Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G119400 Miscanthus sinensis HOM05M003800 ORTHO05M004513 1.1e-104 382.5 195 100.0
Misin07G118000 Miscanthus sinensis HOM05M003800 ORTHO05M004513 2.0e-101 371.7 195 97.4
Sspon.04G0013140-2B Saccharum spontaneum HOM05M003800 ORTHO05M004513 3.5e-101 370.9 195 96.4
Pahal.1G107600 Panicum hallii HOM05M003800 ORTHO05M004513 1.0e-100 369.4 194 96.9
Seita.1G123700 Setaria italica HOM05M003800 ORTHO05M004513 2.9e-100 367.9 194 95.9
Sevir.1G122500 Setaria viridis HOM05M003800 ORTHO05M004513 2.9e-100 367.9 194 95.9
Zm00007a00020739 Zea mays B104 HOM05M003800 ORTHO05M004513 1.1e-99 365.9 195 94.4
Ot_Chr1_g09581 Oropetium thomaeum HOM05M003800 ORTHO05M004513 1.2e-96 355.9 194 92.8
V3.Lp_chr6_0G7926 Lolium perenne HOM05M003800 ORTHO05M004513 1.1e-94 349.4 194 91.2
GWHGAZTO017685 Oryza alta HOM05M003800 ORTHO05M004513 5.4e-94 347.1 192 90.6
PH02Gene28385 Phyllostachys edulis HOM05M003800 ORTHO05M004513 7.0e-94 346.7 195 89.7
GWHGAZTO069345 Oryza alta HOM05M003800 ORTHO05M004513 1.2e-93 345.9 191 90.6
OsKitaake02g122600 Oryza sativa Kitaake HOM05M003800 ORTHO05M004513 2.7e-93 344.7 192 90.1
OsR498G0203404200.01 Oryza sativa ssp. indica HOM05M003800 ORTHO05M004513 2.7e-93 344.7 192 90.1
Os02g0276400 Oryza sativa ssp. japonica HOM05M003800 ORTHO05M004513 2.7e-93 344.7 192 90.1
GWHGASIY021610 Secale cereale HOM05M003800 ORTHO05M004513 2.7e-93 344.7 194 90.2
GWHGASIY043502 Secale cereale HOM05M003800 ORTHO05M004513 2.7e-93 344.7 194 90.2
Horvu_MOREX_7H01G135400 Hordeum vulgare HOM05M003800 ORTHO05M004513 7.7e-93 343.2 194 89.7
TraesCS7B03G0059500 Triticum aestivum HOM05M003800 ORTHO05M004513 1.7e-92 342.0 194 89.2
TraesCS7D03G0271300 Triticum aestivum HOM05M003800 ORTHO05M004513 1.7e-92 342.0 194 89.2
TRITD7Bv1G008120 Triticum turgidum HOM05M003800 ORTHO05M004513 1.7e-92 342.0 194 89.2
TraesCS7A03G0291900 Triticum aestivum HOM05M003800 ORTHO05M004513 2.2e-92 341.7 194 88.7
TRIDC7AG014470 Triticum dicoccoides HOM05M003800 ORTHO05M004513 2.2e-92 341.7 194 88.7
TRITD7Av1G036430 Triticum turgidum HOM05M003800 ORTHO05M004513 2.2e-92 341.7 194 88.7
OB02G20730 Oryza brachyantha HOM05M003800 ORTHO05M004513 2.9e-92 341.3 192 89.6
AET0Gv20141700 Aegilops tauschii HOM05M003800 ORTHO05M004513 1.5e-91 339.0 194 88.7
Bradi3g10240 Brachypodium distachyon HOM05M003800 ORTHO05M004513 1.5e-91 339.0 194 87.6
TraesCS4D03G0297400 Triticum aestivum HOM05M003800 ORTHO05M004513 5.5e-91 337.0 194 87.1
