Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EJB05_00462 Eragrostis curvula HOM05M002044 ORTHO05M003016 1.3e-235 818.5 416 100.0
Ot_Chr10_g18209 Oropetium thomaeum HOM05M002044 ORTHO05M003016 6.7e-203 709.9 416 88.0
Seita.3G383600 Setaria italica HOM05M002044 ORTHO05M003016 1.0e-195 686.0 417 86.3
Zm00001eb031400 Zea mays B73 HOM05M002044 ORTHO05M003016 1.8e-195 685.3 417 85.4
Zm00007a00031042 Zea mays B104 HOM05M002044 ORTHO05M003016 3.0e-195 684.5 417 85.4
Sobic.008G162000 Sorghum bicolor HOM05M002044 ORTHO05M003016 6.7e-195 683.3 421 85.0
Misin14G158600 Miscanthus sinensis HOM05M002044 ORTHO05M003016 7.4e-194 679.9 417 85.6
PH02Gene07641 Phyllostachys edulis HOM05M002044 ORTHO05M003016 2.0e-191 671.8 419 83.8
PH02Gene07636 Phyllostachys edulis HOM05M002044 ORTHO05M003016 6.5e-190 666.8 419 82.6
V3.Lp_chr5_0G1910 Lolium perenne HOM05M002044 ORTHO05M003016 6.7e-187 656.8 421 82.2
OsR498G1222079400.01 Oryza sativa ssp. indica HOM05M002044 ORTHO05M003016 2.4e-184 648.3 419 80.7
TraesCS5D03G0154600 Triticum aestivum HOM05M002044 ORTHO05M003016 2.0e-183 645.2 419 81.9
TraesCS5B03G0160200 Triticum aestivum HOM05M002044 ORTHO05M003016 7.7e-183 643.3 420 81.4
Horvu_MOREX_5H01G070000 Hordeum vulgare HOM05M002044 ORTHO05M003016 1.0e-182 642.9 418 81.1
GWHGAORA065345 Cenchrus purpureus HOM05M002044 ORTHO05M003016 3.2e-181 637.9 356 89.3
TRIDC5BG010550 Triticum dicoccoides HOM05M002044 ORTHO05M003016 2.7e-180 634.8 420 80.5
GWHGAORA014540 Cenchrus purpureus HOM05M002044 ORTHO05M003016 3.6e-180 634.4 379 85.5
GWHGAZTO067648 Oryza alta HOM05M002044 ORTHO05M003016 3.6e-180 634.4 419 79.7
OsKitaake12g206200 Oryza sativa Kitaake HOM05M002044 ORTHO05M003016 1.0e-179 632.9 360 87.5
Os12g0608600 Oryza sativa ssp. japonica HOM05M002044 ORTHO05M003016 1.0e-179 632.9 360 87.5
Sspon.02G0030830-4D Saccharum spontaneum HOM05M002044 ORTHO05M003016 2.6e-178 628.2 419 81.4
GWHGAORA034743 Cenchrus purpureus HOM05M002044 ORTHO05M003016 3.4e-178 627.9 357 87.7
Bradi4g02267 Brachypodium distachyon HOM05M002044 ORTHO05M003016 9.8e-178 626.3 426 77.9
OB12G25050 Oryza brachyantha HOM05M002044 ORTHO05M003016 3.1e-176 621.3 419 79.5
Sspon.02G0030830-3C Saccharum spontaneum HOM05M002044 ORTHO05M003016 1.6e-175 619.0 427 79.6
AET5Gv20155100 Aegilops tauschii HOM05M002044 ORTHO05M003016 2.9e-174 614.8 409 79.0
TRITD5Av1G023170 Triticum turgidum HOM05M002044 ORTHO05M003016 1.4e-171 605.9 446 72.9
Zjn_sc00105.1.g01510.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002044 ORTHO05M003016 7.5e-170 600.1 417 78.2
TraesCS5A03G0131700 Triticum aestivum HOM05M002044 ORTHO05M003016 2.9e-166 588.2 358 81.6
