Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g33444_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M012920 4.3e-81 303.9 161 100.0
MBI03_g18483_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M012920 2.4e-63 245.0 155 87.1
MBI18_g33401_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M012920 9.9e-62 239.6 155 84.5
MBI11_g41494_MAGBIO Magnolia biondii HOM05M002989 ORTHO05M012920 1.1e-39 166.4 109 81.7
MBI03_g18482_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M004202 1.0e-37 159.8 91 93.4
MBI04_g11121_MAGBIO Magnolia biondii HOM05M000876 ORTHO05M017870 1.3e-37 159.5 104 81.7
MBI08_g05568_MAGBIO Magnolia biondii HOM05M001269 ORTHO05M012920 2.2e-37 158.7 132 68.9
Potri.001G289200 Populus trichocarpa HOM05M003019 ORTHO05M004202 3.0e-34 148.3 91 83.5
CDE06G0012 Ceratophyllum demersum HOM05M003019 ORTHO05M004202 6.7e-34 147.1 91 85.7
Potri.009G084500 Populus trichocarpa HOM05M003019 ORTHO05M004202 6.7e-34 147.1 91 81.3
Glyma.01G241300 Glycine max HOM05M003019 ORTHO05M004202 1.1e-33 146.4 91 81.3
Glyma.11G002600 Glycine max HOM05M003019 ORTHO05M004202 1.1e-33 146.4 91 81.3
CALSI_Maker00044339 Calamus simplicifolius HOM05M003019 ORTHO05M004202 2.0e-33 145.6 94 83.0
p5.00_sc00063_p0008 Elaeis guineensis HOM05M003019 ORTHO05M004202 2.0e-33 145.6 91 85.7
Solyc01g106770.4 Solanum lycopersicum HOM05M003019 ORTHO05M004202 1.7e-32 142.5 91 80.2
ATR0753G079 Amborella trichopoda HOM05M003019 ORTHO05M004202 2.2e-32 142.1 90 83.3
CALSI_Maker00011685 Calamus simplicifolius HOM05M003019 ORTHO05M004202 2.2e-32 142.1 95 82.1
SEGI_12344 Sequoiadendron giganteum HOM05M003019 ORTHO05M004202 2.2e-32 142.1 91 79.1
SEGI_32787 Sequoiadendron giganteum HOM05M003019 ORTHO05M004202 2.2e-32 142.1 91 79.1
Zosma06g02840 Zostera marina HOM05M003019 ORTHO05M004202 3.7e-32 141.4 91 82.4
HPP92_016412 Vanilla planifolia HOM05M003019 ORTHO05M004202 1.4e-31 139.4 91 79.1
DDU784G0035 Dioscorea dumetorum HOM05M003019 ORTHO05M004202 4.1e-31 137.9 91 81.3
DDU801G0210 Dioscorea dumetorum HOM05M003019 ORTHO05M004202 4.1e-31 137.9 91 81.3
Asa6G06470 Allium sativum HOM05M003019 ORTHO05M004202 5.3e-31 137.5 91 79.1
Ma04_g01290 Musa acuminata HOM05M003019 ORTHO05M004202 5.3e-31 137.5 91 79.1
Asa1G00450 Allium sativum HOM05M003019 ORTHO05M004202 9.1e-31 136.7 91 79.1
AT1G50030 Arabidopsis thaliana HOM05M003019 ORTHO05M004202 1.3e-29 132.9 90 76.7
GWHGAORA002675 Cenchrus purpureus HOM05M003019 ORTHO05M004202 2.2e-29 132.1 91 76.9
Dexi3A01G0026460 Digitaria exilis HOM05M003019 ORTHO05M004202 2.2e-29 132.1 91 76.9
Dexi3B01G0027280 Digitaria exilis HOM05M003019 ORTHO05M004202 2.2e-29 132.1 91 76.9
Pahal.3G315200 Panicum hallii HOM05M003019 ORTHO05M004202 2.2e-29 132.1 91 76.9
Seita.3G273900 Setaria italica HOM05M003019 ORTHO05M004202 2.2e-29 132.1 91 76.9
Sevir.3G281300 Setaria viridis HOM05M003019 ORTHO05M004202 2.2e-29 132.1 91 76.9
Ot_Chr7_g10366 Oropetium thomaeum HOM05M003019 ORTHO05M004202 3.8e-29 131.3 91 76.9
PH02Gene44481 Phyllostachys edulis HOM05M003019 ORTHO05M004202 3.8e-29 131.3 91 76.9
Sspon.07G0009760-2B Saccharum spontaneum HOM05M003019 ORTHO05M004202 5.0e-29 131.0 91 75.8