GWHGAORA016157 Cenchrus purpureus HOM05M003800 ORTHO05M004513 1.8e-89 332.0 194 90.2
Sobic.004G125700 Sorghum bicolor HOM05M003800 ORTHO05M004513 5.2e-89 330.5 173 98.3
Sspon.04G0013100-2B Saccharum spontaneum HOM05M003800 ORTHO05M004513 5.9e-85 317.0 190 82.1
Sspon.04G0013140-1A Saccharum spontaneum HOM05M003800 ORTHO05M004513 1.0e-84 316.2 191 88.0
Misin08G119300 Miscanthus sinensis HOM05M003800 ORTHO05M004513 1.7e-84 315.5 190 81.6
Sobic.004G125400 Sorghum bicolor HOM05M003800 ORTHO05M004513 6.6e-84 313.5 190 81.1
Seita.1G123600 Setaria italica HOM05M003800 ORTHO05M004513 4.3e-83 310.8 190 78.9
Sevir.1G122400 Setaria viridis HOM05M003800 ORTHO05M004513 4.3e-83 310.8 190 78.9
OsKitaake02g122500 Oryza sativa Kitaake HOM05M003800 ORTHO05M004513 1.0e-81 306.2 191 81.2
OsR498G0203403000.01 Oryza sativa ssp. indica HOM05M003800 ORTHO05M004513 1.0e-81 306.2 191 81.2
OB02G20720 Oryza brachyantha HOM05M003800 ORTHO05M004513 1.8e-81 305.4 195 74.9
Dexi1A01G0012670 Digitaria exilis HOM05M003800 ORTHO05M004513 2.2e-79 298.5 209 77.0
p5.00_sc00001_p0424 Elaeis guineensis HOM05M003800 ORTHO05M004513 1.2e-77 292.7 192 76.6
Ma10_g22120 Musa acuminata HOM05M003800 ORTHO05M004513 3.5e-77 291.2 192 74.5
Aco004426 Ananas comosus HOM05M003800 ORTHO05M004513 1.0e-76 289.7 191 74.3
Os02g0276200 Oryza sativa ssp. japonica HOM05M003800 ORTHO05M004513 1.5e-75 285.8 180 80.6
PH02Gene21067 Phyllostachys edulis HOM05M003800 ORTHO05M004513 1.4e-73 279.3 177 79.1
Sspon.04G0013100-1A Saccharum spontaneum HOM05M003800 ORTHO05M004513 1.4e-73 279.3 171 80.7
EJB05_24323 Eragrostis curvula HOM05M003800 ORTHO05M004513 1.2e-72 276.2 215 68.4
TRIDC7BG003480 Triticum dicoccoides HOM05M003800 ORTHO05M004513 3.4e-72 274.6 153 89.5
Spipo14G0017800 Spirodela polyrhiza HOM05M003800 ORTHO05M004513 4.1e-70 267.7 187 70.1
Glyma.07G018600 Glycine max HOM05M003800 ORTHO05M004513 1.2e-69 266.2 191 69.6
Solyc03g120540.3 Solanum lycopersicum HOM05M003800 ORTHO05M004513 4.6e-69 264.2 189 70.4
Potri.003G051700 Populus trichocarpa HOM05M003800 ORTHO05M004513 6.0e-69 263.8 191 70.7
Glyma.08G203800 Glycine max HOM05M003800 ORTHO05M004513 2.3e-68 261.9 191 68.1
CDE08G1506 Ceratophyllum demersum HOM05M003800 ORTHO05M004513 6.6e-68 260.4 189 68.3
ATR0736G109 Amborella trichopoda HOM05M003800 ORTHO05M004513 1.5e-67 259.2 196 67.3
evm.TU.AsparagusV1_01.1752.V1.1 Asparagus officinalis HOM05M003800 ORTHO05M004513 1.5e-67 259.2 186 71.0
GWHGAZTO017683 Oryza alta HOM05M003800 ORTHO05M004513 7.3e-67 256.9 173 78.0
