Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
arahy.Tifrunner.gnm1.ann1.RZ3VA1PTHR24073:SF475 - RAS-RELATED PROTEIN RABH1C-RELATEDarahy.Tifrunner.gnm1.Arahy.10-View
arahy.Tifrunner.gnm1.ann1.UY4KU0K07904 - Ras-related protein Rab-11A (RAB11A)arahy.Tifrunner.gnm1.Arahy.03-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensisActinidia28234Lachesis_group25-View
Actinidia chinensisActinidia28862Lachesis_group8+View
Arabidopsis lyrataAL6G20760scaffold_6+View
Arabidopsis lyrataAL7G12130scaffold_7+View
Arabidopsis lyrataAL4G11780scaffold_4+View
Avicennia marinaMSTRG.3779ScioBoG_102836_HRSCAF_103072-View
Avicennia marinaMSTRG.23344ScioBoG_3895_HRSCAF_3912+View
Avicennia marinaMSTRG.2577ScioBoG_102835_HRSCAF_103059+View
Amaranthus hybridusAh.03g143570Ras-related protein RABH1e (AtRABH1e)AmaHy_arrow1_Scaffold_3+View
Aquilegia oxysepalaAqoxy6G00793CHR06-View
Arabidopsis thalianaAT4G39890RAB GTPase homolog H1C RAB GTPase homolog H1C (RABH1c)%3B FUNCTIONS IN: protein binding%2C GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab6-related (InterPro:IPR015600)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1D (TAIR:AT2G22290.1)%3B Has 29075 Blast hits to 29047 proteins in 763 species: Archae - 19%3B Bacteria - 140%3B Metazoa - 15282%3B Fungi - 4003%3B Plants - 3503%3B Viruses - 20%3B Other Eukaryotes - 6108 (source: NCBI BLink).Chr4+View
Arabidopsis thalianaAT5G10260RAB GTPase homolog H1E RAB GTPase homolog H1E (RABH1e)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab6-related (InterPro:IPR015600)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1D (TAIR:AT2G22290.1)%3B Has 27017 Blast hits to 26988 proteins in 737 species: Archae - 21%3B Bacteria - 160%3B Metazoa - 14299%3B Fungi - 3762%3B Plants - 2966%3B Viruses - 20%3B Other Eukaryotes - 5789 (source: NCBI BLink).Chr5+View
Arabidopsis thalianaAT2G22290RAB GTPase homolog H1D RAB GTPase homolog H1D (RABH1d)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab6-related (InterPro:IPR015600)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1)%3B Has 26960 Blast hits to 26930 proteins in 721 species: Archae - 17%3B Bacteria - 142%3B Metazoa - 14130%3B Fungi - 3768%3B Plants - 3162%3B Viruses - 20%3B Other Eukaryotes - 5721 (source: NCBI BLink).Chr2+View
Arabidopsis thalianaAT5G65270RAB GTPase homolog A4A RAB GTPase homolog A4A (RABA4a)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: protein transport%2C small GTPase mediated signal transduction%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%2C Rab11-related (InterPro:IPR015595)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4B (TAIR:AT4G39990.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5+View
Beta vulgarisEL10Ac6g15109PTHR24073:SF475 - RAS-RELATED PROTEIN RABH1C-RELATEDChr6_EL10_PGA_scaffold0+View
Camellia sinensis var. sinensisCSS0002697PREDICTED: ras-related protein RABH1e [Sesamum indicum]Chr2+View
Cannabis sativaCANSAT01G2078NC_044373.1-View
Cicer arietinum L.Ca_16515_v3Ca_LG5_v3-View
Cicer arietinum L.Ca_17739_v3Ca_LG6_v3+View
Corylus avellanaHaze_24927Similar to RABH1E: Ras-related protein RABH1e (Arabidopsis thaliana OX%3D3702)8-View
Coffea canephoraCc07_g15170Ras-related protein RABH1echr7-View
Citrus clementinaCiclev10026499m.gscaffold_7+View
Carpinus fangianaCfa002657Cfa01-View
Cardamine hirsutaCARHR246690Ras-related protein Rab-25Chr7-View
Carya illinoinensisCiPaw.03G142100K07893 - Ras-related protein Rab-6A (RAB6A)Chr03+View
