Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G152300 Miscanthus sinensis HOM05M003600 ORTHO05M004252 9.1e-108 392.9 208 100.0
Misin07G352200 Miscanthus sinensis HOM05M003600 ORTHO05M004252 5.2e-95 350.5 218 89.9
Sspon.04G0011140-1A Saccharum spontaneum HOM05M003600 ORTHO05M004252 3.7e-85 317.8 177 98.3
Sspon.04G0011140-2B Saccharum spontaneum HOM05M003600 ORTHO05M004252 3.7e-85 317.8 177 98.3
Sspon.04G0011140-4D Saccharum spontaneum HOM05M003600 ORTHO05M004252 3.7e-85 317.8 177 98.3
Sspon.04G0011140-3C Saccharum spontaneum HOM05M003600 ORTHO05M004252 1.5e-81 305.8 177 95.5
Zm00001eb242600 Zea mays B73 HOM05M003600 ORTHO05M004252 7.8e-75 283.5 172 93.6
Zm00007a00000063 Zea mays B104 HOM05M003600 ORTHO05M004252 7.8e-75 283.5 172 93.6
Pahal.1G252400 Panicum hallii HOM05M003600 ORTHO05M004252 4.7e-72 274.2 178 88.2
Dexi1B01G0014660 Digitaria exilis HOM05M003600 ORTHO05M004252 2.0e-70 268.9 179 86.6
Seita.1G178900 Setaria italica HOM05M003600 ORTHO05M004252 1.7e-69 265.8 181 86.2
Sevir.1G181800 Setaria viridis HOM05M003600 ORTHO05M004252 4.9e-69 264.2 181 85.6
GWHGAORA059294 Cenchrus purpureus HOM05M003600 ORTHO05M004252 3.2e-68 261.5 179 84.4
Ot_Chr1_g11331 Oropetium thomaeum HOM05M003600 ORTHO05M004252 2.0e-67 258.8 177 84.2
GWHGAORA023861 Cenchrus purpureus HOM05M003600 ORTHO05M004252 7.8e-67 256.9 180 83.3
Bradi3g44750 Brachypodium distachyon HOM05M003600 ORTHO05M004252 2.3e-63 245.4 177 78.5
Zjn_sc00017.1.g04200.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003600 ORTHO05M004252 2.6e-62 241.9 197 75.6
OB02G26650 Oryza brachyantha HOM05M003600 ORTHO05M004252 7.5e-62 240.4 184 75.0
EJB05_21486 Eragrostis curvula HOM05M003600 ORTHO05M004252 3.7e-61 238.0 177 80.2
V3.Lp_chr6_0G3932 Lolium perenne HOM05M003600 ORTHO05M004252 1.9e-60 235.7 177 75.7
Sobic.004G163600 Sorghum bicolor HOM05M003600 ORTHO05M004252 7.8e-59 230.3 181 77.3
OsR498G0203981400.01 Oryza sativa ssp. indica HOM05M003600 ORTHO05M004252 2.5e-57 225.3 141 87.2
Os02g0528100 Oryza sativa ssp. japonica HOM05M003600 ORTHO05M004252 2.5e-57 225.3 141 87.2
Dexi1A01G0015620 Digitaria exilis HOM05M003600 ORTHO05M004252 2.3e-55 218.8 166 77.1
GWHGAZTO018792 Oryza alta HOM05M001108 ORTHO05M001683 6.8e-55 217.2 135 88.1
Zjn_sc00006.1.g04170.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003600 ORTHO05M004252 1.9e-52 209.1 178 70.2
Ot_Chr6_g08693 Oropetium thomaeum HOM05M003600 ORTHO05M004252 7.1e-52 207.2 179 69.3
Sspon.05G0026000-2C Saccharum spontaneum HOM05M003600 ORTHO05M004252 1.6e-51 206.1 168 72.0
Dexi7A01G0005680 Digitaria exilis HOM05M003600 ORTHO05M004252 2.1e-51 205.7 175 69.7
Seita.7G088200 Setaria italica HOM05M003600 ORTHO05M004252 2.7e-51 205.3 173 69.9
Sevir.7G096000 Setaria viridis HOM05M003600 ORTHO05M004252 2.7e-51 205.3 173 69.9
Pahal.7G137800 Panicum hallii HOM05M003600 ORTHO05M004252 6.0e-51 204.1 177 68.4
PH02Gene38242 Phyllostachys edulis HOM05M003600 ORTHO05M004252 6.0e-51 204.1 168 71.4
Misin11G069800 Miscanthus sinensis HOM05M003600 ORTHO05M004252 7.8e-51 203.8 168 71.4
Sspon.05G0012050-1A Saccharum spontaneum HOM05M003600 ORTHO05M004252 7.8e-51 203.8 168 71.4
