Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0079 Marchantia polymorpha HOM05M003486 ORTHO05M002466 1.3e-51 205.3 104 100.0
Zosma70g00010 Zostera marina HOM05M003486 ORTHO05M002466 1.5e-34 148.7 104 69.2
Zosma935g00010 Zostera marina HOM05M003486 ORTHO05M002466 1.5e-34 148.7 104 69.2
ATR0424G001 Amborella trichopoda HOM05M003486 ORTHO05M002466 3.3e-34 147.5 103 68.9
Asa0G00124 Allium sativum HOM05M003486 ORTHO05M002466 4.3e-34 147.1 102 69.6
Asa0G01643 Allium sativum HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 68.6
Asa1G01137 Allium sativum HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 68.6
Asa2G00676 Allium sativum HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 68.6
Asa2G02767 Allium sativum HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 68.6
Asa4G06591 Allium sativum HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 68.6
Asa6G04107 Allium sativum HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 68.6
Asa6G05850 Allium sativum HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 68.6
Asa7G03840 Allium sativum HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 68.6
CDE02G2600 Ceratophyllum demersum HOM05M000532 ORTHO05M002466 5.7e-34 146.7 101 69.3
Spipo0G0159400 Spirodela polyrhiza HOM05M003486 ORTHO05M002466 5.7e-34 146.7 102 69.6
AET5Gv21238900 Aegilops tauschii HOM05M003486 ORTHO05M002466 9.7e-34 146.0 102 69.6
Bradi1g05774 Brachypodium distachyon HOM05M003486 ORTHO05M002466 9.7e-34 146.0 102 69.6
Bradi3g27295 Brachypodium distachyon HOM05M003486 ORTHO05M002466 9.7e-34 146.0 102 69.6
Horvu_MOREX_Un01G057300 Hordeum vulgare HOM05M003486 ORTHO05M002466 9.7e-34 146.0 102 69.6
TraesCS2D03G0544400 Triticum aestivum HOM05M003486 ORTHO05M002466 9.7e-34 146.0 102 69.6
TraesCS3D03G0109200 Triticum aestivum HOM05M003486 ORTHO05M002466 9.7e-34 146.0 102 69.6
TRIDC4BG002940 Triticum dicoccoides HOM05M003486 ORTHO05M002466 9.7e-34 146.0 102 69.6
Solyc00g500032.1 Solanum lycopersicum HOM05M003486 ORTHO05M002466 1.3e-33 145.6 102 70.6
Solyc00g500077.1 Solanum lycopersicum HOM05M003486 ORTHO05M002466 1.3e-33 145.6 102 70.6
Ot_Un168_gn40599 Oropetium thomaeum HOM05M003486 ORTHO05M002466 1.6e-33 145.2 102 69.6
Ot_Un169_gn40640 Oropetium thomaeum HOM05M003486 ORTHO05M002466 1.6e-33 145.2 102 69.6
Pahal.4G130200 Panicum hallii HOM05M003486 ORTHO05M002466 2.2e-33 144.8 102 68.6
SEGI_15837 Sequoiadendron giganteum HOM05M003486 ORTHO05M002466 2.8e-33 144.4 107 71.0
TRIDC4AG060220 Triticum dicoccoides HOM05M003486 ORTHO05M002466 3.7e-33 144.1 100 71.0
Asa5G04350 Allium sativum HOM05M003486 ORTHO05M002466 4.8e-33 143.7 103 68.9
SEGI_13221 Sequoiadendron giganteum HOM05M000431 ORTHO05M002466 4.8e-33 143.7 106 71.7
Seita.J014900 Setaria italica HOM05M003486 ORTHO05M002466 4.8e-33 143.7 102 67.6
Sevir.9G044615 Setaria viridis HOM05M003486 ORTHO05M002466 4.8e-33 143.7 102 67.6
OsKitaake01g354900 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 6.3e-33 143.3 102 67.6
OsKitaake07g257400 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 6.3e-33 143.3 102 67.6
