Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0037 Marchantia polymorpha HOM05M005736 ORTHO05M007741 5.7e-303 1042.7 546 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3449 Anthoceros agrestis HOM05M005736 ORTHO05M007741 1.7e-193 679.1 483 70.4
Pp3c10_18400 Physcomitrium patens HOM05M005736 ORTHO05M007741 4.4e-186 654.4 482 69.3
Pp3c3_30340 Physcomitrium patens HOM05M005736 ORTHO05M007741 4.1e-184 647.9 481 68.2
SMO164G0150 Selaginella moellendorffii HOM05M005736 ORTHO05M007741 1.5e-181 639.4 435 72.6
ATR0824G269 Amborella trichopoda HOM05M005736 ORTHO05M007741 4.7e-172 607.8 436 68.1
AT5G14260 Arabidopsis thaliana HOM05M005736 ORTHO05M007741 6.8e-171 604.0 461 65.7
Potri.017G066500 Populus trichocarpa HOM05M005736 ORTHO05M007741 1.5e-170 602.8 441 66.9
p5.00_sc00006_p0037 Elaeis guineensis HOM05M005736 ORTHO05M007741 9.8e-170 600.1 452 65.0
CDE09G0728 Ceratophyllum demersum HOM05M005736 ORTHO05M007741 1.7e-169 599.4 440 67.5
Asa8G04359 Allium sativum HOM05M005736 ORTHO05M007741 3.2e-168 595.1 438 68.0
Glyma.19G076300 Glycine max HOM05M005736 ORTHO05M007741 9.2e-168 593.6 435 66.0
p5.00_sc00034_p0173 Elaeis guineensis HOM05M005736 ORTHO05M007741 2.7e-167 592.0 458 63.3
CBR_g368 Chara braunii HOM05M005736 ORTHO05M007741 3.5e-167 591.7 456 65.1
Glyma.05G074800 Glycine max HOM05M005736 ORTHO05M007741 2.5e-165 585.5 436 65.8
Ma03_g17970 Musa acuminata HOM05M005736 ORTHO05M007741 2.5e-165 585.5 450 64.0
PH02Gene25377 Phyllostachys edulis HOM05M005736 ORTHO05M007741 3.3e-165 585.1 435 65.3
V3.Lp_chr5_0G6180 Lolium perenne HOM05M005736 ORTHO05M007741 5.6e-165 584.3 435 65.7
HPP92_024278 Vanilla planifolia HOM05M005736 ORTHO05M007741 7.3e-165 583.9 435 66.9
Bradi4g39580 Brachypodium distachyon HOM05M005736 ORTHO05M007741 1.4e-163 579.7 435 65.3
PH02Gene50168 Phyllostachys edulis HOM05M005736 ORTHO05M007741 1.4e-163 579.7 435 64.8
OsKitaake12g079500 Oryza sativa Kitaake HOM05M005736 ORTHO05M007741 5.2e-163 577.8 436 64.9
OsR498G1221179700.01 Oryza sativa ssp. indica HOM05M005736 ORTHO05M007741 5.2e-163 577.8 436 64.9
Os12g0236900 Oryza sativa ssp. japonica HOM05M005736 ORTHO05M007741 5.2e-163 577.8 436 64.9
Ot_Chr2_g10650 Oropetium thomaeum HOM05M005736 ORTHO05M007741 8.9e-163 577.0 435 65.5
TraesCS5B03G0289800 Triticum aestivum HOM05M005736 ORTHO05M007741 1.2e-162 576.6 435 64.8
TraesCS5D03G0308900 Triticum aestivum HOM05M005736 ORTHO05M007741 1.2e-162 576.6 435 64.8
TRITD5Bv1G058400 Triticum turgidum HOM05M005736 ORTHO05M007741 1.2e-162 576.6 435 64.8
Zosma05g07220 Zostera marina HOM05M005736 ORTHO05M007741 5.8e-162 574.3 450 62.0
TraesCS5A03G0276500 Triticum aestivum HOM05M005736 ORTHO05M007741 7.5e-162 573.9 435 64.6
TRIDC5AG016570 Triticum dicoccoides HOM05M005736 ORTHO05M007741 7.5e-162 573.9 435 64.6
