Gene: AT4G18750

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G18750
  • Transcript Identifier AT4G18750.1
  • Gene Type Coding gene
  • Location Chr4 : 10304850-10307465 : positive

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT4G18750.1
  • symbol DOT4
  • full_name DEFECTIVELY ORGANIZED TRIBUTARIES 4
  • uniprot Q9SN39

Descriptions

  • Description Pentatricopeptide repeat (PPR) superfamily protein
  • Computational description DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010087
IMP
Gene Ontologyphloem or xylem histogenesis1
GO:0010305
IMP
Gene Ontologyleaf vascular tissue pattern formation1
GO:0010588
IMP
Gene Ontologycotyledon vascular tissue pattern formation1
GO:0048366
IMP
Gene Ontologyleaf development1
GO:1900865
IMP
Gene Ontologychloroplast RNA modification2
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IMP
Gene Ontologychloroplast2
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
IPR032867 DYW domain
Mapman id Description
16.11.3.3.4.59 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (DOT4)