Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen06g032500Actin-58 - Solanum tuberosum (Potato), Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development. | actin-12 (ACT12) | FUNCTIONS IN: structural constituent of cytoskeleton | INVOLVED IN: cytoskeleton organization | LOCATED IN: mitochondrion, cytoskeleton | EXPRESSED IN: 12 plant structures | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Actin, conserved site , Actin/actin-like , Actin/actin-like conserved site | BEST Arabidopsis thaliana protein match is: actin 4Spenn-ch06+View
Sopen11g004280Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission. | actin-related protein 7 (ARP7) | CONTAINS InterPro DOMAIN/s: Actin/actin-like | BEST Arabidopsis thaliana protein match is: actin 3Spenn-ch11+View
Sopen05g032960Actin-58 - Solanum tuberosum (Potato), Encodes an actin that is expressed predominantly during reproductive development. | actin-11 (ACT11) | FUNCTIONS IN: structural constituent of cytoskeleton | INVOLVED IN: response to cyclopentenone, actin cytoskeleton organization | LOCATED IN: mitochondrion, cytoskeleton, plasma membrane | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Actin, conserved site , Actin/actin-like , Actin/actin-like conserved site | BEST Arabidopsis thaliana protein match is: actin 3Spenn-ch05-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31sc23G450sc-23-View
Acer truncatumAtru.chr12.455chr12-View
Acer truncatumAtru.chr3.3893chr3+View
Acer truncatumAtru.chr8.1968chr8+View
Actinidia chinensisActinidia37208Lachesis_group24-View
Actinidia chinensisActinidia07734Lachesis_group3+View
Actinidia chinensisActinidia34404Lachesis_group15-View
Arabidopsis lyrataAL5G25390scaffold_5+View
Amaranthus hybridusAh.08g219470ActinAmaHy_arrow1_Scaffold_8+View
Aquilegia oxysepalaAqoxy4G02914CHR04+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.E6VM83PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDarahy.Tifrunner.gnm1.Arahy.13+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.4PL1ZQPTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDarahy.Tifrunner.gnm1.Arahy.03+View
Arabidopsis thalianaAT2G37620actin 1 Member of the actin gene family. Expressed in mature pollen. actin 1 (ACT1)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%2C root hair elongation%2C developmental growth%3B LOCATED IN: cell wall%2C cytoskeleton%2C plasma membrane%3B EXPRESSED IN: ovule%2C vascular bundle%2C male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1)%3B Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8%3B Bacteria - 15%3B Metazoa - 5741%3B Fungi - 5229%3B Plants - 1611%3B Viruses - 2%3B Other Eukaryotes - 2624 (source: NCBI BLink).Chr2+View
Arabidopsis thalianaAT3G46520actin-12 Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs%2C low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues%2C tapetum%2C developing and mature pollen%2C the root cap and in a ring of pericycle tissues during lateral root initiation and early development. actin-12 (ACT12)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: cytoskeleton organization%3B LOCATED IN: mitochondrion%2C cytoskeleton%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Actin%2C conserved site (InterPro:IPR004001)%2C Actin/actin-like (InterPro:IPR004000)%2C Actin/actin-like conserved site (InterPro:IPR020902)%3B BEST Arabidopsis thaliana protein match is: actin 4 (TAIR:AT5G59370.2)%3B Has 15176 Blast hits to 14784 proteins in 3040 species: Archae - 8%3B Bacteria - 8%3B Metazoa - 5711%3B Fungi - 5220%3B Plants - 1602%3B Viruses - 2%3B Other Eukaryotes - 2625 (source: NCBI BLink).Chr3+View
Beta vulgarisEL10Ac7g16009PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDChr7_EL10_PGA_scaffold5+View
Camellia sinensis var. sinensisCSS0023400actin [Camellia sinensis]Chr1+View
Capsicum annuumCAN.G327.16PGAv.1.6.scaffold327-View
Capsicum annuumCAN.G1013.25PGAv.1.6.scaffold1013+View
