Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G146700 Miscanthus sinensis HOM05M007218 ORTHO05M008881 6.3e-109 396.7 209 100.0
Misin07G360400 Miscanthus sinensis HOM05M007218 ORTHO05M008881 6.5e-98 360.1 212 92.9
Sspon.04G0011770-1A Saccharum spontaneum HOM05M007218 ORTHO05M008881 1.6e-88 328.9 211 86.7
Zm00001eb180910 Zea mays B73 HOM05M007218 ORTHO05M008881 1.7e-85 318.9 207 84.5
Sobic.004G155400 Sorghum bicolor HOM05M007218 ORTHO05M008881 1.4e-79 299.3 213 82.2
Zm00007a00002111 Zea mays B104 HOM05M007218 ORTHO05M008881 6.8e-79 297.0 207 81.2
Zm00001eb241800 Zea mays B73 HOM05M007218 ORTHO05M008881 1.1e-73 279.6 212 78.3
Zm00007a00004003 Zea mays B104 HOM05M007218 ORTHO05M008881 1.1e-73 279.6 212 78.3
Pahal.1G242200 Panicum hallii HOM05M007218 ORTHO05M008881 7.8e-67 256.9 214 70.6
Seita.1G169400 Setaria italica HOM05M007218 ORTHO05M008881 3.0e-66 255.0 209 72.7
Sevir.1G172100 Setaria viridis HOM05M007218 ORTHO05M008881 3.0e-66 255.0 209 72.7
Dexi1A01G0014920 Digitaria exilis HOM05M007218 ORTHO05M008881 1.6e-64 249.2 211 71.6
Dexi1B01G0013980 Digitaria exilis HOM05M007218 ORTHO05M008881 1.8e-63 245.7 210 71.0
GWHGAORA059214 Cenchrus purpureus HOM05M007218 ORTHO05M008881 5.8e-62 240.7 208 67.8
PH02Gene46548 Phyllostachys edulis HOM05M007218 ORTHO05M008881 4.8e-48 194.5 189 61.4
EJB05_21570 Eragrostis curvula HOM05M007218 ORTHO05M008881 3.1e-47 191.8 199 56.3
PH02Gene30949 Phyllostachys edulis HOM05M007218 ORTHO05M008881 9.3e-44 180.3 208 57.2
Bradi3g44100 Brachypodium distachyon HOM05M007218 ORTHO05M008881 1.0e-42 176.8 205 57.1
V3.Lp_chr2_0G14728 Lolium perenne HOM05M007218 ORTHO05M008881 3.0e-42 175.3 210 55.2
Zjn_sc00020.1.g02810.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M007218 ORTHO05M008881 1.5e-41 172.9 209 53.6
Horvu_MOREX_2H01G509800 Hordeum vulgare HOM05M007218 ORTHO05M008881 1.1e-39 166.8 198 54.0
TraesCS2B03G0937300 Triticum aestivum HOM05M007218 ORTHO05M008881 6.9e-39 164.1 181 56.9
TRITD2Bv1G172870 Triticum turgidum HOM05M007218 ORTHO05M008881 6.9e-39 164.1 181 56.9
OsKitaake02g182800 Oryza sativa Kitaake HOM05M007218 ORTHO05M008881 3.4e-38 161.8 220 51.8
GWHGAZTO070208 Oryza alta HOM05M007218 ORTHO05M008881 5.8e-38 161.0 205 54.1
TraesCS2A03G0848700 Triticum aestivum HOM05M007218 ORTHO05M008881 1.3e-37 159.8 180 55.0
TRITD2Av1G208970 Triticum turgidum HOM05M007218 ORTHO05M008881 1.3e-37 159.8 180 55.0
GWHGASIY009374 Secale cereale HOM05M007218 ORTHO05M008881 2.2e-37 159.1 182 56.6
Os02g0509600 Oryza sativa ssp. japonica HOM05M007218 ORTHO05M008881 3.8e-37 158.3 204 52.5
