Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EJB05_32018 Eragrostis curvula HOM05M002649 ORTHO05M002953 4.7e-123 443.7 218 100.0
EJB05_32017 Eragrostis curvula HOM05M002649 ORTHO05M002953 5.2e-106 387.1 224 83.9
PH02Gene45502 Phyllostachys edulis HOM05M002649 ORTHO05M002953 1.2e-102 375.9 213 85.0
Pahal.5G439600 Panicum hallii HOM05M002649 ORTHO05M002953 3.5e-102 374.4 214 84.6
PH02Gene18035 Phyllostachys edulis HOM05M002649 ORTHO05M002953 3.5e-102 374.4 213 84.5
Sevir.5G066500 Setaria viridis HOM05M002649 ORTHO05M002953 1.0e-101 372.9 214 83.2
Dexi5A01G0010350 Digitaria exilis HOM05M002649 ORTHO05M002953 1.3e-101 372.5 214 83.2
Dexi5B01G0010600 Digitaria exilis HOM05M002649 ORTHO05M002953 1.7e-101 372.1 212 83.5
Seita.5G068300 Setaria italica HOM05M002649 ORTHO05M002953 1.7e-101 372.1 214 83.6
Sevir.5G067200 Setaria viridis HOM05M002649 ORTHO05M002953 1.7e-101 372.1 214 83.6
Seita.5G067600 Setaria italica HOM05M002649 ORTHO05M002953 3.0e-101 371.3 214 83.2
Misin05G093000 Miscanthus sinensis HOM05M002649 ORTHO05M002953 3.9e-101 370.9 216 81.5
Dexi5A01G0010270 Digitaria exilis HOM05M002649 ORTHO05M002953 6.6e-101 370.2 212 83.0
Pahal.5G438700 Panicum hallii HOM05M002649 ORTHO05M002953 6.6e-101 370.2 214 82.7
GWHGAORA041747 Cenchrus purpureus HOM05M002649 ORTHO05M002953 1.5e-100 369.0 214 83.2
Ot_Chr3_gn34073 Oropetium thomaeum HOM05M002649 ORTHO05M002953 1.5e-100 369.0 214 83.2
GWHGAORA033224 Cenchrus purpureus HOM05M002649 ORTHO05M002953 3.3e-100 367.9 214 82.2
Sspon.03G0018170-2B Saccharum spontaneum HOM05M002649 ORTHO05M002953 3.3e-100 367.9 216 81.5
GWHGAORA041741 Cenchrus purpureus HOM05M002649 ORTHO05M002953 4.3e-100 367.5 214 83.2
Misin12G021800 Miscanthus sinensis HOM05M002649 ORTHO05M002953 5.6e-100 367.1 216 81.0
Sspon.03G0018170-1P Saccharum spontaneum HOM05M002649 ORTHO05M002953 5.6e-100 367.1 216 81.0
Sspon.03G0018170-3T Saccharum spontaneum HOM05M002649 ORTHO05M002953 5.6e-100 367.1 216 81.0
Sspon.03G0018170-1T Saccharum spontaneum HOM05M002649 ORTHO05M002953 2.8e-99 364.8 216 80.6
OsKitaake01g002700 Oryza sativa Kitaake HOM05M002649 ORTHO05M002953 8.1e-99 363.2 216 81.5
OsR498G0100014200.01 Oryza sativa ssp. indica HOM05M002649 ORTHO05M002953 8.1e-99 363.2 216 81.5
Os01g0103600 Oryza sativa ssp. japonica HOM05M002649 ORTHO05M002953 8.1e-99 363.2 216 81.5
Sspon.03G0018170-3C Saccharum spontaneum HOM05M002649 ORTHO05M002953 4.0e-98 360.9 216 81.0
V3.Lp_chr7_0.1G646 Lolium perenne HOM05M002649 ORTHO05M002953 5.2e-98 360.5 214 81.8