Cicer arietinum L.Ca_01331_v3Ca_LG1_v3-View
Corylus avellanaHaze_17066Similar to ACT1: Actin-1 (Oryza sativa subsp. indica OX%3D39946)11+View
Corylus avellanaHaze_24087Similar to ACT1: Actin-1 (Oryza sativa subsp. indica OX%3D39946)6+View
Coffea canephoraCc06_g02700Actinchr6-View
Coffea canephoraCc01_g12770Actin-11chr1+View
Coffea canephoraCc02_g07890Actinchr2-View
Citrus clementinaCiclev10028665m.gscaffold_8+View
Carpinus fangianaCfa017387Cfa07-View
Carpinus fangianaCfa011492Cfa04+View
Cardamine hirsutaCARHR155270Actin-12Chr5-View
Carya illinoinensisCiPaw.02G183700PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDChr02+View
Carya illinoinensisCiPaw.01G287100PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDChr01+View
Citrullus lanatusClCG02G020200ActinCG_Chr02-View
Corchorus olitoriusCOL.COLO4_18501Actin-related proteinAWUE01016469.1+View
Carica papayaCpa.g.sc81.159supercontig_81-View
Carica papayaCpa.g.sc1.401supercontig_1+View
Chenopodium quinoaAUR62001795ActinC_Quinoa_Scaffold_2716-View
Chenopodium quinoaAUR62009583ActinC_Quinoa_Scaffold_2493-View
Cucumis sativus L.CsaV3_4G024970Actinchr4+View
Davidia involucrataDinv16992GWHABJS00000527+View
Davidia involucrataDinv03050GWHABJS00000004+View
Davidia involucrataDinv42941GWHABJS00000085+View
Davidia involucrataDinv43159GWHABJS00000085-View
Davidia involucrataDinv12415GWHABJS00000007+View
Davidia involucrataDinv26012GWHABJS00000009-View
Durio zibethinusDuzib168G1302NW_019168159.1-View
Durio zibethinusDuzib093G1166NW_019167937.1+View
Durio zibethinusDuzib114G0047NW_019167926.1-View
Durio zibethinusDuzib128G0296NW_019168481.1+View
Durio zibethinusDuzib106G0274NW_019168492.1+View
Durio zibethinusDuzib170G1104NW_019167871.1-View
Eucalyptus grandisEucgr.J00015Chr10-View
Erythranthe guttataMigut.J00333scaffold_10-View
Eutrema salsugineumThhalv10002572m.gPTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDscaffold_4-View
Eutrema salsugineumThhalv10016809m.gPTHR11937:SF236 - ACTIN-1-RELATEDscaffold_10+View
Fragaria x ananassaFAN06G18301.3.1.93 - Very-long-chain enoyl-CoA reductaseFvb7-2+View
Fragaria x ananassaFAN21G3867PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMEDFvb3-2+View
Fragaria x ananassaFAN25G1755PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMEDFvb3-1+View
Fragaria x ananassaFAN14G4361PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMEDFvb6-1+View
Fragaria x ananassaFAN01G08441.3.1.93 - Very-long-chain enoyl-CoA reductaseFvb7-4-View
Fragaria x ananassaFAN03G21811.3.1.93 - Very-long-chain enoyl-CoA reductaseFvb7-3-View
Fragaria x ananassaFAN16G3391PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMEDFvb3-3+View
Fragaria x ananassaFAN05G1571PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMEDFvb6-3+View
Fragaria x ananassaFAN06G16431.3.1.93 - Very-long-chain enoyl-CoA reductaseFvb7-2-View
Fragaria x ananassaFAN11G0728PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMEDFvb3-4-View
Fragaria vescaFvH4_3g35960PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMEDFvb3+View
Fragaria vescaFvH4_7g22410PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDFvb7+View
Gossypium hirsutumGohir.D07G102500PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDD07+View
Gossypium hirsutumGohir.A07G098200PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDA07+View
Gossypium hirsutumGohir.D03G126200PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDD03-View
Glycine maxGlyma.11G139800PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDGm11-View
Glycine maxGlyma.12G063400PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDGm12-View
Glycine maxGlyma.15G038700PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDGm15-View
Glycine maxGlyma.13G335600PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDGm13+View
Gossypium raimondiiGorai.003G132400Chr03-View
Gossypium raimondiiGorai.001G110400Chr01+View
Hydrangea macrophyllaHma1.2p1_0035F.1_g022330Hma1.2p1_0035F.1+View