Misin12G068200 Miscanthus sinensis HOM05M003600 ORTHO05M004252 1.7e-50 202.6 168 70.8
Sspon.05G0012050-3D Saccharum spontaneum HOM05M003600 ORTHO05M004252 1.7e-50 202.6 168 70.8
Sobic.006G066500 Sorghum bicolor HOM05M003600 ORTHO05M004252 1.7e-50 202.6 168 70.8
Dexi7B01G0006590 Digitaria exilis HOM05M003600 ORTHO05M004252 2.3e-50 202.2 171 69.0
GWHGAORA023114 Cenchrus purpureus HOM05M003600 ORTHO05M004252 3.0e-50 201.8 174 69.5
V3.Lp_chr2_0G15250 Lolium perenne HOM05M003600 ORTHO05M004252 3.9e-50 201.4 172 68.0
Sspon.05G0012050-2B Saccharum spontaneum HOM05M003600 ORTHO05M004252 3.9e-50 201.4 168 70.2
Sspon.05G0026000-1B Saccharum spontaneum HOM05M003600 ORTHO05M004252 3.9e-50 201.4 169 71.6
OsR498G0408516600.01 Oryza sativa ssp. indica HOM05M003600 ORTHO05M004252 5.1e-50 201.1 139 79.9
Os04g0408600 Oryza sativa ssp. japonica HOM05M003600 ORTHO05M004252 5.1e-50 201.1 139 79.9
Zm00007a00002896 Zea mays B104 HOM05M003600 ORTHO05M004252 5.1e-50 201.1 153 74.5
EJB05_38131 Eragrostis curvula HOM05M003600 ORTHO05M004252 6.6e-50 200.7 167 70.1
GWHGAORA061564 Cenchrus purpureus HOM05M003600 ORTHO05M004252 8.6e-50 200.3 173 68.8
Horvu_MOREX_2H01G433500 Hordeum vulgare HOM05M003600 ORTHO05M004252 8.6e-50 200.3 175 65.7
GWHGASIY008807 Secale cereale HOM05M003600 ORTHO05M004252 8.6e-50 200.3 172 68.6
GWHGASIY008824 Secale cereale HOM05M003600 ORTHO05M004252 8.6e-50 200.3 172 68.6
AET2Gv20664100 Aegilops tauschii HOM05M003600 ORTHO05M004252 1.1e-49 199.9 175 66.9
TraesCS2A03G0730800 Triticum aestivum HOM05M003600 ORTHO05M004252 1.1e-49 199.9 175 66.9
TraesCS2D03G0673900 Triticum aestivum HOM05M003600 ORTHO05M004252 1.1e-49 199.9 175 66.9
TRIDC2AG042330 Triticum dicoccoides HOM05M003600 ORTHO05M004252 1.1e-49 199.9 175 66.9
OB04G18760 Oryza brachyantha HOM05M003600 ORTHO05M004252 1.9e-49 199.1 139 78.4
TraesCS2B03G0806600 Triticum aestivum HOM05M003600 ORTHO05M004252 1.9e-49 199.1 173 67.1
TRIDC2BG045430 Triticum dicoccoides HOM05M003600 ORTHO05M004252 1.9e-49 199.1 173 67.1
TRITD2Bv1G146820 Triticum turgidum HOM05M003600 ORTHO05M004252 1.9e-49 199.1 173 67.1
Bradi5g09130 Brachypodium distachyon HOM05M003600 ORTHO05M004252 4.0e-47 191.4 138 77.5
Aco027052 Ananas comosus HOM05M003600 ORTHO05M004252 1.2e-46 189.9 162 66.7
OsKitaake02g192900 Oryza sativa Kitaake HOM05M003600 ORTHO05M004252 9.9e-46 186.8 117 86.3
GWHGAZTO029406 Oryza alta HOM05M003600 ORTHO05M004252 1.7e-45 186.0 173 67.6
GWHGAZTO079094 Oryza alta HOM05M003600 ORTHO05M004252 6.4e-45 184.1 174 67.2
DDU739G0126 Dioscorea dumetorum HOM05M003600 ORTHO05M004252 8.4e-45 183.7 138 72.5
p5.00_sc00012_p0033 Elaeis guineensis HOM05M003600 ORTHO05M004252 1.4e-44 183.0 163 65.0
Zjn_sc00058.1.g03550.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003600 ORTHO05M004252 2.4e-44 182.2 181 64.6
Asa5G03371 Allium sativum HOM05M003600 ORTHO05M004252 1.2e-43 179.9 136 72.1
p5.00_sc00026_p0006 Elaeis guineensis HOM05M003600 ORTHO05M004252 1.2e-43 179.9 131 74.8
GWHGAZTO070414 Oryza alta HOM05M003600 ORTHO05M004252 7.8e-43 177.2 106 88.7
Glyma.03G192100 Glycine max HOM05M003600 ORTHO05M004252 1.9e-41 172.6 136 70.6
