Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EJB05_48468 Eragrostis curvula HOM05M002722 ORTHO05M003073 0.0e+00 1199.9 640 100.0
EJB05_48469 Eragrostis curvula HOM05M002722 ORTHO05M003073 0.0e+00 1188.3 640 99.2
EJB05_48431 Eragrostis curvula HOM05M002722 ORTHO05M003073 0.0e+00 1139.4 612 100.0
Ot_Chr9_g20287 Oropetium thomaeum HOM05M002722 ORTHO05M003073 9.8e-270 932.6 611 81.8
Sevir.6G206200 Setaria viridis HOM05M002722 ORTHO05M003073 2.3e-258 894.8 622 78.6
Seita.6G198800 Setaria italica HOM05M002722 ORTHO05M003073 6.2e-256 886.7 622 78.5
Misin13G190700 Miscanthus sinensis HOM05M002722 ORTHO05M003073 1.4e-255 885.6 640 74.7
Pahal.6G251600 Panicum hallii HOM05M002722 ORTHO05M003073 1.4e-255 885.6 637 75.0
Sspon.06G0001030-1A Saccharum spontaneum HOM05M002722 ORTHO05M003073 1.7e-253 878.6 624 77.4
Dexi6A01G0017350 Digitaria exilis HOM05M002722 ORTHO05M003073 2.9e-253 877.9 630 74.4
GWHGAORA011868 Cenchrus purpureus HOM05M002722 ORTHO05M003073 3.5e-251 870.9 619 76.9
Sspon.06G0001030-2C Saccharum spontaneum HOM05M002722 ORTHO05M003073 1.1e-241 839.3 640 73.9
Zm00001eb199550 Zea mays B73 HOM05M002722 ORTHO05M003073 3.3e-241 837.8 614 75.6
Zm00007a00017173 Zea mays B104 HOM05M002722 ORTHO05M003073 3.3e-241 837.8 614 75.6
Sspon.06G0001030-3D Saccharum spontaneum HOM05M002722 ORTHO05M003073 2.8e-232 808.1 660 70.8
GWHGAORA036808 Cenchrus purpureus HOM05M002722 ORTHO05M003073 5.1e-226 787.3 575 75.0
PH02Gene07548 Phyllostachys edulis HOM05M002722 ORTHO05M003073 7.9e-211 736.9 623 65.0
GWHGAZTO095806 Oryza alta HOM05M002722 ORTHO05M003073 2.1e-208 728.8 652 62.7
PH02Gene46604 Phyllostachys edulis HOM05M002722 ORTHO05M003073 2.1e-208 728.8 605 65.6
Bradi3g39310 Brachypodium distachyon HOM05M002722 ORTHO05M003073 9.0e-207 723.4 617 64.3
Sobic.007G217500 Sorghum bicolor HOM05M002722 ORTHO05M003073 4.9e-205 717.6 492 79.5
GWHGAZTO049182 Oryza alta HOM05M002722 ORTHO05M003073 1.1e-204 716.5 638 62.1
V3.Lp_chr7_0.1G3480 Lolium perenne HOM05M002722 ORTHO05M003073 1.6e-203 712.6 621 65.7
TraesCS7D03G0536300 Triticum aestivum HOM05M002722 ORTHO05M003073 2.7e-203 711.8 622 63.2
AET7Gv20593000 Aegilops tauschii HOM05M002722 ORTHO05M003073 3.5e-203 711.4 622 63.2
TRIDC7BG021670 Triticum dicoccoides HOM05M002722 ORTHO05M003073 1.3e-202 709.5 622 62.9
TRITD7Bv1G062890 Triticum turgidum HOM05M002722 ORTHO05M003073 1.3e-202 709.5 622 62.9
GWHGASIY020401 Secale cereale HOM05M002722 ORTHO05M003073 1.1e-201 706.4 622 62.7
TraesCS7B03G0371200 Triticum aestivum HOM05M002722 ORTHO05M003073 1.3e-200 703.0 622 62.5
Horvu_MOREX_7H01G287800 Hordeum vulgare HOM05M002722 ORTHO05M003073 5.3e-199 697.6 622 62.1
TRIDC7AG030790 Triticum dicoccoides HOM05M002722 ORTHO05M003073 6.9e-199 697.2 622 61.9
TraesCS7A03G0553400 Triticum aestivum HOM05M002722 ORTHO05M003073 1.0e-197 693.3 622 61.9
OsR498G0816398100.01 Oryza sativa ssp. indica HOM05M002722 ORTHO05M003073 3.3e-193 678.3 585 65.8
OB08G26410 Oryza brachyantha HOM05M002722 ORTHO05M003073 1.4e-183 646.4 544 64.0