Carya illinoinensisCiPaw.04G099700K07893 - Ras-related protein Rab-6A (RAB6A)Chr04+View
Cucumis meloMELO3C007742.2ras-related protein Rab11Achr08-View
Chenopodium quinoaAUR62003796RABH1E: Ras-related protein RABH1eC_Quinoa_Scaffold_2370+View
Capsella rubellaCarub.0006s0872K07893 - Ras-related protein Rab-6A (RAB6A)scaffold_6+View
Capsella rubellaCarub.0007s0182PTHR24073:SF475 - RAS-RELATED PROTEIN RABH1C-RELATEDscaffold_7+View
Daucus carotaDCAR_014223hypothetical proteinDCARv2_Chr4+View
Durio zibethinusDuzib264G0726NW_019167960.1+View
Durio zibethinusDuzib187G0083NW_019167860.1+View
Erythranthe guttataMigut.L00123scaffold_12+View
Eutrema salsugineumThhalv10026225m.gPTHR24073:SF475 - RAS-RELATED PROTEIN RABH1C-RELATEDscaffold_1+View
Fragaria x ananassaFAN19G2274K07893 - Ras-related protein Rab-6A (RAB6A)Fvb1-4-View
Fragaria x ananassaFAN28G2182K07893 - Ras-related protein Rab-6A (RAB6A)Fvb1-1+View
Fragaria x ananassaFAN26G0553K07893 - Ras-related protein Rab-6A (RAB6A)Fvb1-2-View
Fragaria vescaFvH4_1g20860K07893 - Ras-related protein Rab-6A (RAB6A)Fvb1-View
Glycine maxGlyma.05G176300K07904 - Ras-related protein Rab-11A (RAB11A)Gm05-View
Glycine maxGlyma.11G240300K07893 - Ras-related protein Rab-6A (RAB6A)Gm11+View
Glycine maxGlyma.18G015700K07904 - Ras-related protein Rab-11A (RAB11A)Gm18-View
Gossypium raimondiiGorai.007G238500Chr07-View
Lupinus albusLalb_Chr12g0203851K07893 - Ras-related protein Rab-6A (RAB6A)Lalb_Chr12+View
Lupinus albusLalb_Chr13g0295961K07893 - Ras-related protein Rab-6A (RAB6A)Lalb_Chr13-View
Lupinus albusLalb_Chr11g0075391PTHR24073:SF475 - RAS-RELATED PROTEIN RABH1C-RELATEDLalb_Chr11+View
Lotus japonicusLj4g0022684K07893 - Ras-related protein Rab-6A (RAB6A)chr4+View
Magnolia biondiiMBI02_g08717_MAGBIOAED:0.22Chr02-View
Magnolia biondiiMBI05_g19350_MAGBIOAED:0.08Chr05-View
Malus domesticaMD15G1321700RAB GTPase homolog A4AChr15-View
Malus domesticaMD01G1030600RAB GTPase homolog H1EChr01+View
Manihot esculentaManes.13G075500Chromosome13+View
Medicago truncatulaMedtr8g089985RAB GTPase-like protein A1Dchr8-View
Nelumbo nuciferaNn5g30119chr5-View
Nelumbo nuciferaNn1g05427chr1+View
Nelumbo nuciferaNn1g05349chr1+View
Olea europaeaOeu001790.1chr2+View
Prunus persicaPrupe.6G187300K07893 - Ras-related protein Rab-6A (RAB6A)Pp06+View
Pisum sativumPsat5g090200Ras familychr5LG3+View
Phaseolus vulgarisPhvul.001G253300K07904 - Ras-related protein Rab-11A (RAB11A)Chr01+View
Phaseolus vulgarisPhvul.002G256300K07893 - Ras-related protein Rab-6A (RAB6A)Chr02+View
Quercus lobataQL06p0494966-View
Rosa chinensisRcHm_v2.0_Chr2g0113471RcHm_v2.0_Chr2-View
Rhododendron simsiiRhsim08G0010700chr08+View
Striga asiaticaSGA_v2.0_scaffold111G31514scaffold111-View
Salvia bowleyanaSalBow5G2548GWHASIU00000003-View
Salvia bowleyanaSalBow5G4301GWHASIU00000003+View
Salvia bowleyanaSalBow3G0368GWHASIU00000006-View
Salix brachistaSabra05G0061900GWHAAZH00000005-View
Sechium eduleSed0027141LG10-View
Selenicereus undatusHund16288Scaffold_33677+View
Trochodendron aralioidesTAR381G1171group11-View
Theobroma cacaoThecc.01G101200RAB GTPase H1EChromosome_1-View
Tarenaya hasslerianaTHA.LOC104807693ras-related protein RABH1dNW_010963495.1-View
Trifolium pratenseTPR.G17836Tp57577_TGAC_v2_scaf_365-View
Vaccinium macrocarponvmacro18601Similar to RAB11C: Ras-related protein Rab11C (Lotus japonicus OX%3D34305)chr3_Vaccinium_macrocarpon_Stevens_v1+View
Vigna mungoVMungo1383G2353CM024070.1+View
Vigna mungoVMungo0251G0258CM024069.1-View