Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0084 Marchantia polymorpha HOM05M004566 ORTHO05M005401 8.5e-48 192.6 98 100.0
SEGI_01220 Sequoiadendron giganteum HOM05M004566 ORTHO05M005401 1.0e-45 185.7 98 94.9
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05M004566 ORTHO05M005401 3.9e-45 183.7 97 91.8
CDE06G1840 Ceratophyllum demersum HOM05M004566 ORTHO05M005401 2.6e-44 181.0 98 90.8
CDE08G0955 Ceratophyllum demersum HOM05M004566 ORTHO05M005401 2.6e-44 181.0 98 90.8
Glyma.16G167900 Glycine max HOM05M004566 ORTHO05M005401 2.6e-44 181.0 98 91.8
Glyma.02G082300 Glycine max HOM05M004566 ORTHO05M005401 4.4e-44 180.3 98 91.8
Pp3c24_12260 Physcomitrium patens HOM05M004566 ORTHO05M005401 4.4e-44 180.3 98 92.9
Asa2G03043 Allium sativum HOM05M004566 ORTHO05M005401 5.7e-44 179.9 98 91.8
Ma05_g28470 Musa acuminata HOM05M004566 ORTHO05M005401 1.7e-43 178.3 98 90.8
Potri.005G191600 Populus trichocarpa HOM05M004566 ORTHO05M005401 1.7e-43 178.3 98 89.8
OB01G47230 Oryza brachyantha HOM05M004566 ORTHO05M005401 2.2e-43 177.9 97 90.7
Horvu_MOREX_1H01G482000 Hordeum vulgare HOM05M004566 ORTHO05M005401 3.7e-43 177.2 96 89.6
Ma03_g23620 Musa acuminata HOM05M004566 ORTHO05M005401 3.7e-43 177.2 98 89.8
GWHGASIY003593 Secale cereale HOM05M004566 ORTHO05M005401 3.7e-43 177.2 96 89.6
GWHGASIY003594 Secale cereale HOM05M004566 ORTHO05M005401 3.7e-43 177.2 96 89.6
TraesCS1A03G0691100 Triticum aestivum HOM05M004566 ORTHO05M005401 3.7e-43 177.2 96 89.6
TraesCS1B03G0788000 Triticum aestivum HOM05M004566 ORTHO05M005401 3.7e-43 177.2 96 89.6
TraesCS1D03G0654900 Triticum aestivum HOM05M004566 ORTHO05M005401 3.7e-43 177.2 96 89.6
TRIDC1AG040710 Triticum dicoccoides HOM05M004566 ORTHO05M005401 3.7e-43 177.2 96 89.6
CALSI_Maker00032544 Calamus simplicifolius HOM05M004566 ORTHO05M005401 4.8e-43 176.8 98 89.8
DDU059G0222 Dioscorea dumetorum HOM05M004566 ORTHO05M005401 4.8e-43 176.8 98 89.8
DDU196G0004 Dioscorea dumetorum HOM05M004566 ORTHO05M005401 4.8e-43 176.8 98 89.8
DDU198G0006 Dioscorea dumetorum HOM05M004566 ORTHO05M005401 4.8e-43 176.8 98 89.8
Ot_Chr5_gn36054 Oropetium thomaeum HOM05M004566 ORTHO05M005401 4.8e-43 176.8 98 88.8
Potri.002G068800 Populus trichocarpa HOM05M004566 ORTHO05M005401 6.3e-43 176.4 98 88.8
Spipo0G0125600 Spirodela polyrhiza HOM05M004566 ORTHO05M005401 6.3e-43 176.4 98 89.8
EJB05_35736 Eragrostis curvula HOM05M004566 ORTHO05M005401 8.2e-43 176.0 98 87.8
MBI09_g18621_MAGBIO Magnolia biondii HOM05M004566 ORTHO05M005401 8.2e-43 176.0 97 89.7
HPP92_016150 Vanilla planifolia HOM05M004566 ORTHO05M005401 1.1e-42 175.6 98 88.8
Aco018237 Ananas comosus HOM05M004566 ORTHO05M005401 1.4e-42 175.3 98 87.8
DDU029G0176 Dioscorea dumetorum HOM05M004566 ORTHO05M005401 1.8e-42 174.9 98 88.8