OsKitaake11g187900 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 6.3e-33 143.3 102 67.6
TraesCS1A03G1053200 Triticum aestivum HOM05M003486 ORTHO05M002466 8.2e-33 142.9 102 68.6
TRITD3Bv1G076130 Triticum turgidum HOM05M003486 ORTHO05M002466 1.1e-32 142.5 102 67.6
ATCG00790 Arabidopsis thaliana HOM05M003486 ORTHO05M002466 1.8e-32 141.7 102 68.6
TRITD1Av1G227010 Triticum turgidum HOM05M003486 ORTHO05M002466 1.8e-32 141.7 102 67.6
AET1Gv20470600 Aegilops tauschii HOM05M003486 ORTHO05M002466 2.4e-32 141.4 102 67.6
OsKitaake07g262400 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 3.1e-32 141.0 102 67.6
TRITD6Av1G100260 Triticum turgidum HOM05M003486 ORTHO05M002466 5.3e-32 140.2 102 66.7
TraesCS6A03G0500400 Triticum aestivum HOM05M003486 ORTHO05M002466 6.9e-32 139.8 102 66.7
TRIDC7BG050150 Triticum dicoccoides HOM05M003486 ORTHO05M002466 6.9e-32 139.8 102 66.7
TRIDC1AG063670 Triticum dicoccoides HOM05M003486 ORTHO05M002466 9.0e-32 139.4 102 67.6
Zm00007a00046253 Zea mays B104 HOM05M003486 ORTHO05M002466 9.0e-32 139.4 98 69.4
SEGI_04734 Sequoiadendron giganteum HOM05M001177 ORTHO05M002466 2.0e-31 138.3 103 70.9
Asa0G05632 Allium sativum HOM05M003486 ORTHO05M002466 5.9e-31 136.7 102 66.7
Horvu_MOREX_6H01G272900 Hordeum vulgare HOM05M003486 ORTHO05M002466 7.7e-31 136.3 102 65.7
Solyc00g500154.1 Solanum lycopersicum HOM05M003486 ORTHO05M002466 1.7e-30 135.2 99 67.7
TRIDC6AG029060 Triticum dicoccoides HOM05M003486 ORTHO05M002466 2.2e-30 134.8 102 64.7
Horvu_MOREX_2H01G373100 Hordeum vulgare HOM05M003486 ORTHO05M002466 2.9e-30 134.4 102 63.7
Asa3G02108 Allium sativum HOM05M003486 ORTHO05M002466 6.5e-30 133.3 102 62.7
TraesCS6A03G0491900 Triticum aestivum HOM05M003486 ORTHO05M002466 8.5e-30 132.9 99 65.7
V3.Lp_chr5_0G17230 Lolium perenne HOM05M003486 ORTHO05M002466 1.4e-29 132.1 92 70.7
SMO086G0056 Selaginella moellendorffii HOM05M003486 ORTHO05M002466 1.9e-29 131.7 102 66.7
AET4Gv20086600 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.6e-28 128.6 103 64.1
Asa4G01756 Allium sativum HOM05M003486 ORTHO05M002466 2.1e-28 128.3 102 58.8
Asa2G07513 Allium sativum HOM05M003486 ORTHO05M002466 1.0e-27 125.9 102 61.8
OsKitaake11g100000 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 2.3e-27 124.8 105 60.0
Os11g0269100 Oryza sativa ssp. japonica HOM05M003486 ORTHO05M002466 2.3e-27 124.8 105 60.0
Asa2G07061 Allium sativum HOM05M003486 ORTHO05M002466 3.0e-27 124.4 99 62.6
Solyc09g050065.1 Solanum lycopersicum HOM05M003486 ORTHO05M002466 3.0e-27 124.4 100 61.0
Asa2G07517 Allium sativum HOM05M003486 ORTHO05M002466 5.1e-27 123.6 102 60.8
OsR498G1119780600.01 Oryza sativa ssp. indica HOM05M003486 ORTHO05M002466 5.1e-27 123.6 105 60.0
Misin01G255900 Miscanthus sinensis HOM05M003486 ORTHO05M002466 8.8e-27 122.9 91 65.9
AT2G28815 Arabidopsis thaliana HOM05M003486 ORTHO05M002466 1.5e-23 112.1 103 55.3
SEGI_15868 Sequoiadendron giganteum HOM05M003486 ORTHO05M002466 4.5e-23 110.5 81 71.6
AET1Gv20522900 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.7e-22 108.6 73 71.2
Pahal.5G333600 Panicum hallii HOM05M003486 ORTHO05M002466 3.8e-22 107.5 79 65.8
