Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EJB05_27910 Eragrostis curvula HOM05M006634 ORTHO05M008225 2.7e-219 764.2 379 100.0
Sobic.005G116300 Sorghum bicolor HOM05M006634 ORTHO05M008225 1.5e-188 662.1 388 87.1
Misin10G092300 Miscanthus sinensis HOM05M006634 ORTHO05M008225 1.1e-183 646.0 392 84.9
Pahal.8G171200 Panicum hallii HOM05M006634 ORTHO05M008225 1.4e-183 645.6 398 84.4
Sspon.06G0014240-3D Saccharum spontaneum HOM05M006634 ORTHO05M008225 1.6e-182 642.1 389 86.4
Dexi8A01G0010140 Digitaria exilis HOM05M006634 ORTHO05M008225 7.3e-180 633.3 396 82.3
Sspon.06G0014240-2B Saccharum spontaneum HOM05M006634 ORTHO05M008225 1.2e-179 632.5 385 86.0
Zjn_sc00054.1.g00870.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M006634 ORTHO05M008225 3.1e-178 627.9 386 84.7
Dexi8B01G0009080 Digitaria exilis HOM05M006634 ORTHO05M008225 8.9e-178 626.3 397 81.4
Misin09G123500 Miscanthus sinensis HOM05M006634 ORTHO05M008225 7.0e-175 616.7 387 83.5
Zm00001eb169510 Zea mays B73 HOM05M006634 ORTHO05M008225 2.0e-174 615.1 387 80.9
Sspon.06G0014240-1A Saccharum spontaneum HOM05M006634 ORTHO05M008225 7.8e-174 613.2 382 84.8
Zm00007a00031756 Zea mays B104 HOM05M006634 ORTHO05M008225 3.9e-173 610.9 389 81.0
GWHGAORA011738 Cenchrus purpureus HOM05M006634 ORTHO05M008225 2.2e-168 595.1 392 78.8
GWHGAORA043505 Cenchrus purpureus HOM05M006634 ORTHO05M008225 3.7e-168 594.3 389 78.1
PH02Gene31207 Phyllostachys edulis HOM05M006634 ORTHO05M008225 1.5e-164 582.4 387 79.1
PH02Gene41452 Phyllostachys edulis HOM05M006634 ORTHO05M008225 1.6e-163 578.9 387 78.3
GWHGASIY014310 Secale cereale HOM05M006634 ORTHO05M008225 1.1e-162 576.2 388 77.1
TraesCS3A03G0309700 Triticum aestivum HOM05M006634 ORTHO05M008225 1.1e-162 576.2 388 77.3
TRITD3Av1G051120 Triticum turgidum HOM05M006634 ORTHO05M008225 1.1e-162 576.2 388 77.3
Zjn_sc00145.1.g00130.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M006634 ORTHO05M008225 2.3e-162 575.1 384 78.6
Horvu_MOREX_3H01G169300 Hordeum vulgare HOM05M006634 ORTHO05M008225 6.8e-162 573.5 389 76.6
AET3Gv20298500 Aegilops tauschii HOM05M006634 ORTHO05M008225 3.4e-161 571.2 389 76.3
TraesCS3B03G0373300 Triticum aestivum HOM05M006634 ORTHO05M008225 3.4e-161 571.2 388 76.5
TraesCS3D03G0291900 Triticum aestivum HOM05M006634 ORTHO05M008225 3.4e-161 571.2 389 76.3
TRITD3Bv1G057310 Triticum turgidum HOM05M006634 ORTHO05M008225 3.4e-161 571.2 388 76.5
Seita.8G122300 Setaria italica HOM05M006634 ORTHO05M008225 7.6e-161 570.1 390 76.9
Sevir.8G129100 Setaria viridis HOM05M006634 ORTHO05M008225 7.6e-161 570.1 390 76.9