Misin06G325100 Miscanthus sinensis HOM05M004566 ORTHO05M005401 1.8e-42 174.9 97 89.7
Sspon.03G0029230-1B Saccharum spontaneum HOM05M004566 ORTHO05M005401 1.8e-42 174.9 97 89.7
Sspon.03G0029230-2D Saccharum spontaneum HOM05M004566 ORTHO05M005401 1.8e-42 174.9 97 89.7
Sspon.03G0029230-2P Saccharum spontaneum HOM05M004566 ORTHO05M005401 1.8e-42 174.9 97 89.7
Sobic.003G367900 Sorghum bicolor HOM05M004566 ORTHO05M005401 1.8e-42 174.9 97 89.7
Zm00001eb146730 Zea mays B73 HOM05M004566 ORTHO05M005401 1.8e-42 174.9 97 89.7
GWHGAORA003121 Cenchrus purpureus HOM05M004566 ORTHO05M005401 3.1e-42 174.1 96 88.5
GWHGAORA030803 Cenchrus purpureus HOM05M004566 ORTHO05M005401 4.1e-42 173.7 97 88.7
GWHGAORA045557 Cenchrus purpureus HOM05M004566 ORTHO05M005401 4.1e-42 173.7 97 88.7
Dexi5A01G0033460 Digitaria exilis HOM05M004566 ORTHO05M005401 4.1e-42 173.7 97 88.7
Dexi5B01G0033670 Digitaria exilis HOM05M004566 ORTHO05M005401 4.1e-42 173.7 97 88.7
Ot_Chr3_gn34259 Oropetium thomaeum HOM05M004566 ORTHO05M005401 4.1e-42 173.7 97 88.7
Seita.5G393500 Setaria italica HOM05M004566 ORTHO05M005401 4.1e-42 173.7 97 88.7
Sevir.5G398900 Setaria viridis HOM05M004566 ORTHO05M005401 4.1e-42 173.7 97 88.7
Misin05G324700 Miscanthus sinensis HOM05M004566 ORTHO05M005401 7.0e-42 172.9 97 88.7
Solyc11g005370.2 Solanum lycopersicum HOM05M004566 ORTHO05M005401 7.0e-42 172.9 98 85.7
GWHGAORA038066 Cenchrus purpureus HOM05M004566 ORTHO05M005401 9.1e-42 172.6 96 87.5
Pahal.5G077800 Panicum hallii HOM05M004566 ORTHO05M005401 9.1e-42 172.6 97 87.6
SMO169G0100 Selaginella moellendorffii HOM05M004566 ORTHO05M005401 9.1e-42 172.6 98 85.7
Bradi2g56060 Brachypodium distachyon HOM05M004566 ORTHO05M005401 1.2e-41 172.2 97 86.6
Dexi3A01G0022650 Digitaria exilis HOM05M004566 ORTHO05M005401 1.2e-41 172.2 96 87.5
Dexi3B01G0023350 Digitaria exilis HOM05M004566 ORTHO05M005401 1.2e-41 172.2 96 87.5
V3.Lp_chr3_0G20366 Lolium perenne HOM05M004566 ORTHO05M005401 1.2e-41 172.2 97 86.6
Pahal.3G262800 Panicum hallii HOM05M004566 ORTHO05M005401 1.2e-41 172.2 96 87.5
PH02Gene38196 Phyllostachys edulis HOM05M004566 ORTHO05M005401 1.2e-41 172.2 97 87.6
Seita.3G227700 Setaria italica HOM05M004566 ORTHO05M005401 1.2e-41 172.2 96 87.5
Sevir.3G232800 Setaria viridis HOM05M004566 ORTHO05M005401 1.2e-41 172.2 96 87.5
AET3Gv20844000 Aegilops tauschii HOM05M004566 ORTHO05M005401 2.6e-41 171.0 97 85.6
Horvu_MOREX_3H01G510700 Hordeum vulgare HOM05M004566 ORTHO05M005401 2.6e-41 171.0 97 85.6
GWHGASIY016805 Secale cereale HOM05M004566 ORTHO05M005401 2.6e-41 171.0 97 85.6
TraesCS3A03G0893400 Triticum aestivum HOM05M004566 ORTHO05M005401 2.6e-41 171.0 97 85.6
TraesCS3D03G0820800 Triticum aestivum HOM05M004566 ORTHO05M005401 2.6e-41 171.0 97 85.6