TRITD7Av1G088720 Triticum turgidum HOM05M002722 ORTHO05M003073 1.1e-180 636.7 549 63.0
OsKitaake08g201200 Oryza sativa Kitaake HOM05M002722 ORTHO05M003073 9.8e-153 543.9 434 68.7
p5.00_sc00198_p0026 Elaeis guineensis HOM05M002722 ORTHO05M003073 7.8e-134 481.1 613 46.0
CALSI_Maker00009559 Calamus simplicifolius HOM05M002722 ORTHO05M003073 1.1e-127 460.7 613 44.2
Asa4G01831 Allium sativum HOM05M002722 ORTHO05M003073 9.9e-113 411.0 585 41.5
DDU473G0035 Dioscorea dumetorum HOM05M002722 ORTHO05M003073 2.2e-112 409.8 615 42.1
DDU888G0014 Dioscorea dumetorum HOM05M002722 ORTHO05M003073 2.2e-112 409.8 615 42.1
Dexi6B01G0015940 Digitaria exilis HOM05M002722 ORTHO05M003073 2.9e-112 409.5 615 45.0
Ma09_g28120 Musa acuminata HOM05M002722 ORTHO05M003073 4.9e-112 408.7 608 40.8
MBI14_g10260_MAGBIO Magnolia biondii HOM05M002722 ORTHO05M003073 4.2e-111 405.6 607 40.7
Asa4G01826 Allium sativum HOM05M002722 ORTHO05M003073 1.2e-110 404.1 591 40.9
HPP92_018919 Vanilla planifolia HOM05M002722 ORTHO05M003073 3.6e-107 392.5 610 40.0
evm.TU.AsparagusV1_01.504.V1.1 Asparagus officinalis HOM05M002722 ORTHO05M003073 9.3e-103 377.9 600 43.3
Aco000827 Ananas comosus HOM05M002722 ORTHO05M003073 1.5e-100 370.5 555 46.1
AT1G55590 Arabidopsis thaliana HOM05M002722 ORTHO05M003073 3.0e-85 319.7 605 36.2
HPP92_026887 Vanilla planifolia HOM05M002722 ORTHO05M003073 2.2e-72 276.9 607 33.1
Potri.011G169800 Populus trichocarpa HOM05M002722 ORTHO05M003073 5.5e-71 272.3 601 33.1
HPP92_003489 Vanilla planifolia HOM05M002722 ORTHO05M003073 2.1e-70 270.4 597 33.2
SEGI_36055 Sequoiadendron giganteum HOM05M002722 ORTHO05M003073 1.0e-69 268.1 595 33.3
Ma05_g10910 Musa acuminata HOM05M002722 ORTHO05M003073 3.9e-69 266.2 613 33.0
Zosma06g26760 Zostera marina HOM05M002722 ORTHO05M003073 3.5e-65 253.1 603 31.3
Glyma.20G105000 Glycine max HOM05M002722 ORTHO05M003073 1.2e-62 244.6 600 32.0
Potri.004G179571 Populus trichocarpa HOM05M002722 ORTHO05M003073 3.6e-62 243.0 593 31.4
SEGI_07697 Sequoiadendron giganteum HOM05M002722 ORTHO05M003073 1.4e-61 241.1 468 34.6
Solyc07g066240.3 Solanum lycopersicum HOM05M002722 ORTHO05M003073 3.0e-61 240.0 623 31.1
ATR0661G100 Amborella trichopoda HOM05M002722 ORTHO05M003073 2.6e-60 236.9 567 31.0
Aco011984 Ananas comosus HOM05M002722 ORTHO05M003073 3.3e-60 236.5 597 30.8
Asa1G00399 Allium sativum HOM05M002722 ORTHO05M003073 5.7e-60 235.7 566 31.6
Solyc01g111890.3 Solanum lycopersicum HOM05M002722 ORTHO05M003073 1.6e-57 227.6 614 30.5
Zosma03g14410 Zostera marina HOM05M002722 ORTHO05M003073 2.2e-56 223.8 451 34.4
Potri.009G139500 Populus trichocarpa HOM05M002722 ORTHO05M003073 2.9e-56 223.4 595 29.9
GWHGAORA026140 Cenchrus purpureus HOM05M002722 ORTHO05M003073 1.2e-54 218.0 596 30.4
Zm00001eb010350 Zea mays B73 HOM05M002722 ORTHO05M003073 1.6e-54 217.6 207 60.4
GWHGASIY029401 Secale cereale HOM05M002722 ORTHO05M003073 4.7e-54 216.1 592 30.4
Pp3c16_16630 Physcomitrium patens HOM05M002722 ORTHO05M003073 1.4e-53 214.5 603 33.3
Bradi1g76050 Brachypodium distachyon HOM05M002722 ORTHO05M003073 2.0e-52 210.7 595 29.6