V3.Lp_chr7_0.1G10084 Lolium perenne HOM05M006634 ORTHO05M008225 9.2e-159 563.1 385 76.9
Bradi4g19020 Brachypodium distachyon HOM05M006634 ORTHO05M008225 2.7e-158 561.6 379 77.0
GWHGASIY014315 Secale cereale HOM05M006634 ORTHO05M008225 3.0e-157 558.1 399 74.2
TRIDC3BG022190 Triticum dicoccoides HOM05M006634 ORTHO05M008225 6.2e-155 550.4 372 77.2
Aco003678 Ananas comosus HOM05M006634 ORTHO05M008225 1.0e-133 479.9 373 69.4
GWHGAZTO012009 Oryza alta HOM05M006634 ORTHO05M008225 1.4e-130 469.5 406 64.3
Ma03_g17530 Musa acuminata HOM05M006634 ORTHO05M008225 5.3e-130 467.6 365 68.5
TRIDC3AG017480 Triticum dicoccoides HOM05M006634 ORTHO05M008225 7.6e-129 463.8 289 81.3
OsKitaake11g136300 Oryza sativa Kitaake HOM05M006634 ORTHO05M008225 4.9e-128 461.1 387 65.6
Os11g0487100 Oryza sativa ssp. japonica HOM05M006634 ORTHO05M008225 4.9e-128 461.1 387 65.6
CALSI_Maker00014884 Calamus simplicifolius HOM05M006634 ORTHO05M008225 4.2e-127 458.0 373 65.4
HPP92_023388 Vanilla planifolia HOM05M006634 ORTHO05M008225 7.1e-127 457.2 359 66.0
p5.00_sc00152_p0001 Elaeis guineensis HOM05M006634 ORTHO05M008225 1.0e-125 453.4 376 64.9
GWHGAZTO064053 Oryza alta HOM05M006634 ORTHO05M008225 1.3e-125 453.0 394 63.7
OB11G20960 Oryza brachyantha HOM05M006634 ORTHO05M008225 2.3e-125 452.2 393 63.6
Asa5G01698 Allium sativum HOM05M006634 ORTHO05M008225 1.1e-122 443.4 373 62.5
evm.TU.AsparagusV1_02.1080.V1.1 Asparagus officinalis HOM05M006634 ORTHO05M008225 1.4e-122 443.0 347 67.4
DDU738G0049 Dioscorea dumetorum HOM05M006634 ORTHO05M008225 4.6e-118 427.9 342 67.0
MBI07_g21932_MAGBIO Magnolia biondii HOM05M006634 ORTHO05M008225 2.3e-117 425.6 375 61.9
HPP92_009720 Vanilla planifolia HOM05M006634 ORTHO05M008225 1.0e-112 410.2 327 67.0
Solyc05g015480.3 Solanum lycopersicum HOM05M006634 ORTHO05M008225 1.8e-106 389.4 351 60.1
ATR0561G262 Amborella trichopoda HOM05M006634 ORTHO05M008225 2.4e-106 389.0 351 60.1
Potri.012G098200 Populus trichocarpa HOM05M006634 ORTHO05M008225 4.7e-102 374.8 348 59.5
Potri.015G097000 Populus trichocarpa HOM05M006634 ORTHO05M008225 3.0e-101 372.1 345 59.4
Potri.003G172100 Populus trichocarpa HOM05M006634 ORTHO05M008225 7.4e-100 367.5 346 56.9
DDU537G0016 Dioscorea dumetorum HOM05M006634 ORTHO05M008225 2.9e-96 355.5 305 63.9
Glyma.05G048700 Glycine max HOM05M006634 ORTHO05M008225 4.0e-93 345.1 347 56.2
Glyma.06G169800 Glycine max HOM05M006634 ORTHO05M008225 2.8e-91 339.0 342 56.1
Glyma.04G196000 Glycine max HOM05M006634 ORTHO05M008225 5.9e-89 331.3 342 55.3
CALSI_Maker00027677 Calamus simplicifolius HOM05M006634 ORTHO05M008225 1.7e-83 313.2 267 60.7