Sspon.03G0018160-3C Saccharum spontaneum HOM05M002649 ORTHO05M002953 6.8e-98 360.1 214 80.8
Sobic.003G107400 Sorghum bicolor HOM05M002649 ORTHO05M002953 6.8e-98 360.1 214 80.8
Sspon.03G0018150-1A Saccharum spontaneum HOM05M002649 ORTHO05M002953 8.9e-98 359.8 214 80.4
Zm00007a00039870 Zea mays B104 HOM05M002649 ORTHO05M002953 1.2e-97 359.4 214 80.4
V3.Lp_chr2_0G604 Lolium perenne HOM05M002649 ORTHO05M002953 5.8e-97 357.1 214 79.4
Sobic.003G107600 Sorghum bicolor HOM05M002649 ORTHO05M002953 7.6e-97 356.7 211 80.6
Zm00001eb334120 Zea mays B73 HOM05M002649 ORTHO05M002953 7.6e-97 356.7 211 81.5
Bradi2g03530 Brachypodium distachyon HOM05M002649 ORTHO05M002953 1.3e-96 355.9 214 80.4
OB11G21170 Oryza brachyantha HOM05M002649 ORTHO05M002953 6.4e-96 353.6 221 78.7
GWHGASIY013264 Secale cereale HOM05M002649 ORTHO05M002953 1.1e-95 352.8 214 79.4
TRITD3Bv1G026510 Triticum turgidum HOM05M002649 ORTHO05M002953 4.1e-95 350.9 214 79.0
AET3Gv20173900 Aegilops tauschii HOM05M002649 ORTHO05M002953 7.1e-95 350.1 214 79.0
Sspon.03G0018160-4D Saccharum spontaneum HOM05M002649 ORTHO05M002953 7.1e-95 350.1 229 75.1
TraesCS3D03G0156100 Triticum aestivum HOM05M002649 ORTHO05M002953 7.1e-95 350.1 214 79.0
TraesCS3A03G0174700 Triticum aestivum HOM05M002649 ORTHO05M002953 1.6e-94 349.0 214 78.5
TRIDC3AG009460 Triticum dicoccoides HOM05M002649 ORTHO05M002953 1.6e-94 349.0 214 78.5
TRITD3Av1G022680 Triticum turgidum HOM05M002649 ORTHO05M002953 1.6e-94 349.0 214 78.5
Misin05G093800 Miscanthus sinensis HOM05M002649 ORTHO05M002953 2.1e-94 348.6 214 80.8
Sspon.03G0018160-2B Saccharum spontaneum HOM05M002649 ORTHO05M002953 2.1e-94 348.6 229 75.1
TraesCS3B03G0219900 Triticum aestivum HOM05M002649 ORTHO05M002953 6.0e-94 347.1 214 78.5
TRIDC3BG013320 Triticum dicoccoides HOM05M002649 ORTHO05M002953 6.0e-94 347.1 214 78.5
GWHGAZTO052926 Oryza alta HOM05M002649 ORTHO05M002953 7.8e-94 346.7 241 72.2
Horvu_MOREX_3H01G086000 Hordeum vulgare HOM05M002649 ORTHO05M002953 1.5e-92 342.4 214 77.6
Sobic.003G106800 Sorghum bicolor HOM05M002649 ORTHO05M002953 2.5e-92 341.7 216 76.9
Dexi5B01G0010570 Digitaria exilis HOM05M002649 ORTHO05M002953 3.3e-92 341.3 220 74.1
Seita.5G068400 Setaria italica HOM05M002649 ORTHO05M002953 7.3e-92 340.1 219 73.5
Sevir.5G067300 Setaria viridis HOM05M002649 ORTHO05M002953 7.3e-92 340.1 219 73.5
Pahal.5G439700 Panicum hallii HOM05M002649 ORTHO05M002953 2.4e-90 335.1 219 74.0