OsKitaake01g411900 Oryza sativa Kitaake HOM05M004566 ORTHO05M005401 3.5e-41 170.6 93 90.3
OsR498G0102401800.01 Oryza sativa ssp. indica HOM05M004566 ORTHO05M005401 3.5e-41 170.6 93 90.3
Os01g0866700 Oryza sativa ssp. japonica HOM05M004566 ORTHO05M005401 3.5e-41 170.6 93 90.3
Zosma02g04860 Zostera marina HOM05M004566 ORTHO05M005401 3.5e-41 170.6 93 90.3
ATR0772G183 Amborella trichopoda HOM05M004566 ORTHO05M005401 7.7e-41 169.5 95 89.5
AT1G21190 Arabidopsis thaliana HOM05M004566 ORTHO05M005401 7.7e-41 169.5 98 83.7
GWHGAZTO006140 Oryza alta HOM05M004566 ORTHO05M005401 1.0e-40 169.1 93 89.2
AT1G76860 Arabidopsis thaliana HOM05M004566 ORTHO05M005401 3.8e-40 167.2 97 84.5
Cre16.g662300 Chlamydomonas reinhardtii HOM05M004566 ORTHO05M005401 3.0e-37 157.5 97 79.4
MCO12G407 Micromonas commoda HOM05M004566 ORTHO05M005401 6.7e-37 156.4 93 80.6
PH02Gene20139 Phyllostachys edulis HOM05M004566 ORTHO05M005401 2.2e-35 151.4 81 90.1
Zjn_sc00034.1.g05880.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004566 ORTHO05M005401 4.8e-35 150.2 88 86.4
Sspon.03G0029230-3P Saccharum spontaneum HOM05M004566 ORTHO05M005401 3.1e-34 147.5 82 89.0
PRCOL_00001118 Prasinoderma coloniale HOM05M004566 ORTHO05M005401 2.2e-32 141.4 97 69.1
Sspon.03G0029230-1P Saccharum spontaneum HOM05M004566 ORTHO05M005401 2.7e-30 134.4 97 74.2
GWHGASIY003499 Secale cereale HOM05M004566 ORTHO05M005401 4.7e-30 133.7 101 70.3
evm.TU.AsparagusV1_02.751.V1.1 Asparagus officinalis HOM05M004566 ORTHO05M005401 8.0e-30 132.9 83 81.9
Zjn_sc00009.1.g05350.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004566 ORTHO05M005401 6.7e-29 129.8 72 90.3
TRIDC3AG054250 Triticum dicoccoides HOM05M004566 ORTHO05M005401 3.3e-28 127.5 72 86.1
TRIDC3BG060910 Triticum dicoccoides HOM05M004566 ORTHO05M005401 3.3e-28 127.5 72 86.1
Glyma.10G120000 Glycine max HOM05M004566 ORTHO05M005401 4.7e-22 107.1 61 85.2
GWHGAZTO058451 Oryza alta HOM05M006567 ORTHO05M005401 6.1e-22 106.7 65 81.5
TRIDC1BG046330 Triticum dicoccoides HOM05M004566 ORTHO05M005401 1.4e-18 95.5 50 88.0
CBR_g88561 Chara braunii HOM05M000008 ORTHO05M000001 9.8e-12 72.8 60 63.3
Zm00007a00049004 Zea mays B104 HOM05M004566 ORTHO05M005401 2.8e-11 71.2 40 87.5
TRITD1Av1G170230 Triticum turgidum HOM05M000740 ORTHO05M000654 3.7e-11 70.9 39 89.7
TRITD1Bv1G156390 Triticum turgidum HOM05M000740 ORTHO05M000654 3.7e-11 70.9 39 89.7
CALSI_Maker00000222 Calamus simplicifolius HOM05M006567 ORTHO05M008515 2.0e-09 65.1 74 51.4
CALSI_Maker00005747 Calamus simplicifolius HOM05M006567 ORTHO05M008515 2.0e-09 65.1 74 51.4
Sspon.03G0029230-4P Saccharum spontaneum HOM05M004566 ORTHO05M005401 7.8e-09 63.2 32 90.6


User provided reference genes

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