AagrBONN_evm.TU.Sc2ySwM_368.1934 Anthoceros agrestis HOM05M006634 ORTHO05M008225 7.7e-81 304.3 337 51.3
SMO137G0388 Selaginella moellendorffii HOM05M006634 ORTHO05M008225 5.7e-76 288.1 329 50.5
Zjn_sc00054.1.g00860.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M006634 ORTHO05M008225 4.4e-68 261.9 162 83.3
CALSI_Maker00028630 Calamus simplicifolius HOM05M006634 ORTHO05M008225 2.8e-62 242.7 202 61.4
CALSI_Maker00038593 Calamus simplicifolius HOM05M006634 ORTHO05M008225 6.2e-62 241.5 231 57.1
p5.00_sc00229_p0005 Elaeis guineensis HOM05M006634 ORTHO05M008225 4.9e-59 231.9 229 54.6
p5.00_sc19408_p0001 Elaeis guineensis HOM05M006634 ORTHO05M008225 4.7e-54 215.3 172 61.0
Potri.001G056400 Populus trichocarpa HOM05M006634 ORTHO05M008225 1.9e-42 176.8 147 60.5
CBR_g28759 Chara braunii HOM05M006634 ORTHO05M008225 1.7e-35 153.7 203 40.9
CBR_g48472 Chara braunii HOM05M006634 ORTHO05M008225 2.4e-34 149.8 204 42.2
Glyma.17G130600 Glycine max HOM05M006634 ORTHO05M008225 3.5e-25 119.4 228 36.0
Mapoly0093s0023 Marchantia polymorpha HOM05M001445 ORTHO05M003012 8.4e-19 98.2 168 34.5
Pp3c17_16090 Physcomitrium patens HOM05M001445 ORTHO05M003012 8.4e-19 98.2 165 34.5
p5.00_sc00016_p0090 Elaeis guineensis HOM05M001445 ORTHO05M006639 7.1e-18 95.1 168 33.9
Pp3c2_5910 Physcomitrium patens HOM05M001445 ORTHO05M003012 7.1e-18 95.1 169 32.5
Glyma.10G239900 Glycine max HOM05M001445 ORTHO05M006639 1.2e-17 94.4 300 28.0
Potri.001G111600 Populus trichocarpa HOM05M001445 ORTHO05M006639 1.2e-17 94.4 206 30.6
Potri.003G120500 Populus trichocarpa HOM05M001445 ORTHO05M006639 1.6e-17 94.0 283 29.7
Pp3c1_42570 Physcomitrium patens HOM05M001445 ORTHO05M003012 2.7e-17 93.2 169 32.0
Glyma.20G154700 Glycine max HOM05M001445 ORTHO05M006639 3.5e-17 92.8 203 29.1
AagrBONN_evm.TU.Sc2ySwM_344.4120 Anthoceros agrestis HOM05M001445 ORTHO05M003012 4.6e-17 92.4 164 33.5
Ma01_g03310 Musa acuminata HOM05M001445 ORTHO05M006639 4.6e-17 92.4 175 32.0
Zosma05g32000 Zostera marina HOM05M001445 ORTHO05M006639 1.0e-16 91.3 171 32.2
CALSI_Maker00023341 Calamus simplicifolius HOM05M001445 ORTHO05M006639 1.3e-16 90.9 168 29.8
p5.00_sc00479_p0001 Elaeis guineensis HOM05M001445 ORTHO05M006639 1.3e-16 90.9 220 30.9
SEGI_24385 Sequoiadendron giganteum HOM05M001445 ORTHO05M003012 1.3e-16 90.9 169 33.7
Ma05_g01670 Musa acuminata HOM05M001445 ORTHO05M003012 3.9e-16 89.4 184 30.4
ATR0757G091 Amborella trichopoda HOM05M001445 ORTHO05M006639 5.1e-16 89.0 170 30.6
Potri.015G137900 Populus trichocarpa HOM05M001445 ORTHO05M006639 5.1e-16 89.0 170 30.6
Solyc08g080180.1 Solanum lycopersicum HOM05M001445 ORTHO05M006639 5.1e-16 89.0 171 29.8