Aco016798 Ananas comosus HOM05M003486 ORTHO05M001487 6.5e-22 106.7 84 61.9
GWHGASIY042326 Secale cereale HOM05M003486 ORTHO05M002466 8.5e-22 106.3 67 74.6
Aco031626 Ananas comosus HOM05M003486 ORTHO05M002466 2.5e-21 104.8 57 80.7
DexiUA01G0020380 Digitaria exilis HOM05M003486 ORTHO05M002466 2.5e-21 104.8 102 50.0
OsKitaake09g073300 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 5.5e-21 103.6 91 58.2
OsKitaakeM050601 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 5.5e-21 103.6 91 58.2
Zosma05g21490 Zostera marina HOM05M003486 ORTHO05M002466 1.2e-20 102.4 104 48.1
AET0Gv20166300 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.6e-20 102.1 55 83.6
Asa0G03241 Allium sativum HOM05M003486 ORTHO05M002466 3.6e-20 100.9 80 62.5
Aco025940 Ananas comosus HOM05M003486 ORTHO05M001487 3.6e-20 100.9 57 78.9
Asa7G04711 Allium sativum HOM05M003486 ORTHO05M002466 9.7e-18 92.8 57 71.9
TRIDC6AG010690 Triticum dicoccoides HOM05M003486 ORTHO05M002466 2.2e-17 91.7 49 79.6
TRIDC3AG059440 Triticum dicoccoides HOM05M003486 ORTHO05M002466 1.1e-16 89.4 52 76.9
TRITD3Av1G240160 Triticum turgidum HOM05M003486 ORTHO05M002466 1.1e-16 89.4 52 76.9
Asa2G00021 Allium sativum HOM05M003486 ORTHO05M002466 1.4e-16 89.0 72 58.3
Asa0G02650 Allium sativum HOM05M003486 ORTHO05M002466 5.3e-16 87.0 97 48.5
Solyc10g006910.3 Solanum lycopersicum HOM05M003486 ORTHO05M002466 9.1e-16 86.3 74 55.4
Misin08G164600 Miscanthus sinensis HOM05M003486 ORTHO05M002466 3.5e-15 84.3 72 56.9
Zosma07g02140 Zostera marina HOM05M000431 ORTHO05M000765 7.7e-15 83.2 88 46.6
SEGI_19238 Sequoiadendron giganteum HOM05M003486 ORTHO05M002466 1.3e-14 82.4 54 72.2
Asa4G02001 Allium sativum HOM05M003486 ORTHO05M002466 1.4e-13 79.0 58 67.2
TRIDC5BG040430 Triticum dicoccoides HOM05M003486 ORTHO05M002466 1.9e-13 78.6 89 49.4
Asa5G00078 Allium sativum HOM05M003486 ORTHO05M002466 5.5e-13 77.0 57 63.2
SEGI_40200 Sequoiadendron giganteum HOM05M002240 ORTHO05M004214 1.5e-10 68.9 102 38.2
Pp3c2_23477 Physcomitrium patens HOM05M002240 ORTHO05M002466 2.0e-10 68.6 102 35.3
Aco025652 Ananas comosus HOM05M003486 ORTHO05M002466 5.7e-10 67.0 56 64.3
Aco026839 Ananas comosus HOM05M003486 ORTHO05M002466 5.7e-10 67.0 56 64.3
SMO059G0001 Selaginella moellendorffii HOM05M002240 ORTHO05M002466 7.4e-10 66.6 104 33.7
SMO172G0196 Selaginella moellendorffii HOM05M002240 ORTHO05M002466 7.4e-10 66.6 104 33.7
Asa0G01349 Allium sativum HOM05M003486 ORTHO05M002466 9.7e-10 66.2 40 70.0
Solyc00g500100.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 6.3e-09 63.5 113 34.5
Solyc00g500117.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 6.3e-09 63.5 113 34.5
Solyc00g500245.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 6.3e-09 63.5 113 34.5
Solyc00g500274.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 6.3e-09 63.5 113 34.5
Solyc00g500309.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 6.3e-09 63.5 113 34.5
AagrBONN_evm.TU.Sc2ySwM_117.831 Anthoceros agrestis HOM05M002240 ORTHO05M002466 1.1e-08 62.8 92 35.9
Solyc09g015860.1 Solanum lycopersicum HOM05M002240 ORTHO05M002466 1.4e-08 62.4 113 33.6