TRITD5Bv1G027100 Triticum turgidum HOM05M002044 ORTHO05M003016 1.8e-163 578.9 328 86.9
GWHGASIY024509 Secale cereale HOM05M002044 ORTHO05M003016 3.0e-163 578.2 419 74.5
Aco005040 Ananas comosus HOM05M002044 ORTHO05M003016 3.4e-162 574.7 422 69.4
GWHGAZTO015816 Oryza alta HOM05M002044 ORTHO05M003016 2.9e-158 561.6 387 78.8
evm.TU.AsparagusV1_03.634.V1.1 Asparagus officinalis HOM05M002044 ORTHO05M003016 9.8e-154 546.6 370 71.4
MBI02_g18168_MAGBIO Magnolia biondii HOM05M002044 ORTHO05M003016 6.4e-153 543.9 343 76.1
TRIDC5AG008010 Triticum dicoccoides HOM05M002044 ORTHO05M003016 3.2e-152 541.6 281 91.1
CALSI_Maker00006634 Calamus simplicifolius HOM05M002044 ORTHO05M003016 1.6e-151 539.3 349 73.1
Sspon.02G0030830-1A Saccharum spontaneum HOM05M002044 ORTHO05M003016 6.0e-151 537.3 481 68.4
p5.00_sc00165_p0023 Elaeis guineensis HOM05M002044 ORTHO05M003016 1.7e-150 535.8 341 75.4
Sevir.3G400100 Setaria viridis HOM05M002044 ORTHO05M003016 3.3e-149 531.6 273 93.8
Potri.007G069300 Populus trichocarpa HOM05M002044 ORTHO05M003016 7.3e-149 530.4 303 80.2
Pahal.3G492100 Panicum hallii HOM05M002044 ORTHO05M003016 9.5e-149 530.0 274 92.7
Glyma.08G167100 Glycine max HOM05M002044 ORTHO05M003016 4.7e-148 527.7 324 78.1
HPP92_013192 Vanilla planifolia HOM05M002044 ORTHO05M003016 1.4e-147 526.2 353 70.3
Ma09_g26720 Musa acuminata HOM05M002044 ORTHO05M003016 5.2e-147 524.2 316 77.8
Solyc07g066580.3 Solanum lycopersicum HOM05M002044 ORTHO05M003016 5.8e-146 520.8 320 76.9
ATR0763G120 Amborella trichopoda HOM05M002044 ORTHO05M003016 2.9e-145 518.5 303 79.9
Spipo5G0036100 Spirodela polyrhiza HOM05M002044 ORTHO05M003016 5.4e-144 514.2 339 72.9
Asa4G04741 Allium sativum HOM05M002044 ORTHO05M003016 2.7e-143 511.9 321 74.1
Solyc02g078990.4 Solanum lycopersicum HOM05M002044 ORTHO05M003016 3.3e-141 505.0 327 73.7
Potri.005G095300 Populus trichocarpa HOM05M002044 ORTHO05M003016 1.6e-140 502.7 292 79.8
AT1G79230 Arabidopsis thaliana HOM05M002044 ORTHO05M003016 6.4e-137 490.7 411 61.3
p5.00_sc00022_p0010 Elaeis guineensis HOM05M002044 ORTHO05M003016 1.9e-136 489.2 287 77.7
DDU272G0213 Dioscorea dumetorum HOM05M002044 ORTHO05M003016 2.3e-134 482.3 501 54.5
AT1G16460 Arabidopsis thaliana HOM05M002044 ORTHO05M003016 7.3e-133 477.2 319 71.8
SEGI_21826 Sequoiadendron giganteum HOM05M002044 ORTHO05M003016 6.2e-132 474.2 322 69.6
Spipo13G0051100 Spirodela polyrhiza HOM05M002044 ORTHO05M003016 3.1e-131 471.9 297 72.4
Glyma.15G260300 Glycine max HOM05M002044 ORTHO05M003016 8.9e-131 470.3 293 77.5
GWHGAORA034730 Cenchrus purpureus HOM05M002044 ORTHO05M003016 2.6e-130 468.8 242 93.4