TRITD5Av1G065300 Triticum turgidum HOM05M005736 ORTHO05M007741 7.5e-162 573.9 435 64.6
GWHGASIY025129 Secale cereale HOM05M005736 ORTHO05M007741 8.3e-161 570.5 435 63.9
Zjn_sc00010.1.g03210.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005736 ORTHO05M007741 8.3e-161 570.5 450 64.2
Misin06G213100 Miscanthus sinensis HOM05M005736 ORTHO05M007741 5.4e-160 567.8 436 64.2
Sobic.003G233700 Sorghum bicolor HOM05M005736 ORTHO05M007741 5.4e-160 567.8 436 64.0
GWHGAORA039917 Cenchrus purpureus HOM05M005736 ORTHO05M007741 9.2e-160 567.0 435 63.9
Zm00007a00022691 Zea mays B104 HOM05M005736 ORTHO05M007741 9.2e-160 567.0 435 63.9
Sevir.3G091600 Setaria viridis HOM05M005736 ORTHO05M007741 1.2e-159 566.6 435 63.4
Pahal.3G064700 Panicum hallii HOM05M005736 ORTHO05M007741 2.1e-159 565.8 435 63.7
Seita.3G089500 Setaria italica HOM05M005736 ORTHO05M007741 3.5e-159 565.1 435 63.2
Aco024032 Ananas comosus HOM05M005736 ORTHO05M007741 4.6e-159 564.7 416 68.5
Misin05G238800 Miscanthus sinensis HOM05M005736 ORTHO05M007741 3.0e-158 562.0 436 63.5
EJB05_02941 Eragrostis curvula HOM05M005736 ORTHO05M007741 5.6e-157 557.8 443 63.4
GWHGAZTO066072 Oryza alta HOM05M005736 ORTHO05M007741 5.6e-157 557.8 475 59.4
GWHGAZTO014140 Oryza alta HOM05M005736 ORTHO05M007741 2.0e-154 549.3 482 57.9
evm.TU.AsparagusV1_09.620.V1.1 Asparagus officinalis HOM05M005736 ORTHO05M007741 1.1e-152 543.5 383 70.5
GWHGAORA004984 Cenchrus purpureus HOM05M005736 ORTHO05M007741 2.7e-151 538.9 435 61.1
OB12G16410 Oryza brachyantha HOM05M005736 ORTHO05M007741 1.7e-150 536.2 385 67.5
Dexi3B01G0006340 Digitaria exilis HOM05M005736 ORTHO05M007741 2.3e-150 535.8 489 57.1
Zm00001eb158830 Zea mays B73 HOM05M005736 ORTHO05M007741 3.4e-146 521.9 435 60.2
Zm00001eb359140 Zea mays B73 HOM05M005736 ORTHO05M007741 1.4e-144 516.5 435 59.1
Solyc02g068050.4 Solanum lycopersicum HOM05M005736 ORTHO05M007741 7.1e-144 514.2 362 69.3
DDU733G0018 Dioscorea dumetorum HOM05M005736 ORTHO05M007741 3.0e-142 508.8 531 52.0
SEGI_04738 Sequoiadendron giganteum HOM05M005736 ORTHO05M007741 3.9e-142 508.4 350 69.7
CDE02G1600 Ceratophyllum demersum HOM05M005736 ORTHO05M007741 2.8e-132 475.7 406 61.8
Sspon.03G0010400-1A Saccharum spontaneum HOM05M005736 ORTHO05M007741 2.6e-130 469.2 350 63.4
AET5Gv20281300 Aegilops tauschii HOM05M005736 ORTHO05M007741 9.6e-125 450.7 306 71.6
DDU739G0605 Dioscorea dumetorum HOM05M005736 ORTHO05M007741 2.7e-119 432.6 625 41.4
CALSI_Maker00047623 Calamus simplicifolius HOM05M005736 ORTHO05M007741 2.7e-111 406.0 550 43.1
Dexi3A01G0006400 Digitaria exilis HOM05M005736 ORTHO05M007741 6.3e-108 394.8 489 45.4
Sspon.03G0041570-1C Saccharum spontaneum HOM05M005736 ORTHO05M007741 6.9e-107 391.3 401 52.4
TRIDC5BG019630 Triticum dicoccoides HOM05M005736 ORTHO05M007741 6.1e-95 351.7 271 62.0
Spipo4G0065900 Spirodela polyrhiza HOM05M005736 ORTHO05M007741 3.7e-92 342.4 268 63.4
