaria exilis HOM05M003253 ORTHO05M003869 1.8e-126 456.1 426 56.1
Bradi5g09491 Brachypodium distachyon HOM05M003253 ORTHO05M003869 6.4e-124 447.6 308 72.4
Misin11G066100 Miscanthus sinensis HOM05M003253 ORTHO05M003869 8.3e-124 447.2 279 74.2
Dexi1B01G0015170 Digitaria exilis HOM05M003253 ORTHO05M003869 1.1e-118 430.3 406 57.6
Seita.7G092300 Setaria italica HOM05M003253 ORTHO05M003869 1.8e-118 429.5 308 70.8
CBR_g33922 Chara braunii HOM05M003253 ORTHO05M003869 1.3e-116 423.3 425 47.8
Sspon.05G0025980-2D Saccharum spontaneum HOM05M003253 ORTHO05M003869 7.8e-114 414.1 334 65.6
GWHGAZTO070479 Oryza alta HOM05M003253 ORTHO05M003869 1.2e-111 406.8 397 57.4
Solyc09g010320.3 Solanum lycopersicum HOM05M003253 ORTHO05M003869 1.5e-88 330.1 328 50.9
CDE07G1160 Ceratophyllum demersum HOM05M003253 ORTHO05M003869 7.4e-88 327.8 273 58.2
Pp3c20_13230 Physcomitrium patens HOM05M003253 ORTHO05M003869 1.4e-86 323.6 358 48.0
Potri.016G075500 Populus trichocarpa HOM05M003253 ORTHO05M003869 1.1e-80 303.9 245 62.4
Zm00001eb181500 Zea mays B73 HOM05M003253 ORTHO05M003869 1.2e-77 293.9 155 93.5
Os04g0414000 Oryza sativa ssp. japonica HOM05M003253 ORTHO05M003869 2.2e-76 289.7 222 67.6
Zm00007a00005040 Zea mays B104 HOM05M003253 ORTHO05M003869 2.6e-69 266.2 143 93.0
SEGI_06630 Sequoiadendron giganteum HOM05M003253 ORTHO05M003869 4.2e-67 258.8 158 70.3
Dexi1A01G0016270 Digitaria exilis HOM05M003253 ORTHO05M003869 7.7e-61 238.0 214 58.4
GWHGAZTO029467 Oryza alta HOM05M003253 ORTHO05M003869 5.0e-60 235.3 151 76.8
Sspon.05G0025980-1B Saccharum spontaneum HOM05M003253 ORTHO05M003869 9.4e-59 231.1 136 75.0
PH02Gene30784 Phyllostachys edulis HOM05M003253 ORTHO05M003869 4.0e-49 199.1 222 49.5
PH02Gene16847 Phyllostachys edulis HOM05M003253 ORTHO05M003869 6.3e-47 191.8 113 76.1
GWHGAORA050165 Cenchrus purpureus HOM05M003253 ORTHO05M003869 9.1e-46 188.0 108 75.0
PH02Gene17753 Phyllostachys edulis HOM05M003253 ORTHO05M003869 1.6e-45 187.2 93 87.1
Glyma.19G196202 Glycine max HOM05M003253 ORTHO05M003869 2.5e-43 179.9 113 69.9
OsR498G0408532700.01 Oryza sativa ssp. indica HOM05M003253 ORTHO05M003869 9.4e-43 177.9 132 67.4
Glyma.04G115600 Glycine max HOM05M003253 ORTHO05M003869 2.9e-28 129.8 79 65.8
Dexi1A01G0016280 Digitaria exilis HOM05M003253 ORTHO05M003869 4.0e-25 119.4 122 55.7
Zm00001eb140760 Zea mays B73 HOM05M007923 ORTHO05M016403 1.6e-13 80.9 39 92.3
Zm00001eb349350 Zea mays B73 HOM05M003498 ORTHO05M016403 1.6e-13 80.9 39 92.3
PH02Gene00012 Phyllostachys edulis HOM05M000043 ORTHO05M000020 2.5e-11 73.6 32 96.9
MCO13G096 Micromonas commoda HOM05M003253 ORTHO05M003869 7.3e-11 72.0 279 27.6
CALSI_Maker00024649 Calamus simplicifolius HOM05M003253 ORTHO05M003869 2.3e-09 67.0 66 59.1
Zjn_sc00006.1.g03780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002506 ORTHO05M003869 6.8e-09 65.5 65 58.5
Zm00007a00009677 Zea mays B104 HOM05M006120 ORTHO05M007526 1.5e-08 64.3 32 90.6
Zm00007a00035798 Zea mays B104 HOM05M003498 ORTHO05M003869 7.5e-08 62.0 32 87.5
Zm00007a00008323 Zea mays B104 HOM05M016148 ORTHO05M018139 1.7e-07 60.8 33 81.8
Zm00007a00029355 Zea mays B104 HOM05M003498 ORTHO05M016403 2.2e-07 60.5 32 81.2
Zm00007a00026638 Zea mays B104 HOM05M004343 ORTHO05M016403 2.9e-07 60.1 31 87.1
Seita.9G233600 Setaria italica HOM05M003253 ORTHO05M003869 4.1e-06 56.2 34 64.7


User provided reference genes

Program Settings