Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EJB05_00907 Eragrostis curvula HOM05M000747 ORTHO05M012441 4.8e-171 603.6 297 100.0
EJB05_00917 Eragrostis curvula HOM05M000747 ORTHO05M007676 3.0e-32 142.5 457 30.6
EJB05_00918 Eragrostis curvula HOM05M000747 ORTHO05M007676 1.8e-16 90.1 81 60.5
GWHGAZTO082791 Oryza alta HOM05M000747 ORTHO05M012441 1.6e-12 77.0 83 48.2
EJB05_00923 Eragrostis curvula HOM05M000747 ORTHO05M012441 2.1e-12 76.6 53 73.6
EJB05_00932 Eragrostis curvula HOM05M008033 ORTHO05M007676 1.7e-11 73.6 39 89.7
PH02Gene11812 Phyllostachys edulis HOM05M000747 ORTHO05M012441 1.5e-10 70.5 77 46.8
GWHGAZTO096908 Oryza alta HOM05M008033 ORTHO05M007676 1.9e-10 70.1 79 54.4
Seita.3G385500 Setaria italica HOM05M000241 ORTHO05M000221 1.2e-09 67.4 100 39.0
p5.00_sc00017_p0227 Elaeis guineensis HOM05M000747 ORTHO05M001208 2.1e-09 66.6 70 45.7
Ot_Chr10_g18227 Oropetium thomaeum HOM05M000241 ORTHO05M000221 3.6e-09 65.9 88 46.6
DDU550G0149 Dioscorea dumetorum HOM05M000747 ORTHO05M001208 8.1e-09 64.7 90 38.9
TraesCS3D03G0787900 Triticum aestivum HOM05M000747 ORTHO05M001208 8.1e-09 64.7 93 36.6
CALSI_Maker00006158 Calamus simplicifolius HOM05M000747 ORTHO05M004751 1.4e-08 63.9 80 45.0
evm.TU.AsparagusV1_10.1574.V1.1 Asparagus officinalis HOM05M000747 ORTHO05M001208 1.8e-08 63.5 75 44.0
Potri.008G004300 Populus trichocarpa HOM05M000747 ORTHO05M004751 1.8e-08 63.5 80 43.8
PH02Gene23787 Phyllostachys edulis HOM05M008033 ORTHO05M007676 3.1e-08 62.8 82 41.5
Misin07G240100 Miscanthus sinensis HOM05M000747 ORTHO05M004751 1.2e-07 60.8 80 42.5
Sspon.02G0030940-1A Saccharum spontaneum HOM05M000241 ORTHO05M000221 1.2e-07 60.8 84 40.5
Sspon.02G0030940-1P Saccharum spontaneum HOM05M000241 ORTHO05M000221 1.2e-07 60.8 84 40.5
Sspon.02G0031050-2C Saccharum spontaneum HOM05M000241 ORTHO05M000221 1.2e-07 60.8 84 40.5
PH02Gene07078 Phyllostachys edulis HOM05M000747 ORTHO05M004751 1.5e-07 60.5 80 42.5
Sspon.02G0031050-1A Saccharum spontaneum HOM05M000241 ORTHO05M000221 1.5e-07 60.5 97 38.1
Ot_Chr2_g16094 Oropetium thomaeum HOM05M008033 ORTHO05M007676 2.0e-07 60.1 82 41.5
OsKitaake09g026000 Oryza sativa Kitaake HOM05M008033 ORTHO05M007676 2.0e-07 60.1 79 48.1
Aco000502 Ananas comosus HOM05M000747 ORTHO05M007676 2.6e-07 59.7 75 42.7
Aco026736 Ananas comosus HOM05M000747 ORTHO05M007676 2.6e-07 59.7 75 42.7
Misin15G134400 Miscanthus sinensis HOM05M000241 ORTHO05M000221 2.6e-07 59.7 84 38.1
Ma05_g31400 Musa acuminata HOM05M000747 ORTHO05M001208 2.6e-07 59.7 82 39.0
GWHGAZTO049351 Oryza alta HOM05M000747 ORTHO05M004751 2.6e-07 59.7 80 42.5
GWHGAZTO095972 Oryza alta HOM05M000747 ORTHO05M004751 2.6e-07 59.7 80 42.5
OsKitaake08g215300 Oryza sativa Kitaake HOM05M000747 ORTHO05M004751 2.6e-07 59.7 80 42.5
OsR498G0816477900.01 Oryza sativa ssp. indica HOM05M000747 ORTHO05M004751 2.6e-07 59.7 80 42.5
Os08g0519800 Oryza sativa ssp. japonica HOM05M000747 ORTHO05M004751 2.6e-07 59.7 80 42.5
CDE02G3367 Ceratophyllum demersum HOM05M000747 ORTHO05M001208 3.4e-07 59.3 41 63.4
Zm00001eb174630 Zea mays B73 HOM05M000747 ORTHO05M004751 4.4e-07 58.9 80 41.2
Zm00007a00001479 Zea mays B104 HOM05M000747 ORTHO05M004751 4.4e-07 58.9 80 41.2
Zosma02g00440 Zostera marina HOM05M000747 ORTHO05M001208 4.4e-07 58.9 37 67.6
AET7Gv20619600 Aegilops tauschii HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
Horvu_MOREX_7H01G314900 Hordeum vulgare HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
PH02Gene16001 Phyllostachys edulis HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