Sobic.009G109200 Sorghum bicolor HOM05M003019 ORTHO05M004202 5.0e-29 131.0 91 75.8
Zm00001eb285840 Zea mays B73 HOM05M003019 ORTHO05M004202 5.0e-29 131.0 91 75.8
Zm00007a00045483 Zea mays B104 HOM05M003019 ORTHO05M004202 5.0e-29 131.0 91 75.8
MBI04_g22054_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M012920 8.5e-29 130.2 75 88.0
Aco002506 Ananas comosus HOM05M003019 ORTHO05M004202 1.9e-28 129.0 91 75.8
GWHGAORA037625 Cenchrus purpureus HOM05M003019 ORTHO05M004202 1.9e-28 129.0 91 78.0
Spipo4G0078200 Spirodela polyrhiza HOM05M003019 ORTHO05M004202 1.9e-28 129.0 85 80.0
Bradi2g28007 Brachypodium distachyon HOM05M003019 ORTHO05M004202 2.5e-28 128.6 91 75.8
EJB05_35086 Eragrostis curvula HOM05M003019 ORTHO05M004202 2.5e-28 128.6 91 75.8
GWHGAZTO033441 Oryza alta HOM05M003019 ORTHO05M004202 5.5e-28 127.5 91 73.6
OB05G17280 Oryza brachyantha HOM05M003019 ORTHO05M004202 5.5e-28 127.5 91 73.6
OsKitaake05g082400 Oryza sativa Kitaake HOM05M003019 ORTHO05M004202 5.5e-28 127.5 91 73.6
OsR498G0510103900.01 Oryza sativa ssp. indica HOM05M003019 ORTHO05M004202 5.5e-28 127.5 91 73.6
Os05g0235300 Oryza sativa ssp. japonica HOM05M003019 ORTHO05M004202 5.5e-28 127.5 91 73.6
GWHGAZTO082483 Oryza alta HOM05M003019 ORTHO05M004202 9.4e-28 126.7 91 73.6
V3.Lp_chr1_0G13938 Lolium perenne HOM05M003019 ORTHO05M004202 1.2e-27 126.3 91 74.7
GWHGASIY003077 Secale cereale HOM05M003019 ORTHO05M004202 1.2e-27 126.3 91 74.7
TraesCS1B03G0687800 Triticum aestivum HOM05M003019 ORTHO05M004202 1.2e-27 126.3 91 74.7
TraesCS1D03G0564400 Triticum aestivum HOM05M003019 ORTHO05M004202 1.2e-27 126.3 91 74.7
TRIDC1BG039700 Triticum dicoccoides HOM05M003019 ORTHO05M004202 1.2e-27 126.3 91 74.7
TRITD1Bv1G137350 Triticum turgidum HOM05M003019 ORTHO05M004202 1.2e-27 126.3 91 74.7
MBI19_g14019_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M004202 2.1e-27 125.6 71 90.1
MBI09_g06128_MAGBIO Magnolia biondii HOM05M014602 ORTHO05M012920 2.7e-27 125.2 136 56.6
TraesCS1A03G0592800 Triticum aestivum HOM05M003019 ORTHO05M004202 4.7e-27 124.4 91 74.7
TRITD1Av1G145560 Triticum turgidum HOM05M003019 ORTHO05M004202 4.7e-27 124.4 91 74.7
Horvu_MOREX_1H01G375600 Hordeum vulgare HOM05M003019 ORTHO05M004202 6.1e-27 124.0 91 72.5
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05M003019 ORTHO05M004202 1.1e-25 119.8 91 65.9
Pp3c6_4910 Physcomitrium patens HOM05M003019 ORTHO05M004202 7.4e-25 117.1 89 67.4
MBI19_g04965_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M012920 1.1e-23 113.2 127 55.9
Sspon.07G0009760-4D Saccharum spontaneum HOM05M003019 ORTHO05M004202 7.0e-23 110.5 75 76.0
Mapoly0047s0119 Marchantia polymorpha HOM05M003019 ORTHO05M004202 9.1e-23 110.2 90 63.3
SMO147G0225 Selaginella moellendorffii HOM05M003019 ORTHO05M004202 4.5e-22 107.8 90 61.1
MBI14_g31102_MAGBIO Magnolia biondii HOM05M002989 ORTHO05M012920 3.3e-17 91.7 54 87.0
MBI17_g34065_MAGBIO Magnolia biondii HOM05M002989 ORTHO05M003268 3.7e-16 88.2 54 87.0
MBI04_g20664_MAGBIO Magnolia biondii HOM05M002989 ORTHO05M003268 6.3e-16 87.4 69 69.6
MBI08_g24353_MAGBIO Magnolia biondii HOM05M004019 ORTHO05M005210 1.1e-15 86.7 51 90.2