PRCOL_00004951 Prasinoderma coloniale HOM05M005736 ORTHO05M007741 6.3e-84 315.1 437 41.6
Horvu_MOREX_5H01G190600 Hordeum vulgare HOM05M005736 ORTHO05M007741 1.7e-76 290.4 211 69.2
Horvu_MOREX_5H01G190400 Hordeum vulgare HOM05M005736 ORTHO05M007741 2.8e-63 246.5 213 54.5
Mapoly0016s0035 Marchantia polymorpha HOM05M005736 ORTHO05M007388 4.9e-36 156.0 381 29.7
Pp3c22_6390 Physcomitrium patens HOM05M004692 ORTHO05M007388 9.2e-35 151.8 418 29.2
SMO351G0583 Selaginella moellendorffii HOM05M005736 ORTHO05M007388 1.3e-33 147.9 417 30.2
Misin10G169300 Miscanthus sinensis HOM05M005736 ORTHO05M007741 8.4e-28 128.6 80 73.8
Misin19G117700 Miscanthus sinensis HOM05M005736 ORTHO05M007741 5.4e-27 125.9 79 73.4
DDU473G0252 Dioscorea dumetorum HOM05M004692 ORTHO05M007388 1.3e-23 114.8 310 27.7
Pp3c4_19510 Physcomitrium patens HOM05M004692 ORTHO05M007388 1.6e-23 114.4 352 25.6
SEGI_13327 Sequoiadendron giganteum HOM05M004692 ORTHO05M007388 1.6e-23 114.4 309 27.5
Zosma04g17730 Zostera marina HOM05M004692 ORTHO05M007388 6.2e-23 112.5 352 27.8
AagrBONN_evm.TU.Sc2ySwM_117.735 Anthoceros agrestis HOM05M004692 ORTHO05M007388 1.4e-22 111.3 261 33.3
Zm00007a00001177 Zea mays B104 HOM05M005736 ORTHO05M007741 3.4e-21 106.7 110 45.5
PH02Gene16437 Phyllostachys edulis HOM05M004692 ORTHO05M007388 5.8e-21 105.9 310 26.1
CBR_g3670 Chara braunii HOM05M000008 ORTHO05M000015 7.6e-21 105.5 462 25.5
MCO15G539 Micromonas commoda HOM05M004468 ORTHO05M007388 7.6e-21 105.5 443 27.1
Cre12.g524500 Chlamydomonas reinhardtii HOM05M005736 ORTHO05M007741 1.4e-19 101.3 392 25.3
GWHGAZTO097745 Oryza alta HOM05M004468 ORTHO05M006023 2.1e-18 97.4 401 25.2
Misin03G164300 Miscanthus sinensis HOM05M004468 ORTHO05M006023 7.9e-18 95.5 400 24.8
Zosma01g05050 Zostera marina HOM05M004468 ORTHO05M006023 1.3e-17 94.7 385 24.4
PH02Gene45035 Phyllostachys edulis HOM05M004468 ORTHO05M006023 1.8e-17 94.4 441 24.7
Sspon.02G0037970-1B Saccharum spontaneum HOM05M004468 ORTHO05M006023 5.1e-17 92.8 400 24.2
TraesCS5A03G0585100 Triticum aestivum HOM05M004468 ORTHO05M006023 6.7e-17 92.4 401 22.9
TraesCS5B03G0600700 Triticum aestivum HOM05M004468 ORTHO05M006023 6.7e-17 92.4 438 22.8
TRIDC5AG036510 Triticum dicoccoides HOM05M004468 ORTHO05M006023 6.7e-17 92.4 401 22.9
TRITD5Bv1G135610 Triticum turgidum HOM05M004468 ORTHO05M006023 6.7e-17 92.4 439 22.6
AET5Gv20555600 Aegilops tauschii HOM05M004468 ORTHO05M006023 8.7e-17 92.0 439 22.6
TraesCS5D03G0551300 Triticum aestivum HOM05M004468 ORTHO05M006023 8.7e-17 92.0 439 22.6
Sspon.02G0014840-1A Saccharum spontaneum HOM05M004468 ORTHO05M006023 1.1e-16 91.7 400 24.5
OsKitaake09g096400 Oryza sativa Kitaake HOM05M004468 ORTHO05M006023 1.5e-16 91.3 401 24.4
OsR498G0917436000.01 Oryza sativa ssp. indica HOM05M004468 ORTHO05M006023 1.5e-16 91.3 401 24.4