V3.Lp_chr3_0G3046 Lolium perenne HOM05M002649 ORTHO05M002953 6.8e-90 333.6 201 80.6
GWHGAORA041740 Cenchrus purpureus HOM05M002649 ORTHO05M002953 1.3e-88 329.3 215 72.1
Misin05G092800 Miscanthus sinensis HOM05M002649 ORTHO05M002953 3.2e-87 324.7 220 70.0
V3.Lp_chr3_0G3106 Lolium perenne HOM05M002649 ORTHO05M002953 6.0e-86 320.5 214 72.4
Sobic.003G106300 Sorghum bicolor HOM05M002649 ORTHO05M002953 6.0e-86 320.5 220 69.1
Zm00001eb126960 Zea mays B73 HOM05M002649 ORTHO05M002953 1.7e-85 318.9 221 69.2
Dexi5A01G0010260 Digitaria exilis HOM05M002649 ORTHO05M002953 2.3e-85 318.5 231 68.8
Sobic.003G106400 Sorghum bicolor HOM05M002649 ORTHO05M002953 4.3e-84 314.3 221 67.4
Sspon.03G0035350-1B Saccharum spontaneum HOM05M002649 ORTHO05M002953 1.5e-81 305.8 220 67.3
CALSI_Maker00047301 Calamus simplicifolius HOM05M002649 ORTHO05M002953 1.7e-80 302.4 225 66.2
Aco019063 Ananas comosus HOM05M002649 ORTHO05M002953 4.9e-80 300.8 208 69.2
Zm00007a00009946 Zea mays B104 HOM05M002649 ORTHO05M002953 1.1e-79 299.7 221 66.5
p5.00_sc00177_p0013 Elaeis guineensis HOM05M002649 ORTHO05M002953 2.4e-79 298.5 208 68.8
Ma06_g07790 Musa acuminata HOM05M002649 ORTHO05M002953 4.2e-79 297.7 212 69.3
DDU049G0387 Dioscorea dumetorum HOM05M002649 ORTHO05M002953 7.9e-78 293.5 217 65.0
DDU828G0017 Dioscorea dumetorum HOM05M002649 ORTHO05M002953 7.9e-78 293.5 217 65.0
OB06G24600 Oryza brachyantha HOM05M002649 ORTHO05M002953 2.3e-77 292.0 213 66.7
Potri.003G160500 Populus trichocarpa HOM05M002649 ORTHO05M002953 3.9e-77 291.2 216 65.3
CALSI_Maker00002798 Calamus simplicifolius HOM05M002649 ORTHO05M002953 5.1e-77 290.8 229 63.8
CALSI_Maker00043760 Calamus simplicifolius HOM05M002649 ORTHO05M002953 5.1e-77 290.8 229 63.8
HPP92_007039 Vanilla planifolia HOM05M002649 ORTHO05M002953 1.5e-76 289.3 215 67.4
HPP92_007022 Vanilla planifolia HOM05M002649 ORTHO05M002953 4.3e-76 287.7 205 69.3
ATR0665G198 Amborella trichopoda HOM05M002649 ORTHO05M002953 1.3e-75 286.2 211 65.9
TRIDC5AG000900 Triticum dicoccoides HOM05M002649 ORTHO05M002953 5.8e-73 277.3 222 61.7
AET5Gv20019900 Aegilops tauschii HOM05M002649 ORTHO05M002953 7.6e-73 276.9 218 60.6
MBI07_g42009_MAGBIO Magnolia biondii HOM05M002649 ORTHO05M002953 9.9e-73 276.6 212 63.7
TraesCS5A03G0011500 Triticum aestivum HOM05M002649 ORTHO05M002953 2.2e-72 275.4 218 61.0
TraesCS5D03G0025600 Triticum aestivum HOM05M002649 ORTHO05M002953 8.4e-72 273.5 218 60.1
SEGI_00448 Sequoiadendron giganteum HOM05M002649 ORTHO05M002953 1.4e-71 272.7 211 61.6
