Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aco027516 Ananas comosus HOM05M006499 ORTHO05M008282 1.7e-183 645.2 340 100.0
Aco021395 Ananas comosus HOM05M006499 ORTHO05M008282 1.5e-168 595.5 317 98.4
evm.TU.AsparagusV1_09.1649.V1.1 Asparagus officinalis HOM05M006499 ORTHO05M008282 1.9e-99 365.9 297 68.7
p5.00_sc00603_p0004 Elaeis guineensis HOM05M006499 ORTHO05M008282 8.2e-98 360.5 304 68.1
Ma08_g28950 Musa acuminata HOM05M006499 ORTHO05M008282 3.1e-97 358.6 299 64.2
PH02Gene36479 Phyllostachys edulis HOM05M006499 ORTHO05M008282 2.6e-96 355.5 230 77.8
CALSI_Maker00028528 Calamus simplicifolius HOM05M006499 ORTHO05M008282 3.4e-96 355.1 256 75.0
GWHGAZTO011716 Oryza alta HOM05M006499 ORTHO05M008282 3.4e-96 355.1 231 76.6
GWHGAORA063451 Cenchrus purpureus HOM05M006499 ORTHO05M008282 7.6e-96 354.0 230 77.8
OB11G18860 Oryza brachyantha HOM05M006499 ORTHO05M008282 7.6e-96 354.0 263 69.2
Seita.3G023600 Setaria italica HOM05M006499 ORTHO05M008282 7.6e-96 354.0 230 77.8
Sevir.3G024300 Setaria viridis HOM05M006499 ORTHO05M008282 7.6e-96 354.0 230 77.8
OsKitaake11g115600 Oryza sativa Kitaake HOM05M006499 ORTHO05M008282 1.0e-95 353.6 231 75.8
OsR498G1119984600.01 Oryza sativa ssp. indica HOM05M006499 ORTHO05M008282 1.0e-95 353.6 231 75.8
Os11g0425300 Oryza sativa ssp. japonica HOM05M006499 ORTHO05M008282 1.0e-95 353.6 231 75.8
Sobic.001G037500 Sorghum bicolor HOM05M006499 ORTHO05M008282 1.3e-95 353.2 230 77.8
GWHGAORA020980 Cenchrus purpureus HOM05M006499 ORTHO05M008282 1.7e-95 352.8 294 66.7
Pahal.7G322400 Panicum hallii HOM05M006499 ORTHO05M008282 1.7e-95 352.8 230 77.4
Misin02G009600 Miscanthus sinensis HOM05M006499 ORTHO05M008282 2.9e-95 352.1 230 77.4
Sspon.01G0062740-1P Saccharum spontaneum HOM05M006499 ORTHO05M008282 8.4e-95 350.5 230 77.0
Ot_Chr10_g26473 Oropetium thomaeum HOM05M006499 ORTHO05M008282 1.1e-94 350.1 275 67.6
Sspon.01G0062740-2P Saccharum spontaneum HOM05M006499 ORTHO05M008282 1.1e-94 350.1 225 79.1
Zm00001eb169280 Zea mays B73 HOM05M006499 ORTHO05M008282 1.9e-94 349.4 230 77.0
Zm00007a00003481 Zea mays B104 HOM05M006499 ORTHO05M008282 1.9e-94 349.4 230 77.0
Horvu_MOREX_5H01G102400 Hordeum vulgare HOM05M006499 ORTHO05M008282 3.2e-94 348.6 270 67.8
Spipo4G0046100 Spirodela polyrhiza HOM05M006499 ORTHO05M008282 7.1e-94 347.4 217 80.2
GWHGASIY006766 Secale cereale HOM05M006499 ORTHO05M008282 1.2e-93 346.7 270 67.8
GWHGASIY024553 Secale cereale HOM05M006499 ORTHO05M008282 1.2e-93 346.7 270 67.8
GWHGASIY029289 Secale cereale HOM05M006499 ORTHO05M008282 1.2e-93 346.7 270 67.8
AET5Gv20181700 Aegilops tauschii HOM05M006499 ORTHO05M008282 1.6e-93 346.3 230 75.2
TraesCS5D03G0180400 Triticum aestivum HOM05M006499 ORTHO05M008282 1.6e-93 346.3 230 75.2
TraesCS5A03G0163200 Triticum aestivum HOM05M006499 ORTHO05M008282 2.1e-93 345.9 230 74.8
TRITD5Av1G031500 Triticum turgidum HOM05M006499 ORTHO05M008282 2.1e-93 345.9 230 74.8
Asa6G03799 Allium sativum HOM05M006499 ORTHO05M008282 2.7e-93 345.5 226 76.5