HPP92_003927 Vanilla planifolia HOM05M003800 ORTHO05M004513 7.3e-67 256.9 187 68.4
MBI04_g04855_MAGBIO Magnolia biondii HOM05M003800 ORTHO05M004513 2.8e-66 255.0 186 68.8
Zjn_sc00138.1.g00840.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003800 ORTHO05M004513 1.1e-65 253.1 194 71.6
CALSI_Maker00028786 Calamus simplicifolius HOM05M003800 ORTHO05M004513 5.8e-64 247.3 190 65.8
SEGI_12338 Sequoiadendron giganteum HOM05M003800 ORTHO05M004513 9.8e-64 246.5 188 65.4
DDU512G0404 Dioscorea dumetorum HOM05M005481 ORTHO05M006901 1.7e-63 245.7 183 66.1
AT3G16190 Arabidopsis thaliana HOM05M003800 ORTHO05M004513 4.9e-63 244.2 192 64.6
GWHGAORA016175 Cenchrus purpureus HOM05M003800 ORTHO05M004513 1.2e-61 239.6 133 92.5
TRIDC4AG027390 Triticum dicoccoides HOM05M003800 ORTHO05M004513 1.5e-59 232.6 141 84.4
Sspon.04G0013940-2C Saccharum spontaneum HOM05M000002 ORTHO05M000002 7.3e-59 230.3 173 73.4
Mapoly0052s0007 Marchantia polymorpha HOM05M003800 ORTHO05M004513 2.1e-58 228.8 189 60.3
SMO147G0229 Selaginella moellendorffii HOM05M003800 ORTHO05M004513 2.1e-58 228.8 186 63.4
Aco010789 Ananas comosus HOM05M002282 ORTHO05M005350 3.6e-58 228.0 172 68.0
Misin07G117900 Miscanthus sinensis HOM05M003800 ORTHO05M004513 1.4e-57 226.1 190 64.7
Ot_Chr1_gn31901 Oropetium thomaeum HOM05M003800 ORTHO05M004513 4.0e-57 224.6 179 67.6
Pp3c13_4590 Physcomitrium patens HOM05M003800 ORTHO05M004513 5.2e-57 224.2 189 58.7
Zosma05g13500 Zostera marina HOM05M003800 ORTHO05M004513 1.5e-56 222.6 222 53.6
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05M001938 ORTHO05M002175 5.8e-56 220.7 192 57.3
Ot_Chr5_g05174 Oropetium thomaeum HOM05M003800 ORTHO05M004513 7.6e-56 220.3 171 67.8
Asa4G02526 Allium sativum HOM05M003800 ORTHO05M004513 1.7e-55 219.2 166 67.5
Zjn_sc00138.1.g00830.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003800 ORTHO05M004513 8.6e-52 206.8 198 62.1
CBR_g48432 Chara braunii HOM05M003800 ORTHO05M004513 1.1e-49 199.9 188 55.3
Asa2G05146 Allium sativum HOM05M003800 ORTHO05M004513 1.2e-48 196.4 173 55.5
DexiUA01G0006470 Digitaria exilis HOM05M003800 ORTHO05M004513 3.4e-48 194.9 133 75.2
Dexi1A01G0012680 Digitaria exilis HOM05M003800 ORTHO05M004513 4.9e-47 191.0 133 74.4
Dexi1B01G0011370 Digitaria exilis HOM05M003800 ORTHO05M004513 4.9e-47 191.0 133 74.4
GWHGAORA016158 Cenchrus purpureus HOM05M003800 ORTHO05M004513 1.4e-46 189.5 110 81.8
Cre16.g674650 Chlamydomonas reinhardtii HOM05M003800 ORTHO05M004513 8.7e-44 180.3 191 50.8