Dexi5B01G0010580 Digitaria exilis HOM05M002649 ORTHO05M002953 1.9e-71 272.3 216 60.6
TraesCS5A03G0012100 Triticum aestivum HOM05M002649 ORTHO05M002953 1.9e-71 272.3 222 60.8
TRITD5Av1G001860 Triticum turgidum HOM05M002649 ORTHO05M002953 3.2e-71 271.6 218 61.0
TRITD5Bv1G001750 Triticum turgidum HOM05M002649 ORTHO05M002953 3.2e-71 271.6 218 60.1
TraesCS5B03G0071800 Triticum aestivum HOM05M002649 ORTHO05M002953 5.4e-71 270.8 220 60.9
TRITD5Bv1G001720 Triticum turgidum HOM05M002649 ORTHO05M002953 5.4e-71 270.8 210 62.9
TRITD5Bv1G008700 Triticum turgidum HOM05M002649 ORTHO05M002953 5.4e-71 270.8 210 63.8
TraesCS5B03G0060400 Triticum aestivum HOM05M002649 ORTHO05M002953 7.1e-71 270.4 210 63.8
TRIDC5BG004660 Triticum dicoccoides HOM05M002649 ORTHO05M002953 7.1e-71 270.4 220 60.9
Spipo7G0066900 Spirodela polyrhiza HOM05M002649 ORTHO05M002953 2.1e-70 268.9 210 63.8
TRITD5Bv1G011630 Triticum turgidum HOM05M002649 ORTHO05M002953 3.5e-70 268.1 220 60.5
TraesCS5B03G0060200 Triticum aestivum HOM05M002649 ORTHO05M002953 4.6e-70 267.7 210 62.9
Sobic.003G106600 Sorghum bicolor HOM05M002649 ORTHO05M002953 6.0e-70 267.3 156 81.4
GWHGASIY025870 Secale cereale HOM05M002649 ORTHO05M002953 7.9e-70 266.9 218 58.7
TraesCS5B03G0060100 Triticum aestivum HOM05M002649 ORTHO05M002953 7.9e-70 266.9 210 62.9
AET5Gv20020000 Aegilops tauschii HOM05M002649 ORTHO05M002953 1.0e-69 266.5 210 61.9
Solyc06g082980.3 Solanum lycopersicum HOM05M002649 ORTHO05M002953 1.0e-69 266.5 219 57.5
TraesCS5D03G0025700 Triticum aestivum HOM05M002649 ORTHO05M002953 1.0e-69 266.5 210 61.9
Zjn_sc00005.1.g08410.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002649 ORTHO05M002953 2.3e-69 265.4 214 63.6
Glyma.09G186700 Glycine max HOM05M002649 ORTHO05M002953 1.1e-68 263.1 203 62.6
AT1G20050 Arabidopsis thaliana HOM05M002649 ORTHO05M002953 4.3e-68 261.2 203 60.6
CDE04G3258 Ceratophyllum demersum HOM05M002649 ORTHO05M002953 5.3e-66 254.2 208 60.6
Zosma02g23020 Zostera marina HOM05M002649 ORTHO05M002953 5.3e-66 254.2 200 61.0
TraesCS7D03G0155200 Triticum aestivum HOM05M002649 ORTHO05M002953 1.7e-64 249.2 159 76.1
Asa5G01545 Allium sativum HOM05M002649 ORTHO05M002953 2.9e-64 248.4 235 56.6
Glyma.09G186900 Glycine max HOM05M002649 ORTHO05M002953 4.2e-63 244.6 206 56.8
Glyma.09G186800 Glycine max HOM05M002649 ORTHO05M002953 1.2e-62 243.0 206 59.7
GWHGASIY033871 Secale cereale HOM05M002649 ORTHO05M002953 5.1e-61 237.7 144 81.2
GWHGAORA033230 Cenchrus purpureus HOM05M002649 ORTHO05M002953 8.2e-59 230.3 129 86.0