Ma02_g15210 Musa acuminata HOM05M001445 ORTHO05M003012 6.7e-16 88.6 185 30.3
Ma02_g05190 Musa acuminata HOM05M001445 ORTHO05M006639 1.5e-15 87.4 169 33.1
SEGI_24430 Sequoiadendron giganteum HOM05M001445 ORTHO05M003012 1.9e-15 87.0 184 29.9
evm.TU.AsparagusV1_07.3070.V1.1 Asparagus officinalis HOM05M001445 ORTHO05M003012 2.5e-15 86.7 190 28.9
p5.00_sc00844_p0004 Elaeis guineensis HOM05M001445 ORTHO05M003012 2.5e-15 86.7 184 28.8
Solyc03g031420.1 Solanum lycopersicum HOM05M001445 ORTHO05M006639 3.3e-15 86.3 307 27.0
DDU565G0028 Dioscorea dumetorum HOM05M001445 ORTHO05M003012 4.3e-15 85.9 170 31.2
DDU766G0018 Dioscorea dumetorum HOM05M001445 ORTHO05M003012 4.3e-15 85.9 170 31.2
Ma04_g38970 Musa acuminata HOM05M001445 ORTHO05M003012 4.3e-15 85.9 184 29.9
Zosma06g01560 Zostera marina HOM05M001445 ORTHO05M003012 4.3e-15 85.9 185 29.2
CALSI_Maker00035875 Calamus simplicifolius HOM05M001445 ORTHO05M003012 5.6e-15 85.5 169 30.8
DDU367G0011 Dioscorea dumetorum HOM05M001445 ORTHO05M006639 5.6e-15 85.5 168 31.0
DDU681G0032 Dioscorea dumetorum HOM05M001445 ORTHO05M006639 5.6e-15 85.5 168 31.0
Zosma03g02930 Zostera marina HOM05M001445 ORTHO05M003012 5.6e-15 85.5 204 29.9
p5.00_sc00030_p0016 Elaeis guineensis HOM05M001445 ORTHO05M003012 7.4e-15 85.1 184 28.8
AT4G37100 Arabidopsis thaliana HOM05M001445 ORTHO05M003012 9.6e-15 84.7 184 29.3
evm.TU.AsparagusV1_03.2282.V1.1 Asparagus officinalis HOM05M001445 ORTHO05M003012 9.6e-15 84.7 184 28.8
MBI04_g28570_MAGBIO Magnolia biondii HOM05M001445 ORTHO05M006639 9.6e-15 84.7 168 31.0
Aco024749 Ananas comosus HOM05M001445 ORTHO05M006639 1.3e-14 84.3 168 30.4
Aco008568 Ananas comosus HOM05M001445 ORTHO05M003012 1.6e-14 84.0 184 28.8
CDE02G1213 Ceratophyllum demersum HOM05M001445 ORTHO05M003012 1.6e-14 84.0 169 30.2
CDE04G1378 Ceratophyllum demersum HOM05M001445 ORTHO05M003012 2.1e-14 83.6 169 29.6
DDU389G0102 Dioscorea dumetorum HOM05M001445 ORTHO05M003012 2.1e-14 83.6 185 29.7
DDU693G0688 Dioscorea dumetorum HOM05M001445 ORTHO05M003012 2.1e-14 83.6 185 29.7
Asa4G04839 Allium sativum HOM05M001445 ORTHO05M003012 2.8e-14 83.2 183 27.3
Glyma.16G200100 Glycine max HOM05M001445 ORTHO05M006639 2.8e-14 83.2 274 29.2
ATR0733G228 Amborella trichopoda HOM05M001445 ORTHO05M003012 3.7e-14 82.8 185 28.6
GWHGAORA037214 Cenchrus purpureus HOM05M001445 ORTHO05M006639 3.7e-14 82.8 162 31.5
Glyma.16G144800 Glycine max HOM05M001445 ORTHO05M003012 3.7e-14 82.8 184 28.8
HPP92_019637 Vanilla planifolia HOM05M001445 ORTHO05M003012 3.7e-14 82.8 184 27.7
CDE04G1321 Ceratophyllum demersum HOM05M001445 ORTHO05M003012 4.8e-14 82.4 169 30.2