Dexi3B01G0036640 Digitaria exilis HOM05M002044 ORTHO05M003016 1.7e-129 466.1 315 81.0
Ma03_g24720 Musa acuminata HOM05M002044 ORTHO05M003016 2.7e-127 458.8 299 67.9
Zosma01g15310 Zostera marina HOM05M002044 ORTHO05M003016 4.8e-124 448.0 352 61.4
Zosma02g23650 Zostera marina HOM05M002044 ORTHO05M003016 1.8e-123 446.0 337 63.2
DDU305G0023 Dioscorea dumetorum HOM05M002044 ORTHO05M003016 6.9e-123 444.1 585 46.5
TRITD6Bv1G061080 Triticum turgidum HOM05M002044 ORTHO05M003016 9.9e-122 440.3 314 62.4
Ot_Chr1_g26887 Oropetium thomaeum HOM05M002044 ORTHO05M003016 2.9e-121 438.7 338 59.5
EJB05_24449 Eragrostis curvula HOM05M002044 ORTHO05M003016 2.4e-120 435.6 292 66.1
GWHGAZTO016706 Oryza alta HOM05M002044 ORTHO05M003016 5.4e-120 434.5 296 63.5
EJB05_24474 Eragrostis curvula HOM05M002044 ORTHO05M003016 7.1e-120 434.1 292 66.1
TRIDC6BG025150 Triticum dicoccoides HOM05M002044 ORTHO05M003016 9.3e-120 433.7 296 64.2
Pahal.1G048300 Panicum hallii HOM05M002044 ORTHO05M003016 2.1e-119 432.6 304 63.5
Aco008399 Ananas comosus HOM05M002044 ORTHO05M003016 2.7e-119 432.2 280 70.7
PH02Gene09137 Phyllostachys edulis HOM05M002044 ORTHO05M003016 2.7e-119 432.2 302 64.9
Mapoly0058s0078 Marchantia polymorpha HOM05M002044 ORTHO05M003016 3.5e-119 431.8 328 62.2
GWHGASIY031327 Secale cereale HOM05M002044 ORTHO05M003016 4.6e-119 431.4 296 63.9
OsKitaake02g053200 Oryza sativa Kitaake HOM05M002044 ORTHO05M003016 1.0e-118 430.3 296 63.2
OsR498G0203040500.01 Oryza sativa ssp. indica HOM05M002044 ORTHO05M003016 1.0e-118 430.3 296 63.2
Os02g0167100 Oryza sativa ssp. japonica HOM05M002044 ORTHO05M003016 1.0e-118 430.3 296 63.2
PH02Gene38128 Phyllostachys edulis HOM05M002044 ORTHO05M003016 1.0e-118 430.3 292 65.4
OB02G14340 Oryza brachyantha HOM05M002044 ORTHO05M003016 2.3e-118 429.1 292 65.8
TRIDC6AG019130 Triticum dicoccoides HOM05M002044 ORTHO05M003016 2.3e-118 429.1 296 63.2
Seita.1G076100 Setaria italica HOM05M002044 ORTHO05M003016 3.9e-118 428.3 304 63.2
TraesCS6A03G0333400 Triticum aestivum HOM05M002044 ORTHO05M003016 3.9e-118 428.3 296 63.2
Bradi3g04987 Brachypodium distachyon HOM05M002044 ORTHO05M003016 5.1e-118 427.9 296 64.2
GWHGAZTO068447 Oryza alta HOM05M002044 ORTHO05M003016 5.1e-118 427.9 296 62.8
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05M002044 ORTHO05M003016 6.6e-118 427.6 329 62.6
Sevir.1G074400 Setaria viridis HOM05M002044 ORTHO05M003016 1.5e-117 426.4 304 62.8
Horvu_MOREX_6H01G184000 Hordeum vulgare HOM05M002044 ORTHO05M003016 3.3e-117 425.2 297 63.0
TraesCS6D03G0285100 Triticum aestivum HOM05M002044 ORTHO05M003016 5.6e-117 424.5 318 59.4