GWHGAZTO000368 Oryza alta HOM05M002722 ORTHO05M003073 5.7e-52 209.1 611 29.6
Horvu_MOREX_4H01G477900 Hordeum vulgare HOM05M002722 ORTHO05M003073 1.7e-51 207.6 590 30.0
OsKitaake03g029400 Oryza sativa Kitaake HOM05M002722 ORTHO05M003073 1.7e-51 207.6 595 28.1
OsR498G0305186800.01 Oryza sativa ssp. indica HOM05M002722 ORTHO05M003073 1.7e-51 207.6 595 28.1
Os03g0135400 Oryza sativa ssp. japonica HOM05M002722 ORTHO05M003073 1.7e-51 207.6 595 28.1
Sobic.001G514000 Sorghum bicolor HOM05M002722 ORTHO05M003073 3.7e-51 206.5 596 30.5
Misin01G492900 Miscanthus sinensis HOM05M002722 ORTHO05M003073 6.3e-51 205.7 596 30.4
Sspon.01G0002020-1A Saccharum spontaneum HOM05M002722 ORTHO05M003073 6.3e-51 205.7 594 30.1
GWHGAZTO022003 Oryza alta HOM05M002722 ORTHO05M003073 1.1e-50 204.9 592 28.4
V3.Lp_chr4_0G26998 Lolium perenne HOM05M002722 ORTHO05M003073 1.4e-50 204.5 595 29.2
MisinT418100 Miscanthus sinensis HOM05M002722 ORTHO05M003073 1.4e-50 204.5 596 30.4
PH02Gene28683 Phyllostachys edulis HOM05M002722 ORTHO05M003073 3.1e-50 203.4 594 29.0
Ot_Chr4_g22666 Oropetium thomaeum HOM05M002722 ORTHO05M003073 4.1e-50 203.0 596 29.5
Sspon.01G0002020-3D Saccharum spontaneum HOM05M002722 ORTHO05M003073 4.1e-50 203.0 594 30.1
PH02Gene00812 Phyllostachys edulis HOM05M002722 ORTHO05M003073 1.6e-49 201.1 601 29.0
CDE05G0350 Ceratophyllum demersum HOM05M002722 ORTHO05M003073 5.9e-49 199.1 563 29.5
Zm00007a00034566 Zea mays B104 HOM05M002722 ORTHO05M003073 5.9e-49 199.1 596 29.2
SMO343G0076 Selaginella moellendorffii HOM05M002722 ORTHO05M003073 1.0e-48 198.4 555 32.8
Pahal.9G614500 Panicum hallii HOM05M002722 ORTHO05M003073 1.3e-48 198.0 597 29.0
GWHGAORA054324 Cenchrus purpureus HOM05M002722 ORTHO05M003073 2.2e-48 197.2 595 29.1
Zjn_sc00015.1.g05010.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002722 ORTHO05M003073 2.2e-48 197.2 147 75.5
OB03G12790 Oryza brachyantha HOM05M002722 ORTHO05M003073 3.8e-48 196.4 592 27.0
AagrBONN_evm.TU.Sc2ySwM_368.912 Anthoceros agrestis HOM05M002722 ORTHO05M003073 5.0e-48 196.1 465 32.5
Dexi9B01G0047260 Digitaria exilis HOM05M002722 ORTHO05M003073 5.0e-48 196.1 597 29.0
evm.TU.AsparagusV1_04.2356.V1.1 Asparagus officinalis HOM05M002722 ORTHO05M003073 1.5e-47 194.5 590 30.7
Seita.9G549500 Setaria italica HOM05M002722 ORTHO05M003073 4.2e-47 193.0 592 28.4
Sevir.9G554100 Setaria viridis HOM05M002722 ORTHO05M003073 4.2e-47 193.0 592 28.4
Spipo17G0026800 Spirodela polyrhiza HOM05M002722 ORTHO05M003073 9.4e-47 191.8 609 27.8
Zm00007a00023358 Zea mays B104 HOM05M002722 ORTHO05M003073 1.2e-46 191.4 180 61.7
EJB05_08106 Eragrostis curvula HOM05M002722 ORTHO05M003073 1.6e-46 191.0 597 28.5
TRIDC4BG055520 Triticum dicoccoides HOM05M002722 ORTHO05M003073 3.6e-46 189.9 592 29.1
TRITD4Bv1G187190 Triticum turgidum HOM05M002722 ORTHO05M003073 3.6e-46 189.9 592 29.1
DDU407G0211 Dioscorea dumetorum HOM05M002722 ORTHO05M003073 6.1e-46 189.1 378 34.1
CDE05G3170 Ceratophyllum demersum HOM05M002722 ORTHO05M003073 8.0e-46 188.7 556 29.3