CDE07G1439 Ceratophyllum demersum HOM05M001445 ORTHO05M003012 4.8e-14 82.4 201 29.9
Misin07G253000 Miscanthus sinensis HOM05M001445 ORTHO05M006639 4.8e-14 82.4 211 28.0
Ma09_g00910 Musa acuminata HOM05M001445 ORTHO05M006639 4.8e-14 82.4 168 31.0
Pp3c16_25880 Physcomitrium patens HOM05M001445 ORTHO05M003012 4.8e-14 82.4 194 30.4
MisinT197000 Miscanthus sinensis HOM05M001445 ORTHO05M006639 6.2e-14 82.0 162 30.9
PH02Gene16159 Phyllostachys edulis HOM05M001445 ORTHO05M006639 8.2e-14 81.6 164 31.1
Pp3c25_10130 Physcomitrium patens HOM05M001445 ORTHO05M013014 8.2e-14 81.6 195 31.8
Solyc02g090190.1 Solanum lycopersicum HOM05M001445 ORTHO05M003012 8.2e-14 81.6 169 30.2
GWHGAORA012292 Cenchrus purpureus HOM05M001445 ORTHO05M006639 1.1e-13 81.3 162 30.9
Glyma.02G062500 Glycine max HOM05M001445 ORTHO05M003012 1.1e-13 81.3 169 30.2
Glyma.09G148400 Glycine max HOM05M001445 ORTHO05M006639 1.1e-13 81.3 170 29.4
Sspon.06G0003700-1P Saccharum spontaneum HOM05M001445 ORTHO05M006639 1.1e-13 81.3 162 30.9
Sspon.06G0003700-2B Saccharum spontaneum HOM05M001445 ORTHO05M006639 1.1e-13 81.3 162 30.9
Spipo3G0112300 Spirodela polyrhiza HOM05M001445 ORTHO05M003012 1.1e-13 81.3 211 28.0
CDE02G0520 Ceratophyllum demersum HOM05M001445 ORTHO05M003012 1.4e-13 80.9 168 28.6
AT5G51920 Arabidopsis thaliana HOM05M001445 ORTHO05M006639 1.8e-13 80.5 171 28.1
Sobic.007G181900 Sorghum bicolor HOM05M001445 ORTHO05M006639 1.8e-13 80.5 167 30.5
Pahal.6G291400 Panicum hallii HOM05M001445 ORTHO05M006639 2.4e-13 80.1 162 30.2
Pp3c12_9330 Physcomitrium patens HOM05M001445 ORTHO05M013014 3.1e-13 79.7 158 32.9
GWHGAZTO049620 Oryza alta HOM05M001445 ORTHO05M006639 4.0e-13 79.3 165 32.1
Zm00001eb198540 Zea mays B73 HOM05M001445 ORTHO05M006639 4.0e-13 79.3 295 24.7
AT5G66950 Arabidopsis thaliana HOM05M001445 ORTHO05M003012 5.3e-13 79.0 163 30.7
HPP92_018733 Vanilla planifolia HOM05M001445 ORTHO05M003012 5.3e-13 79.0 184 27.2
Pahal.9G074600 Panicum hallii HOM05M001445 ORTHO05M003012 6.9e-13 78.6 200 28.5
Zm00001eb037500 Zea mays B73 HOM05M001445 ORTHO05M006639 6.9e-13 78.6 260 25.8
Zm00007a00046194 Zea mays B104 HOM05M001445 ORTHO05M006639 6.9e-13 78.6 295 24.7
Seita.6G234900 Setaria italica HOM05M001445 ORTHO05M006639 1.2e-12 77.8 162 30.2
Sevir.6G241200 Setaria viridis HOM05M001445 ORTHO05M006639 1.2e-12 77.8 162 30.2
Zm00007a00040966 Zea mays B104 HOM05M001445 ORTHO05M006639 1.2e-12 77.8 260 25.8
GWHGAZTO096204 Oryza alta HOM05M001445 ORTHO05M006639 1.5e-12 77.4 165 32.1
SMO358G0393 Selaginella moellendorffii HOM05M001445 ORTHO05M003012 1.5e-12 77.4 169 30.8