Misin17G252700 Miscanthus sinensis HOM05M002044 ORTHO05M003016 7.3e-117 424.1 297 63.6
GWHGASIY031326 Secale cereale HOM05M002044 ORTHO05M003016 2.8e-116 422.2 304 61.5
TraesCS6A03G0333200 Triticum aestivum HOM05M002044 ORTHO05M003016 1.4e-115 419.9 305 61.0
TraesCS6D03G0285200 Triticum aestivum HOM05M002044 ORTHO05M003016 4.0e-115 418.3 304 61.2
Zosma05g19670 Zostera marina HOM05M002044 ORTHO05M003016 1.2e-114 416.8 304 61.5
Horvu_MOREX_6H01G183900 Hordeum vulgare HOM05M002044 ORTHO05M003016 3.4e-114 415.2 304 60.5
TraesCS6B03G0430600 Triticum aestivum HOM05M002044 ORTHO05M003016 7.6e-114 414.1 304 60.5
TRITD6Bv1G061070 Triticum turgidum HOM05M002044 ORTHO05M003016 7.6e-114 414.1 304 60.5
Bradi3g04981 Brachypodium distachyon HOM05M002044 ORTHO05M003016 1.3e-113 413.3 296 61.1
Pp3c9_17670 Physcomitrium patens HOM05M002044 ORTHO05M003016 1.8e-110 402.9 316 59.2
Zjn_sc00088.1.g01650.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002044 ORTHO05M003016 8.7e-110 400.6 316 74.1
GWHGAORA015500 Cenchrus purpureus HOM05M002044 ORTHO05M003016 3.7e-108 395.2 303 60.1
Zm00001eb207410 Zea mays B73 HOM05M002044 ORTHO05M003016 6.2e-108 394.4 329 55.9
Sobic.004G053000 Sorghum bicolor HOM05M002044 ORTHO05M003016 1.1e-107 393.7 297 60.9
HPP92_013209 Vanilla planifolia HOM05M002044 ORTHO05M003016 1.0e-105 387.1 353 56.7
Zm00007a00007149 Zea mays B104 HOM05M002044 ORTHO05M003016 6.5e-105 384.4 300 60.0
GWHGAORA015463 Cenchrus purpureus HOM05M002044 ORTHO05M003016 7.1e-104 380.9 303 58.7
SMO119G0061 Selaginella moellendorffii HOM05M002044 ORTHO05M003016 3.5e-103 378.6 296 61.5
CDE06G2006 Ceratophyllum demersum HOM05M002044 ORTHO05M003016 4.3e-101 371.7 235 72.3
MisinT080800 Miscanthus sinensis HOM05M002044 ORTHO05M003016 1.0e-97 360.5 198 88.4
TRITD6Av1G048650 Triticum turgidum HOM05M002044 ORTHO05M003016 2.9e-97 359.0 247 63.2
CALSI_Maker00047542 Calamus simplicifolius HOM05M002044 ORTHO05M003016 6.5e-97 357.8 262 66.8
Misin17G179000 Miscanthus sinensis HOM05M002044 ORTHO05M003016 7.2e-96 354.4 300 57.0
Misin17G183500 Miscanthus sinensis HOM05M002044 ORTHO05M003016 9.3e-96 354.0 297 56.9
Sspon.04G0017580-1A Saccharum spontaneum HOM05M002044 ORTHO05M003016 1.1e-93 347.1 303 54.8
GWHGAORA058454 Cenchrus purpureus HOM05M002044 ORTHO05M003016 1.3e-89 333.6 304 54.3
CDE02G0962 Ceratophyllum demersum HOM05M002044 ORTHO05M003016 1.1e-88 330.5 235 67.2
Misin17G252500 Miscanthus sinensis HOM05M002044 ORTHO05M003016 2.3e-86 322.8 275 54.9
EJB05_45686 Eragrostis curvula HOM05M004748 ORTHO05M005920 1.3e-84 317.0 312 50.3
Dexi1A01G0005200 Digitaria exilis HOM05M002044 ORTHO05M003016 1.3e-81 307.0 315 49.5
