Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G034000 Miscanthus sinensis HOM05M006527 ORTHO05M007842 9.2e-304 1045.4 571 100.0
Sobic.004G036300 Sorghum bicolor HOM05M006527 ORTHO05M007842 1.5e-277 958.4 570 92.1
Misin07G035200 Miscanthus sinensis HOM05M006527 ORTHO05M007842 2.5e-277 957.6 570 92.6
Sspon.04G0018650-2B Saccharum spontaneum HOM05M006527 ORTHO05M007842 2.1e-276 954.5 568 92.8
Sspon.04G0018650-1A Saccharum spontaneum HOM05M006527 ORTHO05M007842 4.8e-276 953.4 570 92.8
Zm00001eb209220 Zea mays B73 HOM05M006527 ORTHO05M007842 4.8e-252 873.6 564 84.6
Pahal.1G030800 Panicum hallii HOM05M006527 ORTHO05M007842 2.9e-217 758.1 574 76.7
GWHGAORA015263 Cenchrus purpureus HOM05M006527 ORTHO05M007842 5.6e-216 753.8 577 75.4
GWHGAORA058286 Cenchrus purpureus HOM05M006527 ORTHO05M007842 7.3e-216 753.4 576 75.7
Seita.1G092700 Setaria italica HOM05M006527 ORTHO05M007842 1.4e-214 749.2 575 74.6
Sevir.1G090900 Setaria viridis HOM05M006527 ORTHO05M007842 1.2e-210 736.1 576 73.6
Dexi1B01G0003590 Digitaria exilis HOM05M006527 ORTHO05M007842 5.8e-205 717.2 583 71.4
Dexi1A01G0003570 Digitaria exilis HOM05M006527 ORTHO05M007842 1.9e-203 712.2 582 71.1
Zm00007a00016513 Zea mays B104 HOM05M006527 ORTHO05M007842 3.0e-201 704.9 564 72.3
Ot_Chr1_g14321 Oropetium thomaeum HOM05M006527 ORTHO05M007842 7.3e-184 647.1 577 68.5
PH02Gene29376 Phyllostachys edulis HOM05M006527 ORTHO05M007842 2.9e-180 635.2 590 65.1
EJB05_25312 Eragrostis curvula HOM05M006527 ORTHO05M007842 5.1e-169 597.8 521 69.3
OsKitaake02g031400 Oryza sativa Kitaake HOM05M006527 ORTHO05M007842 6.2e-167 590.9 567 62.3
OsR498G0202929500.01 Oryza sativa ssp. indica HOM05M006527 ORTHO05M007842 6.2e-167 590.9 567 62.3
Os02g0138200 Oryza sativa ssp. japonica HOM05M006527 ORTHO05M007842 6.2e-167 590.9 567 62.3
Horvu_MOREX_6H01G128800 Hordeum vulgare HOM05M006527 ORTHO05M007842 1.3e-164 583.2 605 60.5
TraesCS6A03G0254300 Triticum aestivum HOM05M006527 ORTHO05M007842 8.4e-164 580.5 619 60.1
TRITD6Av1G032680 Triticum turgidum HOM05M006527 ORTHO05M007842 8.4e-164 580.5 619 60.1
V3.Lp_chr6_0G2608 Lolium perenne HOM05M006527 ORTHO05M007842 4.6e-162 574.7 590 60.8
GWHGAZTO068151 Oryza alta HOM05M006527 ORTHO05M007842 7.9e-162 573.9 558 62.2
GWHGASIY031004 Secale cereale HOM05M006527 ORTHO05M007842 4.3e-160 568.2 596 60.7
AET6Gv20282000 Aegilops tauschii HOM05M006527 ORTHO05M007842 2.8e-159 565.5 617 58.5
TraesCS6D03G0210300 Triticum aestivum HOM05M006527 ORTHO05M007842 2.8e-159 565.5 617 58.5
TRITD6Bv1G045770 Triticum turgidum HOM05M006527 ORTHO05M007842 1.1e-155 553.5 621 58.1
TRIDC6BG019620 Triticum dicoccoides HOM05M006527 ORTHO05M007842 1.4e-155 553.1 605 58.5
TraesCS6B03G0347000 Triticum aestivum HOM05M006527 ORTHO05M007842 2.5e-155 552.4 621 57.8
Bradi3g03550 Brachypodium distachyon HOM05M006527 ORTHO05M007842 5.3e-150 534.6 598 59.0
TRIDC6AG014140 Triticum dicoccoides HOM05M006527 ORTHO05M007842 2.6e-149 532.3 577 58.9
GWHGAZTO016489 Oryza alta HOM05M006527 ORTHO05M007842 3.8e-116 422.2 462 59.7