Os09g0411650 Oryza sativa ssp. japonica HOM05M004468 ORTHO05M006023 1.5e-16 91.3 401 24.4
Misin04G193200 Miscanthus sinensis HOM05M004468 ORTHO05M006023 3.3e-16 90.1 396 24.5
Spipo2G0036000 Spirodela polyrhiza HOM05M004468 ORTHO05M006023 3.3e-16 90.1 399 23.6
Pp3c24_9610 Physcomitrium patens HOM05M004692 ORTHO05M001405 4.3e-16 89.7 485 23.3
Dexi2B01G0016290 Digitaria exilis HOM05M004468 ORTHO05M006023 7.4e-16 89.0 400 24.0
Zm00007a00009013 Zea mays B104 HOM05M004468 ORTHO05M006023 9.6e-16 88.6 401 23.9
Dexi2A01G0017320 Digitaria exilis HOM05M004468 ORTHO05M006023 1.3e-15 88.2 401 23.9
Pahal.2G261200 Panicum hallii HOM05M004468 ORTHO05M006023 2.1e-15 87.4 437 22.9
SEGI_35933 Sequoiadendron giganteum HOM05M005736 ORTHO05M007741 2.1e-15 87.4 127 43.3
GWHGASIY038715 Secale cereale HOM05M004468 ORTHO05M006023 3.7e-15 86.7 401 22.4
Aco001081 Ananas comosus HOM05M004468 ORTHO05M006023 4.8e-15 86.3 396 23.5
SMO144G0198 Selaginella moellendorffii HOM05M004692 ORTHO05M001405 6.2e-15 85.9 452 24.1
Asa6G06249 Allium sativum HOM05M004468 ORTHO05M006023 8.1e-15 85.5 382 24.1
SMO141G0013 Selaginella moellendorffii HOM05M007794 ORTHO05M008797 1.4e-14 84.7 404 23.3
Horvu_MOREX_5H01G380800 Hordeum vulgare HOM05M004468 ORTHO05M006023 1.8e-14 84.3 401 22.7
Pp3c3_27330 Physcomitrium patens HOM05M007794 ORTHO05M008797 1.8e-14 84.3 307 25.7
GWHGAZTO051305 Oryza alta HOM05M004468 ORTHO05M006023 4.0e-14 83.2 432 23.1
Mapoly0068s0008 Marchantia polymorpha HOM05M007794 ORTHO05M008797 9.0e-14 82.0 303 25.4
Ot_Chr2_g06047 Oropetium thomaeum HOM05M004468 ORTHO05M006023 9.0e-14 82.0 401 24.7
Sspon.02G0014840-1P Saccharum spontaneum HOM05M004468 ORTHO05M006023 1.5e-13 81.3 405 25.4
V3.Lp_chr5_0G12674 Lolium perenne HOM05M004468 ORTHO05M006023 2.0e-13 80.9 401 22.7
Ma07_g22620 Musa acuminata HOM05M004468 ORTHO05M006023 2.0e-13 80.9 387 24.8
Pp3c19_10210 Physcomitrium patens HOM05M007794 ORTHO05M008797 2.0e-13 80.9 265 27.2
SMO367G0191 Selaginella moellendorffii HOM05M007794 ORTHO05M008797 5.8e-13 79.3 267 27.3
SMO180G0001 Selaginella moellendorffii HOM05M007794 ORTHO05M008797 9.9e-13 78.6 332 24.7
HPP92_021203 Vanilla planifolia HOM05M007794 ORTHO05M008797 1.7e-12 77.8 411 20.9
CDE07G0572 Ceratophyllum demersum HOM05M004468 ORTHO05M006023 2.9e-12 77.0 396 24.5
AagrBONN_evm.TU.Sc2ySwM_228.2225 Anthoceros agrestis HOM05M004692 ORTHO05M001405 4.9e-12 76.3 312 24.0
SMO169G0173 Selaginella moellendorffii HOM05M006125 ORTHO05M007940 6.4e-12 75.9 319 24.8
Ma11_g22910 Musa acuminata HOM05M007794 ORTHO05M008797 8.4e-12 75.5 275 24.4
AT1G14030 Arabidopsis thaliana HOM05M004468 ORTHO05M006023 1.1e-11 75.1 399 22.8
Sobic.002G199000 Sorghum bicolor HOM05M004468 ORTHO05M006023 1.1e-11 75.1 403 25.3
Ma07_g22590 Musa acuminata HOM05M004468 ORTHO05M006023 5.5e-11 72.8 376 24.5
