Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G101400 Miscanthus sinensis HOM05M010550 ORTHO05M011182 5.3e-134 481.5 571 100.0
Sspon.04G0014130-1A Saccharum spontaneum HOM05M010550 ORTHO05M011182 3.4e-80 302.8 611 75.0
Sspon.04G0014130-2D Saccharum spontaneum HOM05M010550 ORTHO05M011182 5.6e-75 285.4 200 82.5
Zm00001eb238300 Zea mays B73 HOM05M010550 ORTHO05M011182 1.4e-70 270.8 213 77.0
Zm00007a00036086 Zea mays B104 HOM05M010550 ORTHO05M011182 1.2e-69 267.7 211 76.8
Misin07G109300 Miscanthus sinensis HOM05M010550 ORTHO05M011182 6.2e-66 255.4 581 71.9
Sobic.004G111500 Sorghum bicolor HOM05M010550 ORTHO05M011182 1.4e-65 254.2 584 65.2
Pahal.1G122900 Panicum hallii HOM05M010550 ORTHO05M011182 3.2e-46 189.9 237 57.8
Seita.1G015800 Setaria italica HOM05M010550 ORTHO05M011182 3.3e-43 179.9 213 60.6
Sevir.1G015700 Setaria viridis HOM05M010550 ORTHO05M011182 4.8e-42 176.0 213 59.6
GWHGAORA059065 Cenchrus purpureus HOM05M010550 ORTHO05M011182 9.7e-35 151.8 243 50.2
EJB05_25081 Eragrostis curvula HOM05M010550 ORTHO05M011182 1.6e-34 151.0 231 53.7
Zjn_sc00138.1.g00100.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M010550 ORTHO05M011182 2.8e-34 150.2 641 49.3
Dexi1B01G0010410 Digitaria exilis HOM05M010550 ORTHO05M011182 2.5e-30 137.1 215 53.5
Ot_Chr1_g19050 Oropetium thomaeum HOM05M010550 ORTHO05M011182 5.5e-30 136.0 219 50.7
Dexi1A01G0011000 Digitaria exilis HOM05M010550 ORTHO05M011182 2.6e-24 117.1 599 52.9
V3.Lp_chr6_0G14612 Lolium perenne HOM05M011595 ORTHO05M011182 4.0e-12 76.6 70 64.3
TRITD1Av1G218340 Triticum turgidum HOM05M011595 ORTHO05M011182 5.2e-12 76.3 195 41.0
Bradi3g09480 Brachypodium distachyon HOM05M011595 ORTHO05M011182 1.5e-11 74.7 82 54.9
TraesCS1A03G0904500 Triticum aestivum HOM05M011595 ORTHO05M011182 4.4e-11 73.2 195 40.0
GWHGASIY004833 Secale cereale HOM05M011595 ORTHO05M011182 1.7e-10 71.2 90 53.3
TraesCS1B03G1062500 Triticum aestivum HOM05M011595 ORTHO05M011182 6.3e-10 69.3 188 39.9
AET1Gv20897700 Aegilops tauschii HOM05M011595 ORTHO05M011182 1.1e-09 68.6 187 38.5
TraesCS1D03G0882600 Triticum aestivum HOM05M011595 ORTHO05M011182 3.1e-09 67.0 189 40.2
V3.Lp_chr6_0G14610 Lolium perenne HOM05M011595 ORTHO05M011182 4.1e-09 66.6 207 39.6
OB02G19570 Oryza brachyantha HOM05M017081 ORTHO05M011182 9.1e-09 65.5 73 58.9
OsKitaake02g109200 Oryza sativa Kitaake HOM05M017081 ORTHO05M011182 2.0e-08 64.3 74 64.9
Os02g0250600 Oryza sativa ssp. japonica HOM05M017081 ORTHO05M011182 2.0e-08 64.3 74 64.9
PH02Gene41230 Phyllostachys edulis HOM05M011595 ORTHO05M011182 2.0e-08 64.3 233 34.8
GWHGAZTO017467 Oryza alta HOM05M017081 ORTHO05M011182 6.5e-07 59.3 241 39.0
GWHGAZTO069186 Oryza alta HOM05M017081 ORTHO05M011182 2.5e-06 57.4 68 60.3


User provided reference genes

Program Settings