MBI01_g05551_MAGBIO Magnolia biondii HOM05M003600 ORTHO05M004252 4.3e-41 171.4 167 60.5
Glyma.12G086500 Glycine max HOM05M003600 ORTHO05M004252 7.3e-41 170.6 138 66.7
Glyma.11G188000 Glycine max HOM05M003600 ORTHO05M004252 9.6e-41 170.2 170 57.6
Ma08_g19340 Musa acuminata HOM05M003600 ORTHO05M004252 9.6e-41 170.2 134 70.9
Glyma.19G192600 Glycine max HOM05M003600 ORTHO05M004252 1.6e-40 169.5 139 70.5
Potri.006G115400 Populus trichocarpa HOM05M003600 ORTHO05M004252 2.1e-40 169.1 165 60.0
Ma02_g22180 Musa acuminata HOM05M003600 ORTHO05M004252 1.4e-39 166.4 170 58.8
Ma03_g19770 Musa acuminata HOM05M003600 ORTHO05M004252 1.4e-39 166.4 137 67.9
ATR0820G174 Amborella trichopoda HOM05M003600 ORTHO05M004252 1.8e-39 166.0 138 65.2
AT3G09980 Arabidopsis thaliana HOM05M003600 ORTHO05M004252 6.9e-39 164.1 138 64.5
Spipo9G0034000 Spirodela polyrhiza HOM05M003600 ORTHO05M004252 2.6e-38 162.2 144 61.1
Potri.004G186900 Populus trichocarpa HOM05M003600 ORTHO05M004252 7.6e-38 160.6 167 55.1
Solyc11g066970.3 Solanum lycopersicum HOM05M003600 ORTHO05M004252 2.2e-37 159.1 175 55.4
evm.TU.AsparagusV1_09.7.V1.1 Asparagus officinalis HOM05M003600 ORTHO05M004252 3.2e-36 155.2 151 59.6
Glyma.10G202700 Glycine max HOM05M003600 ORTHO05M004252 1.2e-35 153.3 167 54.5
AT2G27740 Arabidopsis thaliana HOM05M003600 ORTHO05M004252 6.0e-35 151.0 162 51.9
Potri.010G235600 Populus trichocarpa HOM05M003600 ORTHO05M004252 6.0e-35 151.0 153 56.9
Glyma.20G187600 Glycine max HOM05M003600 ORTHO05M004252 1.0e-34 150.2 167 53.9
Zosma04g24450 Zostera marina HOM05M003600 ORTHO05M004252 5.1e-34 147.9 137 59.1
AT5G03660 Arabidopsis thaliana HOM05M003600 ORTHO05M004252 3.6e-32 141.7 134 58.2
AT3G52920 Arabidopsis thaliana HOM05M003600 ORTHO05M004252 1.1e-31 140.2 138 56.5
AT2G36410 Arabidopsis thaliana HOM05M003600 ORTHO05M004252 9.0e-31 137.1 136 55.1
HPP92_005461 Vanilla planifolia HOM05M003600 ORTHO05M004252 1.2e-30 136.7 136 60.3
Solyc10g083520.2 Solanum lycopersicum HOM05M003600 ORTHO05M004252 5.8e-30 134.4 136 55.1
AT3G52900 Arabidopsis thaliana HOM05M003600 ORTHO05M004252 1.7e-29 132.9 155 51.6
Potri.009G147500 Populus trichocarpa HOM05M003600 ORTHO05M004252 1.7e-29 132.9 166 50.6
Solyc11g007330.2 Solanum lycopersicum HOM05M003600 ORTHO05M004252 3.8e-29 131.7 133 52.6
PH02Gene06163 Phyllostachys edulis HOM05M003600 ORTHO05M004252 1.1e-28 130.2 117 66.7
OsKitaake04g118000 Oryza sativa Kitaake HOM05M003600 ORTHO05M004252 7.1e-28 127.5 89 78.7
TRITD2Av1G178460 Triticum turgidum HOM05M003600 ORTHO05M004252 6.0e-27 124.4 123 60.2
AT2G36355 Arabidopsis thaliana HOM05M003600 ORTHO05M004252 5.1e-26 121.3 136 50.7
PH02Gene29655 Phyllostachys edulis HOM05M003600 ORTHO05M004252 1.3e-24 116.7 106 66.0
Mapoly0038s0078 Marchantia polymorpha HOM05M003600 ORTHO05M004252 1.4e-23 113.2 175 40.6
Pp3c4_24280 Physcomitrium patens HOM05M003600 ORTHO05M004252 6.2e-16 87.8 155 40.0
AagrBONN_evm.TU.Sc2ySwM_228.3606 Anthoceros agrestis HOM05M003600 ORTHO05M004252 9.3e-12 73.9 86 46.5
Zm00001eb421850 Zea mays B73 HOM05M003600 ORTHO05M004252 2.7e-11 72.4 64 67.2


User provided reference genes

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