AagrBONN_evm.TU.Sc2ySwM_228.2416 Anthoceros agrestis HOM05M004468 ORTHO05M006023 7.1e-11 72.4 392 23.5
Solyc05g013160.4 Solanum lycopersicum HOM05M004468 ORTHO05M006023 1.2e-10 71.6 388 21.6
SMO340G0223 Selaginella moellendorffii HOM05M007794 ORTHO05M008797 2.7e-10 70.5 309 24.3
GWHGAORA008164 Cenchrus purpureus HOM05M004468 ORTHO05M006023 6.0e-10 69.3 340 23.5
MBI02_g14233_MAGBIO Magnolia biondii HOM05M004468 ORTHO05M006023 7.9e-10 68.9 194 24.7
OB09G16630 Oryza brachyantha HOM05M004468 ORTHO05M006023 1.3e-09 68.2 194 24.2
SMO367G0558 Selaginella moellendorffii HOM05M004468 ORTHO05M006023 2.3e-09 67.4 348 24.4
SMO367G1161 Selaginella moellendorffii HOM05M007794 ORTHO05M008797 3.0e-09 67.0 273 26.0
Mapoly0146s0042 Marchantia polymorpha HOM05M006555 ORTHO05M007879 5.1e-09 66.2 393 23.4
GWHGAZTO058607 Oryza alta HOM05M006125 ORTHO05M007940 8.7e-09 65.5 284 23.6
CDE04G2362 Ceratophyllum demersum HOM05M004468 ORTHO05M006023 1.1e-08 65.1 380 22.4
PH02Gene15694 Phyllostachys edulis HOM05M004692 ORTHO05M007388 5.6e-08 62.8 164 26.8
DDU049G0590 Dioscorea dumetorum HOM05M004468 ORTHO05M006023 7.4e-08 62.4 169 26.0
DDU374G0011 Dioscorea dumetorum HOM05M004468 ORTHO05M006023 7.4e-08 62.4 169 26.0
Ot_Chr3_g12979 Oropetium thomaeum HOM05M006125 ORTHO05M007940 7.4e-08 62.4 325 22.2
SMO356G0148 Selaginella moellendorffii HOM05M006329 ORTHO05M008574 9.6e-08 62.0 372 23.1
GWHGAZTO006264 Oryza alta HOM05M006125 ORTHO05M007940 1.3e-07 61.6 323 23.8
TRITD5Av1G144980 Triticum turgidum HOM05M004468 ORTHO05M006023 1.3e-07 61.6 169 23.1
PH02Gene10689 Phyllostachys edulis HOM05M006125 ORTHO05M007940 1.6e-07 61.2 318 23.0
TRIDC5BG038520 Triticum dicoccoides HOM05M004468 ORTHO05M006023 1.6e-07 61.2 194 22.2
HPP92_022004 Vanilla planifolia HOM05M006125 ORTHO05M007940 2.1e-07 60.8 383 22.7
EJB05_18229 Eragrostis curvula HOM05M006125 ORTHO05M007940 2.8e-07 60.5 325 22.8
Aco010997 Ananas comosus HOM05M007794 ORTHO05M008797 4.8e-07 59.7 224 22.8
evm.TU.AsparagusV1_05.3473.V1.1 Asparagus officinalis HOM05M006555 ORTHO05M007879 8.2e-07 58.9 390 24.4
Potri.004G081400 Populus trichocarpa HOM05M006098 ORTHO05M007411 8.2e-07 58.9 118 30.5
AagrBONN_evm.TU.Sc2ySwM_117.653 Anthoceros agrestis HOM05M006555 ORTHO05M007879 1.4e-06 58.2 245 24.5
MBI06_g19632_MAGBIO Magnolia biondii HOM05M006098 ORTHO05M007411 2.4e-06 57.4 232 24.1
SEGI_35790 Sequoiadendron giganteum HOM05M006125 ORTHO05M007940 2.4e-06 57.4 208 25.5
CALSI_Maker00000617 Calamus simplicifolius HOM05M004468 ORTHO05M006023 3.1e-06 57.0 180 23.3
AT5G17240 Arabidopsis thaliana HOM05M006098 ORTHO05M007411 4.0e-06 56.6 367 21.5
EJB05_50468 Eragrostis curvula HOM05M006098 ORTHO05M007411 6.9e-06 55.8 296 22.6
EJB05_12760 Eragrostis curvula HOM05M006098 ORTHO05M007411 9.0e-06 55.5 296 22.6


User provided reference genes

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