Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0209 Marchantia polymorpha HOM05M007459 ORTHO05M009077 8.9e-97 356.3 196 100.0
Pp3c11_2200 Physcomitrium patens HOM05M007459 ORTHO05M009077 1.4e-22 109.8 188 42.6
SEGI_09083 Sequoiadendron giganteum HOM05M007459 ORTHO05M009077 6.1e-21 104.4 101 57.4
ATR0680G335 Amborella trichopoda HOM05M007459 ORTHO05M009077 1.0e-20 103.6 103 52.4
Solyc08g081130.4 Solanum lycopersicum HOM05M007459 ORTHO05M009077 5.1e-20 101.3 103 49.5
MBI18_g42863_MAGBIO Magnolia biondii HOM05M007459 ORTHO05M009077 6.7e-20 100.9 99 52.5
evm.TU.AsparagusV1_01.852.V1.1 Asparagus officinalis HOM05M007459 ORTHO05M009077 2.2e-18 95.9 99 49.5
Ma11_g03730 Musa acuminata HOM05M007459 ORTHO05M009077 2.2e-18 95.9 108 48.1
DDU148G0006 Dioscorea dumetorum HOM05M002173 ORTHO05M005174 3.7e-18 95.1 185 36.8
DDU914G0123 Dioscorea dumetorum HOM05M002173 ORTHO05M005174 3.7e-18 95.1 185 36.8
Zjn_sc00060.1.g01780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M007459 ORTHO05M009077 8.2e-18 94.0 113 46.0
AT4G23330 Arabidopsis thaliana HOM05M007459 ORTHO05M009077 1.8e-17 92.8 135 39.3
Pahal.2G373600 Panicum hallii HOM05M007459 ORTHO05M009077 1.8e-17 92.8 109 45.9
Ot_Chr4_g01021 Oropetium thomaeum HOM05M007459 ORTHO05M009077 2.4e-17 92.4 109 44.0
Misin04G286600 Miscanthus sinensis HOM05M007459 ORTHO05M009077 4.1e-17 91.7 113 44.2
PH02Gene06922 Phyllostachys edulis HOM05M007459 ORTHO05M009077 4.1e-17 91.7 113 43.4
Sspon.02G0007480-2B Saccharum spontaneum HOM05M007459 ORTHO05M009077 4.1e-17 91.7 113 44.2
Seita.2G315400 Setaria italica HOM05M007459 ORTHO05M009077 4.1e-17 91.7 113 43.4
Sevir.2G326500 Setaria viridis HOM05M007459 ORTHO05M009077 4.1e-17 91.7 113 43.4
GWHGAORA007119 Cenchrus purpureus HOM05M007459 ORTHO05M009077 5.3e-17 91.3 108 45.4
Bradi1g27745 Brachypodium distachyon HOM05M007459 ORTHO05M009077 9.1e-17 90.5 109 45.0
OB07G20440 Oryza brachyantha HOM05M007459 ORTHO05M009077 9.1e-17 90.5 109 45.0
GWHGAZTO091404 Oryza alta HOM05M007459 ORTHO05M009077 1.2e-16 90.1 109 44.0
OsR498G0714311900.01 Oryza sativa ssp. indica HOM05M007459 ORTHO05M009077 2.6e-16 89.0 109 43.1
V3.Lp_chr2_0G8658 Lolium perenne HOM05M007459 ORTHO05M009077 3.4e-16 88.6 113 41.6
CALSI_Maker00042605 Calamus simplicifolius HOM05M007459 ORTHO05M009077 4.5e-16 88.2 81 55.6
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05M007459 ORTHO05M009077 5.9e-16 87.8 89 52.8
GWHGAZTO043834 Oryza alta HOM05M007459 ORTHO05M009077 5.9e-16 87.8 109 43.1
Sobic.002G303200 Sorghum bicolor HOM05M007459 ORTHO05M009077 5.9e-16 87.8 92 47.8
OsKitaake07g142200 Oryza sativa Kitaake HOM05M007459 ORTHO05M009077 7.7e-16 87.4 109 42.2
Os07g0483400 Oryza sativa ssp. japonica HOM05M007459 ORTHO05M009077 7.7e-16 87.4 109 42.2
Asa8G04660 Allium sativum HOM05M007459 ORTHO05M009077 1.0e-15 87.0 92 51.1
Potri.001G103800 Populus trichocarpa HOM05M007459 ORTHO05M009077 1.0e-15 87.0 116 38.8
TraesCS2A03G0552600 Triticum aestivum HOM05M007459 ORTHO05M009077 2.2e-15 85.9 109 42.2
TraesCS2D03G0501600 Triticum aestivum HOM05M007459 ORTHO05M009077 2.2e-15 85.9 109 42.2
TRIDC2AG032080 Triticum dicoccoides HOM05M007459 ORTHO05M009077 2.2e-15 85.9 109 42.2
GWHGASIY008096 Secale cereale HOM05M007459 ORTHO05M009077 3.8e-15 85.1 109 41.3
GWHGASIY031942 Secale cereale HOM05M007459 ORTHO05M009077 3.8e-15 85.1 109 41.3
EJB05_12581 Eragrostis curvula HOM05M007459 ORTHO05M009077 5.0e-15 84.7 95 50.5
TraesCS2B03G0660200 Triticum aestivum HOM05M007459 ORTHO05M009077 6.5e-15 84.3 109 41.3
TRITD2Bv1G113660 Triticum turgidum HOM05M007459 ORTHO05M009077 6.5e-15 84.3 109 41.3
Zosma01g24190 Zostera marina HOM05M007459 ORTHO05M009077 8.5e-15 84.0 104 45.2
Zm00001eb104990 Zea mays B73 HOM05M007459 ORTHO05M009077 4.2e-14 81.6 81 50.6
Glyma.05G208200 Glycine max HOM05M007459 ORTHO05M009077 5.5e-14 81.3 84 48.8
Misin03G266800 Miscanthus sinensis HOM05M007459 ORTHO05M009077 3.6e-13 78.6 91 48.4
Spipo16G0037200 Spirodela polyrhiza HOM05M007459 ORTHO05M009077 3.6e-13 78.6 72 51.4
TRIDC2BG036630 Triticum dicoccoides HOM05M007459 ORTHO05M009077 1.4e-12 76.6 85 48.2
CDE11G0686 Ceratophyllum demersum HOM05M002998 ORTHO05M009077 3.0e-12 75.5 153 34.6
Horvu_MOREX_4H01G468000 Hordeum vulgare HOM05M007459 ORTHO05M009077 6.7e-12 74.3 90 38.9
Aco012027 Ananas comosus HOM05M007459 ORTHO05M009077 6.3e-10 67.8 83 42.2
SMO329G0027 Selaginella moellendorffii HOM05M038878 ORTHO05M009077 6.3e-10 67.8 75 49.3
SMO358G0504 Selaginella moellendorffii HOM05M038878 ORTHO05M009077 6.3e-10 67.8 75 49.3
EJB05_53503 Eragrostis curvula HOM05M007459 ORTHO05M009077 1.8e-09 66.2 80 47.5
AET2Gv20527000 Aegilops tauschii HOM05M007459 ORTHO05M009077 4.5e-08 61.6 76 44.7
CDE09G0994 Ceratophyllum demersum HOM05M007459 ORTHO05M009077 4.5e-08 61.6 64 50.0
Zm00007a00013498 Zea mays B104 HOM05M007459 ORTHO05M009077 5.9e-08 61.2 65 46.2
Zjn_sc00001.1.g09940.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M007459 ORTHO05M009077 5.0e-07 58.2 52 46.2


User provided reference genes

Program Settings