AET0Gv20049900 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.8e-08 62.0 55 60.0
ATMG00080 Arabidopsis thaliana HOM05M002240 ORTHO05M002466 2.4e-08 61.6 113 34.5
TraesCS3D03G0435300 Triticum aestivum HOM05M002240 ORTHO05M002466 5.3e-08 60.5 113 33.6
Seita.J007700 Setaria italica HOM05M002240 ORTHO05M002466 9.1e-08 59.7 102 37.3
TRITD2Bv1G203980 Triticum turgidum HOM05M002240 ORTHO05M002466 9.1e-08 59.7 113 32.7
CALSI_Maker00001003 Calamus simplicifolius HOM05M002240 ORTHO05M002466 2.0e-07 58.5 88 37.5
MBI05_g05348_MAGBIO Magnolia biondii HOM05M002240 ORTHO05M004214 2.0e-07 58.5 113 32.7
Aco025662 Ananas comosus HOM05M002240 ORTHO05M004214 2.6e-07 58.2 102 36.3
Misin15G099900 Miscanthus sinensis HOM05M003486 ORTHO05M002466 2.6e-07 58.2 34 76.5
TraesCS3D03G0844800 Triticum aestivum HOM05M002240 ORTHO05M002466 2.6e-07 58.2 113 31.9
CDE02G0251 Ceratophyllum demersum HOM05M002240 ORTHO05M004214 3.5e-07 57.8 113 32.7
GWHGASIY001869 Secale cereale HOM05M002240 ORTHO05M002466 3.5e-07 57.8 113 32.7
TRIDC1BG066780 Triticum dicoccoides HOM05M002240 ORTHO05M002466 3.5e-07 57.8 113 32.7
TRIDC5BG016020 Triticum dicoccoides HOM05M002240 ORTHO05M002466 3.5e-07 57.8 113 32.7
Solyc12g038985.1 Solanum lycopersicum HOM05M002240 ORTHO05M004214 4.5e-07 57.4 99 35.4
TraesCS2B03G1427800 Triticum aestivum HOM05M002240 ORTHO05M002466 4.5e-07 57.4 102 36.3
TraesCS5B03G1333400 Triticum aestivum HOM05M002240 ORTHO05M002466 4.5e-07 57.4 113 32.7
TraesCS5B03G1383700 Triticum aestivum HOM05M002240 ORTHO05M002466 4.5e-07 57.4 113 32.7
TraesCS5B03G0245400 Triticum aestivum HOM05M002240 ORTHO05M002466 5.9e-07 57.0 113 33.6
TRITD5Bv1G045820 Triticum turgidum HOM05M002240 ORTHO05M002466 5.9e-07 57.0 113 33.6
Solyc05g045780.1 Solanum lycopersicum HOM05M002240 ORTHO05M002466 1.0e-06 56.2 84 38.1
TraesCS7B03G1233500 Triticum aestivum HOM05M002240 ORTHO05M002466 1.0e-06 56.2 113 31.9
AET0Gv20038500 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.3e-06 55.8 36 72.2
AET0Gv20047500 Aegilops tauschii HOM05M003486 ORTHO05M002466 1.3e-06 55.8 36 72.2
Cre06.g278224 Chlamydomonas reinhardtii HOM05M002240 ORTHO05M002466 1.3e-06 55.8 104 27.9
Zm00007a00014869 Zea mays B104 HOM05M002240 ORTHO05M004214 1.3e-06 55.8 102 36.3
Zm00007a00045066 Zea mays B104 HOM05M002240 ORTHO05M004214 1.3e-06 55.8 102 36.3
OsKitaake02g253600 Oryza sativa Kitaake HOM05M003486 ORTHO05M002466 2.2e-06 55.1 36 69.4
TRIDC1BG011870 Triticum dicoccoides HOM05M002240 ORTHO05M002466 2.2e-06 55.1 113 31.9
TRITD1Bv1G187820 Triticum turgidum HOM05M002240 ORTHO05M002466 2.2e-06 55.1 113 31.9
TraesCS5D03G1191900 Triticum aestivum HOM05M002240 ORTHO05M002466 3.8e-06 54.3 106 33.0
TraesCS5B03G1385100 Triticum aestivum HOM05M002240 ORTHO05M002466 5.0e-06 53.9 89 36.0
TRIDC7BG057140 Triticum dicoccoides HOM05M002240 ORTHO05M002466 5.0e-06 53.9 113 31.0
OsKitaake12g154201 Oryza sativa Kitaake HOM05M002240 ORTHO05M002466 6.5e-06 53.5 77 39.0
TraesCS4D03G0302500 Triticum aestivum HOM05M002240 ORTHO05M002466 8.5e-06 53.1 113 31.0


User provided reference genes

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