GWHGASIY020154 Secale cereale HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
GWHGASIY020157 Secale cereale HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
TraesCS7A03G0580000 Triticum aestivum HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
TraesCS7B03G0375700 Triticum aestivum HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
TraesCS7D03G0563600 Triticum aestivum HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
TRITD7Av1G096840 Triticum turgidum HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
TRITD7Bv1G064040 Triticum turgidum HOM05M000747 ORTHO05M004751 5.8e-07 58.5 80 41.2
Dexi6B01G0017260 Digitaria exilis HOM05M000747 ORTHO05M004751 7.6e-07 58.2 80 41.2
Misin13G175200 Miscanthus sinensis HOM05M000747 ORTHO05M004751 7.6e-07 58.2 80 41.2
Ma03_g13490 Musa acuminata HOM05M000747 ORTHO05M004751 7.6e-07 58.2 78 42.3
Sspon.06G0002200-1A Saccharum spontaneum HOM05M000747 ORTHO05M004751 7.6e-07 58.2 80 41.2
Sspon.06G0002200-4D Saccharum spontaneum HOM05M000747 ORTHO05M004751 7.6e-07 58.2 80 41.2
ATR0626G013 Amborella trichopoda HOM05M000747 ORTHO05M004751 9.9e-07 57.8 79 41.8
Bradi3g40520 Brachypodium distachyon HOM05M000747 ORTHO05M004751 9.9e-07 57.8 80 40.0
MBI05_g29681_MAGBIO Magnolia biondii HOM05M000747 ORTHO05M001208 9.9e-07 57.8 101 33.7
Misin14G119500 Miscanthus sinensis HOM05M000241 ORTHO05M000221 9.9e-07 57.8 84 36.9
GWHGAORA012018 Cenchrus purpureus HOM05M000747 ORTHO05M004751 1.3e-06 57.4 80 41.2
Pahal.6G194200 Panicum hallii HOM05M000241 ORTHO05M000221 1.3e-06 57.4 80 41.2
Sobic.007G202600 Sorghum bicolor HOM05M000747 ORTHO05M004751 1.7e-06 57.0 80 40.0
Sobic.002G049800 Sorghum bicolor HOM05M008033 ORTHO05M007676 2.2e-06 56.6 82 39.0
Zm00007a00032889 Zea mays B104 HOM05M008033 ORTHO05M007676 2.2e-06 56.6 92 37.0
OB12G23470 Oryza brachyantha HOM05M010761 ORTHO05M012441 2.9e-06 56.2 37 64.9
Pahal.6G267800 Panicum hallii HOM05M000747 ORTHO05M004751 2.9e-06 56.2 79 40.5
Seita.6G212700 Setaria italica HOM05M000747 ORTHO05M004751 2.9e-06 56.2 79 40.5
Sevir.6G219900 Setaria viridis HOM05M000747 ORTHO05M004751 2.9e-06 56.2 79 40.5
Zm00007a00015409 Zea mays B104 HOM05M000747 ORTHO05M001208 2.9e-06 56.2 41 56.1
Zosma05g26190 Zostera marina HOM05M000747 ORTHO05M009614 2.9e-06 56.2 79 40.5
Horvu_MOREX_2H01G614400 Hordeum vulgare HOM05M008033 ORTHO05M007676 3.8e-06 55.8 81 38.3
MisinT573800 Miscanthus sinensis HOM05M000241 ORTHO05M000221 3.8e-06 55.8 84 38.1
Sspon.02G0028500-1A Saccharum spontaneum HOM05M000241 ORTHO05M000221 3.8e-06 55.8 84 36.9
GWHGAORA036968 Cenchrus purpureus HOM05M000747 ORTHO05M004751 4.9e-06 55.5 79 40.5
EJB05_48262 Eragrostis curvula HOM05M000747 ORTHO05M004751 4.9e-06 55.5 77 39.0
MBI18_g31601_MAGBIO Magnolia biondii HOM05M000747 ORTHO05M001208 4.9e-06 55.5 37 64.9
Solyc11g008490.3 Solanum lycopersicum HOM05M000747 ORTHO05M001208 4.9e-06 55.5 73 41.1
EJB05_25619 Eragrostis curvula HOM05M008033 ORTHO05M007676 6.4e-06 55.1 80 33.8
OB09G21660 Oryza brachyantha HOM05M000747 ORTHO05M004751 6.4e-06 55.1 79 40.5
CALSI_Maker00041367 Calamus simplicifolius HOM05M000747 ORTHO05M001208 8.4e-06 54.7 37 59.5
CDE09G0859 Ceratophyllum demersum HOM05M000747 ORTHO05M001208 8.4e-06 54.7 41 58.5
Misin03G041800 Miscanthus sinensis HOM05M008033 ORTHO05M007676 8.4e-06 54.7 82 36.6
Sspon.02G0041960-1B Saccharum spontaneum HOM05M008033 ORTHO05M007676 8.4e-06 54.7 82 36.6


User provided reference genes

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