Cre09.g400553 Chlamydomonas reinhardtii HOM05M003019 ORTHO05M004202 7.0e-15 84.0 89 50.6
PRCOL_00002418 Prasinoderma coloniale HOM05M003019 ORTHO05M004202 1.2e-14 83.2 91 52.7
MCO06G142 Micromonas commoda HOM05M003019 ORTHO05M004202 7.7e-14 80.5 91 50.5
evm.TU.AsparagusV1_03.1646.V1.1 Asparagus officinalis HOM05M003019 ORTHO05M004202 1.0e-13 80.1 51 84.3
MBI19_g03781_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M012920 1.3e-13 79.7 42 92.9
MBI04_g20667_MAGBIO Magnolia biondii HOM05M002989 ORTHO05M003268 2.7e-11 72.0 75 52.0
MBI17_g13392_MAGBIO Magnolia biondii HOM05M003726 ORTHO05M018253 1.8e-10 69.3 40 87.5
MBI04_g20665_MAGBIO Magnolia biondii HOM05M002989 ORTHO05M003268 2.0e-09 65.9 65 58.5
MBI02_g14193_MAGBIO Magnolia biondii HOM05M004019 ORTHO05M005210 2.6e-09 65.5 33 97.0
MBI04_g20669_MAGBIO Magnolia biondii HOM05M002989 ORTHO05M003268 2.6e-09 65.5 55 60.0
Potri.015G066500 Populus trichocarpa HOM05M002989 ORTHO05M003268 2.8e-08 62.0 64 48.4
MBI05_g43547_MAGBIO Magnolia biondii HOM05M002989 ORTHO05M003268 8.3e-08 60.5 51 64.7
MBI05_g40040_MAGBIO Magnolia biondii HOM05M000056 ORTHO05M005277 1.8e-07 59.3 32 90.6
MBI05_g41336_MAGBIO Magnolia biondii HOM05M004019 ORTHO05M005210 1.8e-07 59.3 32 90.6
CBR_g23926 Chara braunii HOM05M003019 ORTHO05M004202 2.4e-07 58.9 146 31.5
Horvu_MOREX_4H01G428900 Hordeum vulgare HOM05M002989 ORTHO05M003268 3.1e-07 58.5 59 47.5
AET4Gv20685200 Aegilops tauschii HOM05M002989 ORTHO05M003268 1.2e-06 56.6 55 49.1
Potri.012G071900 Populus trichocarpa HOM05M002989 ORTHO05M003268 1.2e-06 56.6 64 45.3
TraesCS4A03G0039800 Triticum aestivum HOM05M002989 ORTHO05M003268 1.2e-06 56.6 55 49.1
TraesCS4B03G0744800 Triticum aestivum HOM05M002989 ORTHO05M003268 1.2e-06 56.6 55 49.1
TraesCS4D03G0665100 Triticum aestivum HOM05M002989 ORTHO05M003268 1.2e-06 56.6 55 49.1
TRIDC4AG003110 Triticum dicoccoides HOM05M002989 ORTHO05M003268 1.2e-06 56.6 55 49.1
TRIDC4BG048540 Triticum dicoccoides HOM05M002989 ORTHO05M003268 1.2e-06 56.6 55 49.1
TRITD4Av1G006860 Triticum turgidum HOM05M002989 ORTHO05M003268 1.2e-06 56.6 55 49.1
TRITD4Bv1G167250 Triticum turgidum HOM05M002989 ORTHO05M003268 1.2e-06 56.6 55 49.1
GWHGASIY037778 Secale cereale HOM05M002989 ORTHO05M003268 2.0e-06 55.8 55 49.1
Aco004191 Ananas comosus HOM05M002989 ORTHO05M003268 2.7e-06 55.5 55 52.7
Zm00001eb005070 Zea mays B73 HOM05M002989 ORTHO05M003268 2.7e-06 55.5 127 30.7
Zm00007a00004895 Zea mays B104 HOM05M002989 ORTHO05M003268 2.7e-06 55.5 127 30.7
Zosma06g10440 Zostera marina HOM05M002989 ORTHO05M003268 2.7e-06 55.5 131 31.3
Solyc06g071120.3 Solanum lycopersicum HOM05M002989 ORTHO05M003268 3.5e-06 55.1 64 46.9
ATR1153G111 Amborella trichopoda HOM05M002989 ORTHO05M003268 4.5e-06 54.7 112 33.9
MBI11_g39916_MAGBIO Magnolia biondii HOM05M003019 ORTHO05M012920 4.5e-06 54.7 28 92.9
Potri.017G089250 Populus trichocarpa HOM05M002989 ORTHO05M003268 4.5e-06 54.7 64 35.9
Asa6G04207 Allium sativum HOM05M002989 ORTHO05M003268 5.9e-06 54.3 72 43.1
GWHGAORA054603 Cenchrus purpureus HOM05M002989 ORTHO05M003268 5.9e-06 54.3 125 30.4


User provided reference genes

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