Lupinus albusLalb_Chr19g0137811K10355 - actin, other eukaryote (ACTF)Lalb_Chr19+View
Lotus japonicusLj3g0015374K10355 - actin, other eukaryote (ACTF)chr3-View
Lotus japonicusLj3g0021164K10355 - actin, other eukaryote (ACTF)chr3-View
Lonicera japonicaLj1A937T94GWHAAZE00000001+View
Malus domesticaMD11G1110300actin 3Chr11-View
Malus domesticaMD04G1127400actin 3Chr04+View
Malus domesticaMD07G1198000actin-11Chr07+View
Malus domesticaMD03G1095300actin-11Chr03-View
Manihot esculentaManes.07G115900Chromosome07+View
Medicago truncatulaMedtr2g096840actin-97chr2+View
Nicotiana tabacumNitab4.5_0001800g0170Actin-related protein, Actin/actin-like conserved site, Actin, conserved siteNitab4.5_0001800+View
Nicotiana tabacumNitab4.5_0006994g0040Actin, conserved site, Actin-related protein, Actin/actin-like conserved siteNitab4.5_0006994+View
Petunia axillarisPeaxi162Scf00679g00410actin-11Peaxi162Scf00679+View
Petunia axillarisPeaxi162Scf00015g01118actin-11Peaxi162Scf00015-View
Petunia axillarisPeaxi162Scf00832g00019Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit APeaxi162Scf00832-View
Petunia axillarisPeaxi162Scf00165g01317actin-11Peaxi162Scf00165+View
Punica granatumPGR102G0544NC_045129.1+View
Punica granatumPGR044G2194NC_045134.1+View
Prunus persicaPrupe.6G254100PTHR11937//PTHR11937:SF210 - ACTIN // SUBFAMILY NOT NAMEDPp06+View
Prunus persicaPrupe.6G078800PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDPp06-View
Papaver somniferumPSO151G0190NW_020650971.1+View
Papaver somniferumPSO384G2669NC_039368.1-View
Papaver somniferumPSO339G5591NC_039366.1+View
Phaseolus vulgarisPhvul.011G064500PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDChr11-View
Phaseolus vulgarisPhvul.L005043PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDscaffold_15+View
Quercus lobataQL01p0322321-View
Rosa chinensisRcHm_v2.0_Chr5g0064311RcHm_v2.0_Chr5+View
Rosa chinensisRcHm_v2.0_Chr3g0466761RcHm_v2.0_Chr3-View
Rhododendron simsiiRhsim01G0227200chr01+View
Rhododendron simsiiRhsim09G0165700chr09+View
Rhododendron simsiiRhsim13G0083300chr13-View
Salvia bowleyanaSalBow4G3043GWHASIU00000008-View
Simmondsia chinensisSc21g0005740GWHAASQ00000021+View
Sechium eduleSed0007339LG14+View
Solanum lycopersicumSolyc09g010750.3Actin (AHRD V3.3 *** A0A0K1JSF1_9FABA)SL4.0ch09+View
Solanum lycopersicumSolyc05g054480.3Actin (AHRD V3.3 *** A0A2G2VVS8_CAPBA)SL4.0ch05-View
Solanum lycopersicumSolyc06g076090.3Actin (AHRD V3.3 *** A0A1U8H9K1_CAPAN)SL4.0ch06+View
Solanum lycopersicumSolyc11g065990.2Actin (AHRD V3.3 *** A0A2G2VVS8_CAPBA)SL4.0ch11-View
Solanum lycopersicumSolyc11g008500.2Actin-related protein (AHRD V3.3 *** A0A2R6Q6P8_ACTCH)SL4.0ch11+View
Schrenkiella parvulaSp4g19980PTHR11937//PTHR11937:SF236 - ACTIN // ACTIN-1-RELATEDch4-6+View
Schrenkiella parvulaSp5g15160PTHR11937//PTHR11937:SF255 - ACTIN // SUBFAMILY NOT NAMEDch5-1-View
Solanum tuberosumPGSC0003DMG400008912Actin-71ST4.03ch09-View
Solanum tuberosumPGSC0003DMG400000439Actin-11ST4.03ch11-View
Solanum tuberosumPGSC0003DMG400030319ActinST4.03ch06+View
Solanum tuberosumPGSC0003DMG400023429Actin-58ST4.03ch05-View
Selenicereus undatusHund04967Scaffold_19641-View
Selenicereus undatusHund18915Scaffold_33675-View
Trochodendron aralioidesTAR623G1620group7-View
Trochodendron aralioidesTAR633G0140group2-View
Theobroma cacaoThecc.10G042700Actin-11Chromosome_10-View
Theobroma cacaoThecc.09G322700Actin-11Chromosome_9-View
Tarenaya hasslerianaTHA.LOC104799444actinNW_010968505.1-View
Tarenaya hasslerianaTHA.LOC104810782actin-11NW_010965304.1-View
Trifolium pratenseTPR.G34313Tp57577_TGAC_v2_LG7+View
Tripterygium wilfordiiTWI15G0930NC_052247.1+View
Tripterygium wilfordiiTWI31G0558NC_052233.1-View
Tripterygium wilfordiiTWI75G1685NC_052253.1-View
Vigna mungoVMungo1080G1857CM024079.1-View
Vigna mungoVMungo1127G0262CM024076.1-View
Vitis viniferaGSVIVG01016550001chr13-View
Vitis viniferaGSVIVG01024980001chr6+View