Zm00007a00026262 Zea mays B104 HOM05M002722 ORTHO05M003073 1.4e-45 188.0 202 56.4
AET4Gv20779400 Aegilops tauschii HOM05M002722 ORTHO05M003073 5.2e-45 186.0 584 27.7
TraesCS4D03G0761300 Triticum aestivum HOM05M002722 ORTHO05M003073 5.2e-45 186.0 584 27.7
Zm00007a00003061 Zea mays B104 HOM05M006267 ORTHO05M007363 5.2e-45 186.0 202 55.9
TRITD5Av1G240870 Triticum turgidum HOM05M002722 ORTHO05M003073 6.8e-45 185.7 592 28.7
TraesCS5A03G1177400 Triticum aestivum HOM05M002722 ORTHO05M003073 1.5e-44 184.5 592 28.7
AT2G17020 Arabidopsis thaliana HOM05M002722 ORTHO05M003073 4.1e-42 176.4 608 29.1
CALSI_Maker00042147 Calamus simplicifolius HOM05M002722 ORTHO05M003073 1.3e-40 171.4 621 26.2
TraesCS4B03G0857800 Triticum aestivum HOM05M002722 ORTHO05M003073 1.7e-40 171.0 580 28.3
Zm00007a00031357 Zea mays B104 HOM05M002722 ORTHO05M003073 5.5e-39 166.0 172 57.0
Zm00001eb022020 Zea mays B73 HOM05M001640 ORTHO05M001603 1.6e-38 164.5 135 68.1
p5.00_sc00129_p0033 Elaeis guineensis HOM05M002722 ORTHO05M003073 1.8e-37 161.0 379 30.6
Zm00007a00042816 Zea mays B104 HOM05M002802 ORTHO05M003073 2.0e-36 157.5 172 56.4
Zm00001eb397120 Zea mays B73 HOM05M006267 ORTHO05M007363 3.4e-36 156.8 126 69.8
Zm00001eb089870 Zea mays B73 HOM05M006267 ORTHO05M007363 1.7e-35 154.5 207 49.8
Zm00001eb117020 Zea mays B73 HOM05M002722 ORTHO05M003073 2.4e-34 150.6 136 65.4
TRIDC5AG071590 Triticum dicoccoides HOM05M002722 ORTHO05M003073 1.3e-32 144.8 458 27.9
Os08g0499900 Oryza sativa ssp. japonica HOM05M002722 ORTHO05M003073 2.5e-31 140.6 145 58.6
Dexi9A01G0047840 Digitaria exilis HOM05M002722 ORTHO05M003073 5.6e-31 139.4 379 28.0
Zm00001eb347300 Zea mays B73 HOM05M002722 ORTHO05M003073 1.0e-29 135.2 136 58.8
Zm00007a00047964 Zea mays B104 HOM05M006267 ORTHO05M007363 5.8e-28 129.4 202 44.6
DexiUA01G0013480 Digitaria exilis HOM05M002722 ORTHO05M003073 3.7e-27 126.7 322 32.6
Asa0G05027 Allium sativum HOM05M002722 ORTHO05M003073 6.0e-25 119.4 170 39.4
Zm00007a00002581 Zea mays B104 HOM05M004123 ORTHO05M006741 6.0e-25 119.4 68 76.5
Zm00007a00047675 Zea mays B104 HOM05M004123 ORTHO05M006741 6.0e-25 119.4 68 76.5
Zm00001eb402660 Zea mays B73 HOM05M002722 ORTHO05M003073 2.4e-18 97.4 275 32.0
p5.00_sc00129_p0032 Elaeis guineensis HOM05M002722 ORTHO05M003073 2.1e-14 84.3 182 33.5
SEGI_23346 Sequoiadendron giganteum HOM05M002722 ORTHO05M003073 2.3e-13 80.9 116 41.4
Asa2G03320 Allium sativum HOM05M002722 ORTHO05M003073 4.4e-12 76.6 96 41.7
Sobic.005G157866 Sorghum bicolor HOM05M002722 ORTHO05M003073 4.9e-11 73.2 73 57.5
Misin11G109700 Miscanthus sinensis HOM05M002722 ORTHO05M003073 1.4e-10 71.6 84 51.2
DDU407G0734 Dioscorea dumetorum HOM05M002722 ORTHO05M003073 1.9e-10 71.2 113 40.7
Zjn_sc00002.1.g15360.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002722 ORTHO05M003073 7.1e-10 69.3 114 38.6
MBI04_g25313_MAGBIO Magnolia biondii HOM05M002119 ORTHO05M001600 3.3e-07 60.5 247 24.3
Zm00007a00031947 Zea mays B104 HOM05M004123 ORTHO05M006741 1.6e-06 58.2 73 46.6


User provided reference genes

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