Pp3c9_19720 Physcomitrium patens HOM05M002649 ORTHO05M002953 2.4e-58 228.8 211 57.8
Mapoly0026s0030 Marchantia polymorpha HOM05M002649 ORTHO05M002953 5.3e-58 227.6 210 54.8
MisinT109000 Miscanthus sinensis HOM05M002649 ORTHO05M002953 1.2e-57 226.5 149 75.2
EJB05_32030 Eragrostis curvula HOM05M002649 ORTHO05M002953 3.2e-55 218.4 134 78.4
EJB05_56542 Eragrostis curvula HOM05M002649 ORTHO05M002953 3.2e-55 218.4 134 78.4
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05M002649 ORTHO05M002953 3.5e-54 214.9 213 48.4
Glyma.13G078900 Glycine max HOM05M002649 ORTHO05M002953 1.0e-53 213.4 160 63.8
SMO119G0501 Selaginella moellendorffii HOM05M002649 ORTHO05M002953 1.1e-52 209.9 207 53.1
SMO196G0274 Selaginella moellendorffii HOM05M002649 ORTHO05M002953 2.4e-50 202.2 202 51.5
Aco030372 Ananas comosus HOM05M002649 ORTHO05M002953 4.5e-41 171.4 127 63.8
Asa6G02384 Allium sativum HOM05M002649 ORTHO05M002953 1.4e-39 166.4 127 63.0
SEGI_03556 Sequoiadendron giganteum HOM05M002649 ORTHO05M002953 2.5e-39 165.6 157 55.4
Cre12.g557900 Chlamydomonas reinhardtii HOM05M002649 ORTHO05M002953 7.2e-39 164.1 208 41.8
Sspon.03G0018160-1A Saccharum spontaneum HOM05M000002 ORTHO05M000002 6.1e-38 161.0 91 78.0
OsR498G0612637600.01 Oryza sativa ssp. indica HOM05M002649 ORTHO05M002953 3.0e-37 158.7 109 72.5
Mapoly0072s0066 Marchantia polymorpha HOM05M002649 ORTHO05M002953 3.9e-37 158.3 202 43.1
GWHGAORA033231 Cenchrus purpureus HOM05M002649 ORTHO05M002953 1.1e-36 156.8 104 67.3
Ot_Chr9_g20387 Oropetium thomaeum HOM05M002649 ORTHO05M002953 8.2e-35 150.6 86 80.2
evm.TU.AsparagusV1_02.1372.V1.1 Asparagus officinalis HOM05M002649 ORTHO05M002953 1.7e-32 142.9 101 69.3
Potri.001G070301 Populus trichocarpa HOM05M002649 ORTHO05M002953 3.1e-26 122.1 101 58.4
CBR_g55168 Chara braunii HOM05M002649 ORTHO05M002953 1.2e-25 120.2 127 44.9
evm.TU.AsparagusV1_09.1532.V1.1 Asparagus officinalis HOM05M002649 ORTHO05M002953 2.7e-25 119.0 85 67.1
GWHGAZTO087766 Oryza alta HOM05M002649 ORTHO05M002953 5.5e-23 111.3 78 69.2
OsKitaake06g171103 Oryza sativa Kitaake HOM05M002649 ORTHO05M002953 2.3e-21 105.9 67 83.6
TRIDC4AG061850 Triticum dicoccoides HOM05M002649 ORTHO05M002953 3.4e-20 102.1 64 68.8
TRIDC7AG008130 Triticum dicoccoides HOM05M002649 ORTHO05M002953 2.2e-11 72.8 40 87.5
Zm00007a00009117 Zea mays B104 HOM05M002649 ORTHO05M277682 5.0e-08 61.6 49 65.3


User provided reference genes

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