Sspon.04G0017580-2C Saccharum spontaneum HOM05M002044 ORTHO05M003016 2.2e-76 289.7 231 59.7
CBR_g17038 Chara braunii HOM05M002044 ORTHO05M003016 1.2e-74 283.9 344 43.6
GWHGAORA058436 Cenchrus purpureus HOM05M002044 ORTHO05M003016 2.6e-74 282.7 213 60.6
MCO09G588 Micromonas commoda HOM05M002044 ORTHO05M003016 7.7e-74 281.2 296 50.7
AET6Gv20358500 Aegilops tauschii HOM05M002044 ORTHO05M003016 1.5e-72 276.9 194 59.8
PRCOL_00006295 Prasinoderma coloniale HOM05M002044 ORTHO05M003016 2.7e-71 272.7 308 47.1
Ot_Chr7_gn37617 Oropetium thomaeum HOM05M002044 ORTHO05M003016 8.0e-71 271.2 191 60.7
Cre13.g607050 Chlamydomonas reinhardtii HOM05M002044 ORTHO05M003016 5.2e-70 268.5 361 42.1
Misin08G051600 Miscanthus sinensis HOM05M002044 ORTHO05M003016 2.4e-67 259.6 359 40.9
Sspon.02G0030830-2B Saccharum spontaneum HOM05M002044 ORTHO05M003016 3.4e-61 239.2 199 69.8
Sspon.04G0017550-4D Saccharum spontaneum HOM05M002044 ORTHO05M003016 2.2e-57 226.5 297 42.4
Misin07G051700 Miscanthus sinensis HOM05M002044 ORTHO05M003016 6.5e-57 224.9 137 72.3
Sspon.02G0045020-1B Saccharum spontaneum HOM05M002044 ORTHO05M230733 7.2e-56 221.5 187 74.9
CALSI_Maker00025262 Calamus simplicifolius HOM05M002044 ORTHO05M003016 8.0e-55 218.0 181 61.3
Dexi1B01G0004910 Digitaria exilis HOM05M002044 ORTHO05M003016 3.4e-53 212.6 281 43.1
DexiUA01G0026020 Digitaria exilis HOM05M002044 ORTHO05M003016 9.8e-53 211.1 300 38.0
Sspon.04G0017550-2B Saccharum spontaneum HOM05M002044 ORTHO05M003016 4.0e-46 189.1 206 47.6
TRIDC2BG052890 Triticum dicoccoides HOM05M002044 ORTHO05M016518 1.5e-40 170.6 96 87.5
TRITD2Bv1G172220 Triticum turgidum HOM05M002044 ORTHO05M016518 1.5e-40 170.6 96 87.5
CALSI_Maker00048156 Calamus simplicifolius HOM05M002044 ORTHO05M017929 3.3e-40 169.5 106 73.6
TRITD2Av1G208030 Triticum turgidum HOM05M002044 ORTHO05M016518 7.3e-40 168.3 96 86.5
TRIDC2AG049960 Triticum dicoccoides HOM05M002044 ORTHO05M016518 1.2e-37 161.0 93 86.0
AET2Gv20774800 Aegilops tauschii HOM05M002044 ORTHO05M016518 5.8e-37 158.7 93 84.9
AET2Gv20776400 Aegilops tauschii HOM05M002044 ORTHO05M016518 5.8e-37 158.7 93 84.9
Misin15G049000 Miscanthus sinensis HOM05M002044 ORTHO05M003016 1.0e-33 147.9 118 55.1
Zm00007a00026911 Zea mays B104 HOM05M002044 ORTHO05M012063 1.0e-33 147.9 170 44.7
Dexi3B01G0036660 Digitaria exilis HOM05M002044 ORTHO05M017929 1.2e-31 141.0 86 81.4
Zjn_sc00037.1.g03820.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002044 ORTHO05M003016 3.6e-31 139.4 297 31.6
Sspon.04G0017560-1A Saccharum spontaneum HOM05M002044 ORTHO05M229369 1.7e-28 130.6 212 37.7