Dexi7A01G0021620 Digitaria exilis HOM05M006499 ORTHO05M008282 1.3e-92 343.2 230 75.2
AT5G48470 Arabidopsis thaliana HOM05M006499 ORTHO05M008282 1.8e-92 342.8 212 78.8
Dexi7B01G0022310 Digitaria exilis HOM05M006499 ORTHO05M008282 1.8e-92 342.8 230 75.2
Bradi4g19560 Brachypodium distachyon HOM05M006499 ORTHO05M008282 3.9e-92 341.7 230 74.3
TRIDC5BG011480 Triticum dicoccoides HOM05M006499 ORTHO05M008282 5.1e-92 341.3 230 74.3
DDU556G0503 Dioscorea dumetorum HOM05M006499 ORTHO05M008282 6.7e-92 340.9 263 68.8
Solyc09g056160.4 Solanum lycopersicum HOM05M006499 ORTHO05M008282 1.1e-91 340.1 211 79.6
TRITD5Bv1G030290 Triticum turgidum HOM05M006499 ORTHO05M008282 1.1e-91 340.1 270 66.7
HPP92_024258 Vanilla planifolia HOM05M006499 ORTHO05M008282 1.5e-91 339.7 210 79.5
V3.Lp_chr5_0G1308 Lolium perenne HOM05M006499 ORTHO05M008282 9.7e-91 337.0 230 73.9
EJB05_28148 Eragrostis curvula HOM05M006499 ORTHO05M008282 1.3e-90 336.7 262 68.3
Zosma04g00840 Zostera marina HOM05M006499 ORTHO05M008282 1.6e-90 336.3 233 73.4
TRIDC5AG009850 Triticum dicoccoides HOM05M006499 ORTHO05M008282 5.3e-89 331.3 205 78.5
ATR0686G167 Amborella trichopoda HOM05M006499 ORTHO05M008282 6.9e-89 330.9 206 79.1
Potri.002G251400 Populus trichocarpa HOM05M006499 ORTHO05M008282 6.9e-89 330.9 209 76.6
Glyma.03G089700 Glycine max HOM05M006499 ORTHO05M008282 6.1e-85 317.8 207 75.4
Glyma.16G083300 Glycine max HOM05M006499 ORTHO05M008282 7.9e-85 317.4 207 75.4
Zjn_sc00114.1.g00610.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M006499 ORTHO05M008282 1.4e-84 316.6 189 83.1
SEGI_39839 Sequoiadendron giganteum HOM05M006499 ORTHO05M008282 9.1e-73 277.3 232 62.5
Sspon.01G0062740-1D Saccharum spontaneum HOM05M006499 ORTHO05M008282 1.4e-68 263.5 177 75.7
Misin09G113600 Miscanthus sinensis HOM05M006499 ORTHO05M008282 2.6e-67 259.2 177 74.6
TraesCS5B03G0169300 Triticum aestivum HOM05M006499 ORTHO05M008282 3.1e-65 252.3 217 63.6
MBI11_g07407_MAGBIO Magnolia biondii HOM05M006499 ORTHO05M001517 1.7e-58 229.9 146 78.8
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05M006499 ORTHO05M008282 4.8e-58 228.4 211 52.1
CDE09G0438 Ceratophyllum demersum HOM05M006499 ORTHO05M008282 1.1e-57 227.3 133 82.0
Pp3c19_21450 Physcomitrium patens HOM05M006499 ORTHO05M008282 8.0e-53 211.1 290 43.1
Mapoly0125s0038 Marchantia polymorpha HOM05M006499 ORTHO05M008282 2.0e-51 206.5 217 46.1
SMO367G1011 Selaginella moellendorffii HOM05M006499 ORTHO05M008282 7.0e-49 198.0 207 47.3
HPP92_024262 Vanilla planifolia HOM05M006499 ORTHO05M008282 1.9e-38 163.3 97 81.4
CBR_g12604 Chara braunii HOM05M005246 ORTHO05M006744 7.5e-27 124.8 200 38.5
CDE02G0544 Ceratophyllum demersum HOM05M006499 ORTHO05M008282 6.0e-24 115.2 82 69.5
MCO11G451 Micromonas commoda HOM05M006499 ORTHO05M008282 3.6e-13 79.3 152 32.2
Cre09.g393800 Chlamydomonas reinhardtii HOM05M006499 ORTHO05M008282 1.3e-10 70.9 182 30.2


User provided reference genes

Program Settings