Asa7G01950 Allium sativum HOM05M001445 ORTHO05M006639 2.0e-12 77.0 171 26.3
evm.TU.AsparagusV1_10.1209.V1.1 Asparagus officinalis HOM05M001445 ORTHO05M006639 2.0e-12 77.0 168 27.4
OsKitaake08g237000 Oryza sativa Kitaake HOM05M001445 ORTHO05M006639 1.0e-11 74.7 167 31.1
Os08g0545000 Oryza sativa ssp. japonica HOM05M001445 ORTHO05M006639 1.0e-11 74.7 167 31.1
Zjn_sc00015.1.g07170.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M001445 ORTHO05M006639 1.0e-11 74.7 197 29.4
Glyma.11G026900 Glycine max HOM05M001445 ORTHO05M006639 1.7e-11 73.9 168 28.6
Horvu_MOREX_7H01G343300 Hordeum vulgare HOM05M001445 ORTHO05M006639 2.9e-11 73.2 165 29.7
V3.Lp_chr7_0.1G4290 Lolium perenne HOM05M001445 ORTHO05M006639 2.9e-11 73.2 171 28.1
TraesCS7A03G0626200 Triticum aestivum HOM05M001445 ORTHO05M006639 2.9e-11 73.2 165 29.7
TraesCS7B03G0451700 Triticum aestivum HOM05M001445 ORTHO05M006639 2.9e-11 73.2 165 29.7
TraesCS7D03G0609100 Triticum aestivum HOM05M001445 ORTHO05M006639 2.9e-11 73.2 165 29.7
TRIDC7AG035230 Triticum dicoccoides HOM05M001445 ORTHO05M006639 2.9e-11 73.2 165 29.7
TRIDC7BG026440 Triticum dicoccoides HOM05M001445 ORTHO05M006639 2.9e-11 73.2 165 29.7
TRITD7Av1G110840 Triticum turgidum HOM05M001445 ORTHO05M006639 2.9e-11 73.2 165 29.7
TRITD7Bv1G082460 Triticum turgidum HOM05M001445 ORTHO05M006639 2.9e-11 73.2 165 29.7
Glyma.01G215600 Glycine max HOM05M001445 ORTHO05M006639 3.8e-11 72.8 168 29.2
Zjn_sc00078.1.g02420.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M001445 ORTHO05M006639 3.8e-11 72.8 163 30.1
AET7Gv20659100 Aegilops tauschii HOM05M001445 ORTHO05M006639 6.5e-11 72.0 165 29.7
GWHGASIY039064 Secale cereale HOM05M001445 ORTHO05M006639 8.4e-11 71.6 165 29.1
AagrBONN_evm.TU.Sc2ySwM_368.1038 Anthoceros agrestis HOM05M001445 ORTHO05M003012 1.1e-10 71.2 205 24.9
EJB05_47842 Eragrostis curvula HOM05M001445 ORTHO05M006639 1.9e-10 70.5 241 25.3
ATR0787G048 Amborella trichopoda HOM05M001445 ORTHO05M006639 4.2e-10 69.3 177 25.4
CDE04G2224 Ceratophyllum demersum HOM05M001445 ORTHO05M003012 4.2e-10 69.3 151 29.1
Bradi3g42000 Brachypodium distachyon HOM05M001445 ORTHO05M006639 5.5e-10 68.9 168 28.6
Pp3c16_23490 Physcomitrium patens HOM05M001445 ORTHO05M013014 5.5e-10 68.9 211 28.4
CDE04G1929 Ceratophyllum demersum HOM05M001445 ORTHO05M003012 9.7e-07 58.2 121 33.1
CALSI_Maker00042453 Calamus simplicifolius HOM05M001445 ORTHO05M006639 1.3e-06 57.8 97 36.1
CDE06G0002 Ceratophyllum demersum HOM05M001445 ORTHO05M003012 4.8e-06 55.8 81 39.5


User provided reference genes

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