Mapoly0032s0014 Marchantia polymorpha HOM05M002044 ORTHO05M023555 8.3e-28 128.3 323 30.3
Zm00007a00022452 Zea mays B104 HOM05M002044 ORTHO05M000466 1.6e-26 124.0 90 71.1
Zm00007a00035645 Zea mays B104 HOM05M002044 ORTHO05M017103 3.5e-26 122.9 138 46.4
Zm00007a00002742 Zea mays B104 HOM05M001660 ORTHO05M001590 7.8e-26 121.7 62 93.5
CDE06G0877 Ceratophyllum demersum HOM05M002044 ORTHO05M017929 3.9e-25 119.4 63 85.7
DDU002G0280 Dioscorea dumetorum HOM05M005728 ORTHO05M007147 3.9e-25 119.4 172 44.8
Zm00007a00024487 Zea mays B104 HOM05M000174 ORTHO05M022959 2.1e-23 113.6 114 53.5
Dexi3A01G0034920 Digitaria exilis HOM05M002044 ORTHO05M029130 2.8e-23 113.2 221 41.6
DDU597G0002 Dioscorea dumetorum HOM05M005728 ORTHO05M007147 4.7e-23 112.5 156 44.2
Ma05_g07870 Musa acuminata HOM05M002044 ORTHO05M017103 1.4e-22 110.9 64 76.6
Zm00007a00010681 Zea mays B104 HOM05M003477 ORTHO05M022959 2.3e-22 110.2 123 49.6
CALSI_Maker00048164 Calamus simplicifolius HOM05M002044 ORTHO05M017929 3.4e-21 106.3 89 58.4
Horvu_MOREX_3H01G662800 Hordeum vulgare HOM05M002044 ORTHO05M017103 2.9e-20 103.2 64 71.9
Zm00007a00022453 Zea mays B104 HOM05M003477 ORTHO05M004462 4.9e-20 102.4 111 55.0
Zm00007a00011332 Zea mays B104 HOM05M003477 ORTHO05M022959 2.7e-18 96.7 114 49.1
TraesCS6B03G0430700 Triticum aestivum HOM05M002044 ORTHO05M017103 1.1e-16 91.3 87 52.9
Zm00007a00010187 Zea mays B104 HOM05M003477 ORTHO05M004462 1.1e-16 91.3 53 83.0
Solyc06g009850.3 Solanum lycopersicum HOM05M002044 ORTHO05M248917 4.3e-16 89.4 120 44.2
Zm00007a00005071 Zea mays B104 HOM05M002044 ORTHO05M277765 2.1e-15 87.0 79 55.7
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05M002044 ORTHO05M023555 8.1e-15 85.1 270 30.4
Zm00007a00040964 Zea mays B104 HOM05M002044 ORTHO05M275930 1.1e-14 84.7 51 84.3
Zm00007a00004595 Zea mays B104 HOM05M002044 ORTHO05M018928 1.8e-14 84.0 46 87.0
Zm00007a00037833 Zea mays B104 HOM05M002044 ORTHO05M018928 1.8e-14 84.0 46 87.0
Zm00007a00038677 Zea mays B104 HOM05M002044 ORTHO05M018928 1.8e-14 84.0 46 87.0
Solyc06g009860.1 Solanum lycopersicum HOM05M002044 ORTHO05M017929 9.3e-11 71.6 46 65.2
CALSI_Maker00006611 Calamus simplicifolius HOM05M002044 ORTHO05M017929 1.2e-10 71.2 72 48.6
GWHGAZTO015810 Oryza alta HOM05M002044 ORTHO05M167899 2.5e-08 63.5 113 39.8
TRIDC7BG029460 Triticum dicoccoides HOM05M002044 ORTHO05M029130 5.6e-08 62.4 53 67.9
Zm00007a00042886 Zea mays B104 HOM05M002044 ORTHO05M017103 2.1e-07 60.5 68 47.1
Zm00007a00013522 Zea mays B104 HOM05M000169 ORTHO05M006862 3.1e-06 56.6 58 58.6


User provided reference genes

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