Zjn_sc00037.1.g04750.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M006527 ORTHO05M007842 1.5e-99 367.1 242 78.9
GWHGAZTO068147 Oryza alta HOM05M006527 ORTHO05M007842 2.6e-96 356.3 422 56.6
Aco021801 Ananas comosus HOM05M006527 ORTHO05M007842 1.7e-95 353.6 548 42.0
Ma07_g15640 Musa acuminata HOM05M006527 ORTHO05M007842 1.4e-81 307.4 580 38.4
p5.00_sc00024_p0007 Elaeis guineensis HOM05M006527 ORTHO05M007842 2.1e-77 293.5 562 39.0
GWHGAZTO068144 Oryza alta HOM05M006527 ORTHO05M007842 4.6e-69 265.8 368 53.3
HPP92_017041 Vanilla planifolia HOM05M006527 ORTHO05M007842 1.0e-68 264.6 557 35.9
GWHGAZTO068257 Oryza alta HOM05M006527 ORTHO05M007842 2.6e-64 250.0 347 53.9
Asa6G00383 Allium sativum HOM05M006527 ORTHO05M007842 9.9e-64 248.1 562 37.0
Glyma.09G084800 Glycine max HOM05M006527 ORTHO05M007842 8.7e-60 235.0 615 32.7
Potri.018G151300 Populus trichocarpa HOM05M006527 ORTHO05M007842 2.1e-58 230.3 593 32.2
Spipo12G0066400 Spirodela polyrhiza HOM05M006527 ORTHO05M007842 3.1e-57 226.5 604 34.8
Glyma.15G193100 Glycine max HOM05M006527 ORTHO05M007842 2.2e-55 220.3 619 32.5
Zosma03g19210 Zostera marina HOM05M006527 ORTHO05M007842 3.5e-53 213.0 621 32.7
MBI16_g40727_MAGBIO Magnolia biondii HOM05M006527 ORTHO05M007842 1.0e-52 211.5 608 33.6
evm.TU.AsparagusV1_01.3569.V1.1 Asparagus officinalis HOM05M006527 ORTHO05M007842 3.9e-52 209.5 649 31.4
GWHGAZTO068254 Oryza alta HOM05M006527 ORTHO05M007842 6.7e-52 208.8 151 69.5
AT5G58130 Arabidopsis thaliana HOM05M006527 ORTHO05M007842 1.1e-49 201.4 242 49.2
ATR0626G098 Amborella trichopoda HOM05M006527 ORTHO05M007842 4.5e-48 196.1 594 32.3
SEGI_05126 Sequoiadendron giganteum HOM05M006527 ORTHO05M007842 8.7e-44 181.8 229 46.3
CDE05G3219 Ceratophyllum demersum HOM05M006527 ORTHO05M007842 3.4e-40 169.9 482 31.5
CALSI_Maker00022900 Calamus simplicifolius HOM05M006527 ORTHO05M007842 8.2e-34 148.7 204 45.1
Solyc07g042740.3 Solanum lycopersicum HOM05M006527 ORTHO05M007842 1.0e-28 131.7 153 49.0
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05M006527 ORTHO05M007842 2.2e-26 124.0 191 40.8
Mapoly0169s0023 Marchantia polymorpha HOM05M006527 ORTHO05M007842 6.5e-23 112.5 365 30.1
SMO367G1245 Selaginella moellendorffii HOM05M006527 ORTHO05M007842 8.5e-23 112.1 669 25.3
Pp3c1_8430 Physcomitrium patens HOM05M006527 ORTHO05M007842 1.1e-19 101.7 116 48.3
Glyma.07G231200 Glycine max HOM05M003414 ORTHO05M007842 3.0e-12 77.0 80 51.2
CBR_g39420 Chara braunii HOM05M006527 ORTHO05M007842 7.5e-11 72.4 62 53.2
GWHGAZTO016492 Oryza alta HOM05M006527 ORTHO05M007842 2.2e-10 70.9 74 54.1
GWHGAZTO016499 Oryza alta HOM05M006527 ORTHO05M007842 2.2e-10 70.9 74 54.1
GWHGAZTO048317 Oryza alta HOM05M006527 ORTHO05M007842 4.1e-09 66.6 60 55.0
Cre14.g633400 Chlamydomonas reinhardtii HOM05M006527 ORTHO05M007842 2.6e-08 63.9 114 35.1
GWHGAZTO016500 Oryza alta HOM05M000820 ORTHO05M000755 1.3e-07 61.6 142 49.3
MBI16_g40728_MAGBIO Magnolia biondii HOM05M006527 ORTHO05M007842 3.2e-06 57.0 72 47.2


User provided reference genes

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