GWHGAZTO069337 Oryza alta HOM05M003800 ORTHO05M004513 8.7e-44 180.3 166 62.0
DexiUA01G0024300 Digitaria exilis HOM05M003800 ORTHO05M004513 2.9e-39 165.2 97 84.5
Dexi1B01G0011380 Digitaria exilis HOM05M003800 ORTHO05M004513 6.4e-39 164.1 103 83.5
Glyma.08G203700 Glycine max HOM05M003800 ORTHO05M004513 8.7e-36 153.7 118 66.9
PH02Gene20115 Phyllostachys edulis HOM05M003800 ORTHO05M004513 6.4e-31 137.5 78 87.2
PH02Gene31975 Phyllostachys edulis HOM05M003800 ORTHO05M004513 7.1e-30 134.0 78 87.2
PH02Gene06634 Phyllostachys edulis HOM05M003800 ORTHO05M004513 5.1e-28 127.9 77 84.4
GWHGAZTO069343 Oryza alta HOM05M003800 ORTHO05M004513 7.4e-27 124.0 81 75.3
Asa3G02265 Allium sativum HOM05M003800 ORTHO05M004513 1.2e-21 106.7 110 52.7
Zm00001eb237290 Zea mays B73 HOM05M003800 ORTHO05M004513 1.2e-21 106.7 58 94.8
DexiUA01G0006320 Digitaria exilis HOM05M003800 ORTHO05M004513 3.0e-20 102.1 54 92.6
AET1Gv20332700 Aegilops tauschii HOM05M003800 ORTHO05M004513 1.6e-18 96.3 59 72.9
TraesCS1D03G0324300 Triticum aestivum HOM05M003800 ORTHO05M004513 2.1e-18 95.9 63 68.3
GWHGAORA016176 Cenchrus purpureus HOM05M003800 ORTHO05M004513 7.6e-16 87.4 56 73.2
Asa2G05145 Allium sativum HOM05M003800 ORTHO05M004513 1.7e-15 86.3 188 31.9
Zm00007a00050689 Zea mays B104 HOM05M003800 ORTHO05M004513 1.3e-12 76.6 44 88.6
Asa3G01129 Allium sativum HOM05M003800 ORTHO05M004513 5.1e-12 74.7 137 38.7
GWHGAZTO069344 Oryza alta HOM05M003800 ORTHO05M004513 6.3e-10 67.8 60 58.3
Cre10.g448500 Chlamydomonas reinhardtii HOM05M007015 ORTHO05M008518 3.1e-09 65.5 188 30.3
MCO09G426 Micromonas commoda HOM05M007015 ORTHO05M008518 2.6e-08 62.4 182 27.5
CALSI_Maker00021277 Calamus simplicifolius HOM05M007015 ORTHO05M008518 3.4e-08 62.0 172 30.2
SMO116G0488 Selaginella moellendorffii HOM05M007015 ORTHO05M008518 4.5e-08 61.6 176 30.1
p5.00_sc00345_p0005 Elaeis guineensis HOM05M007015 ORTHO05M008518 1.3e-07 60.1 170 28.8
HPP92_005057 Vanilla planifolia HOM05M007015 ORTHO05M008518 6.5e-07 57.8 170 27.6
Zm00007a00024301 Zea mays B104 HOM05M003800 ORTHO05M004513 6.5e-07 57.8 32 87.5
ATR0618G206 Amborella trichopoda HOM05M007015 ORTHO05M008518 1.1e-06 57.0 172 26.2
MCO13G030 Micromonas commoda HOM05M007015 ORTHO05M008518 1.4e-06 56.6 176 29.5
Spipo1G0045300 Spirodela polyrhiza HOM05M007015 ORTHO05M008518 7.2e-06 54.3 173 26.0
Solyc01g007920.2 Solanum lycopersicum HOM05M007015 ORTHO05M008518 9.4e-06 53.9 171 26.3


User provided reference genes

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