TRIDC2AG050140 Triticum dicoccoides HOM05M007218 ORTHO05M008881 6.4e-37 157.5 178 55.1
TraesCS2D03G0790400 Triticum aestivum HOM05M007218 ORTHO05M008881 4.2e-36 154.8 181 55.8
Ot_Chr1_g11263 Oropetium thomaeum HOM05M007218 ORTHO05M008881 9.3e-36 153.7 191 53.9
GWHGAZTO018620 Oryza alta HOM05M007218 ORTHO05M008881 1.2e-35 153.3 202 51.5
OsR498G0203902500.01 Oryza sativa ssp. indica HOM05M007218 ORTHO05M008881 4.8e-32 141.4 138 60.9
OB02G25690 Oryza brachyantha HOM05M007218 ORTHO05M008881 3.1e-31 138.7 141 57.4
Zjn_sc00017.1.g04950.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M007218 ORTHO05M008881 3.0e-26 122.1 165 50.9
p5.00_sc00253_p0007 Elaeis guineensis HOM05M007218 ORTHO05M008881 2.0e-22 109.4 187 34.2
Sspon.04G0011770-2C Saccharum spontaneum HOM05M007218 ORTHO05M008881 2.6e-22 109.0 210 42.4
Aco016060 Ananas comosus HOM05M007218 ORTHO05M008881 1.0e-21 107.1 196 37.8
Ma09_g01290 Musa acuminata HOM05M007218 ORTHO05M008881 2.2e-21 105.9 189 39.2
TRIDC2BG053150 Triticum dicoccoides HOM05M007218 ORTHO05M008881 3.2e-20 102.1 84 66.7
AET2Gv20778900 Aegilops tauschii HOM05M007218 ORTHO05M008881 9.4e-20 100.5 84 65.5
evm.TU.AsparagusV1_02.1109.V1.1 Asparagus officinalis HOM05M007218 ORTHO05M008881 3.3e-17 92.0 170 36.5
HPP92_023534 Vanilla planifolia HOM05M007218 ORTHO05M008881 1.2e-14 83.6 178 37.1
Asa5G01686 Allium sativum HOM05M007218 ORTHO05M008881 2.0e-14 82.8 94 45.7
MBI07_g28246_MAGBIO Magnolia biondii HOM05M007218 ORTHO05M008881 1.3e-13 80.1 160 34.4
MBI07_g11269_MAGBIO Magnolia biondii HOM05M007218 ORTHO05M008881 3.8e-13 78.6 155 35.5
Potri.001G057700 Populus trichocarpa HOM05M007218 ORTHO05M008881 5.5e-12 74.7 144 35.4
Potri.003G170700 Populus trichocarpa HOM05M007218 ORTHO05M008881 2.1e-11 72.8 152 36.8
Solyc05g015640.3 Solanum lycopersicum HOM05M007218 ORTHO05M008881 4.7e-11 71.6 211 30.3
Asa8G01416 Allium sativum HOM05M007218 ORTHO05M008881 2.3e-10 69.3 138 34.1
CDE05G3434 Ceratophyllum demersum HOM05M007218 ORTHO05M008881 2.3e-10 69.3 129 34.1
Glyma.18G005200 Glycine max HOM05M007218 ORTHO05M008881 3.9e-10 68.6 149 32.9
ATR0561G196 Amborella trichopoda HOM05M007218 ORTHO05M008881 3.3e-09 65.5 124 35.5
Spipo4G0055900 Spirodela polyrhiza HOM05M007218 ORTHO05M008881 1.1e-07 60.5 91 39.6
Glyma.11G251800 Glycine max HOM05M007218 ORTHO05M008881 2.4e-07 59.3 92 34.8
Zosma04g16890 Zostera marina HOM05M007218 ORTHO05M008881 2.4e-07 59.3 154 26.6
AT1G27300 Arabidopsis thaliana HOM05M007218 ORTHO05M008881 2.0e-06 56.2 50 46.0
SMO141G0097 Selaginella moellendorffii HOM05M007218 ORTHO05M008881 4.5e-06 55.1 73 35.6


User provided reference genes

Program Settings