Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen02g009530Integrase-type DNA-binding superfamily protein | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Pathogenesis-related transcriptional factor/ERF, DNA-binding | BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein ., Protein BABY BOOM 1 (BnBBM1) - Brassica napus (Rape)Spenn-ch02+View
Sopen07g007440Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental transition between the embryonic and vegetative phases in plants.Overexpression results in the formation of somatic embryos on cotyledons. | AINTEGUMENTA-like 5 (AIL5) | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Pathogenesis-related transcriptional factor/ERF, DNA-binding | BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily proteinSpenn-ch07-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG8G7670LG-8+View
Acer truncatumAtru.chr3.2583chr3-View
Actinidia chinensisActinidia16307Lachesis_group24-View
Actinidia chinensisActinidia06886Lachesis_group13-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.L4Q0K2PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2arahy.Tifrunner.gnm1.Arahy.13-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.ETC6KFPTHR32467//PTHR32467:SF22 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1arahy.Tifrunner.gnm1.Arahy.08+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.L4W2C9PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2arahy.Tifrunner.gnm1.Arahy.18+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.TN1J43PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2arahy.Tifrunner.gnm1.Arahy.03-View
Arabidopsis thalianaAT1G51190Integrase-type DNA-binding superfamily protein Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. PLETHORA 2 (PLT2)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G20840.1)%3B Has 7787 Blast hits to 5250 proteins in 253 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 4%3B Fungi - 0%3B Plants - 7694%3B Viruses - 2%3B Other Eukaryotes - 79 (source: NCBI BLink).Chr1+View
Arabidopsis thalianaAT3G20840Integrase-type DNA-binding superfamily protein Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. PLETHORA 1 (PLT1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G51190.1)%3B Has 7378 Blast hits to 5365 proteins in 273 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 48%3B Fungi - 6%3B Plants - 7088%3B Viruses - 2%3B Other Eukaryotes - 226 (source: NCBI BLink).Chr3+View
Amborella trichopodaATR0605G302AmTr_v1.0_scaffold00022+View
Brassica carinataBcaB07g33565ChrB07+View
Brassica napusC05p43220C05-View
Brassica napusA06p02610A06-View
Brassica oleraceaBolC5t33052HC5-View
Beta vulgarisEL10Ac4g10300PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Chr4_EL10_PGA_scaffold1+View
Cicer arietinum L.Ca_01284_v3Ca_LG1_v3+View
Corylus avellanaHaze_23086Similar to PLT1: AP2-like ethylene-responsive transcription factor PLT1 (Arabidopsis thaliana OX%3D3702)6+View
Citrus clementinaCiclev10014809m.gscaffold_2-View
Carya illinoinensisCiPaw.09G034000PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1Chr09-View
Carya illinoinensisCiPaw.14G121100PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Chr14-View
Citrullus lanatusClCG02G023380AP2-like ethylene-responsive transcription factorCG_Chr02+View
Cucumis meloMELO3C014609.2AP2-like ethylene-responsive transcription factor PLT1chr05-View
Carica papayaCpa.g.sc84.82supercontig_84-View
Chenopodium quinoaAUR62000095PLT2: AP2-like ethylene-responsive transcription factor PLT2C_Quinoa_Scaffold_2088-View
Chenopodium quinoaAUR62019268PLT2: AP2-like ethylene-responsive transcription factor PLT2C_Quinoa_Scaffold_3107-View
Capsella rubellaCarub.0003s2080PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1scaffold_3+View
Cucumis sativus L.CsaV3_4G024120AP2-like ethylene-responsive transcription factorchr4-View
Davidia involucrataDinv18098GWHABJS00000015-View
Davidia involucrataDinv36284GWHABJS00000007+View
Durio zibethinusDuzib150G0389NW_019167882.1+View
Erigeron canadensisECA233G1963Conyza_canadensis_scaffold:1-View
Eucalyptus grandisEucgr.J00792Chr10+View
Erythranthe guttataMigut.D00575scaffold_4-View
Eutrema salsugineumThhalv10011353m.gPTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2scaffold_7-View
Eutrema salsugineumThhalv10020382m.gPTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1scaffold_13-View
Fragaria x ananassaFAN25G1670PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Fvb3-1+View
Fragaria x ananassaFAN11G2019PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Fvb3-4+View
Fragaria x ananassaFAN16G2715PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Fvb3-3-View
Fragaria x ananassaFAN21G4057PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Fvb3-2-View
Fragaria vescaFvH4_3g43100PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Fvb3-View
Gossypium hirsutumGohir.D09G121750PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1D09+View
Glycine maxGlyma.11G131900PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1Gm11+View
Glycine maxGlyma.12G056300PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Gm12+View
Gossypium raimondiiGorai.006G139300Chr06+View
Lupinus albusLalb_Chr19g0138171PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Lalb_Chr19+View
Lotus japonicusLj3g0009796PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2chr3+View
Lotus japonicusLj3g0006458PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2chr3+View
Lotus japonicusLj1g0018891KOG0702 - Predicted GTPase-activating proteinchr1-View
Lactuca sativaLsat_1_v5_gn_6_48361PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Lsat_1_v8_lg_6-View
Magnolia biondiiMBI01_g39230_MAGBIOAED:0.34Chr01-View
Malus domesticaMD11G1028800Integrase-type DNA-binding superfamily proteinChr11+View
Malus domesticaMD14G1064900Integrase-type DNA-binding superfamily proteinChr14-View
Malus domesticaMD03G1023900Integrase-type DNA-binding superfamily proteinChr03+View
Manihot esculentaManes.14G000900Chromosome14+View
Manihot esculentaManes.06G167000Chromosome06-View
Medicago truncatulaMedtr2g098180AP2-like ethylene-responsive transcription factorchr2-View
Medicago truncatulaMedtr4g065370AP2-like ethylene-responsive transcription factorchr4-View
Nelumbo nuciferaNn2g15405chr2+View
Nelumbo nuciferaNn7g36182chr7+View
Punica granatumPGR102G1415NC_045129.1+View
Punica granatumPGR004G2659NC_045131.1-View
Prunus persicaPrupe.6G023000PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Pp06+View
Prunus persicaPrupe.7G069100PF00847 - AP2 domain (AP2)Pp07+View
Papaver somniferumPSO384G1268NC_039368.1-View
Populus trichocarpaPotri.003G205700PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Chr03-View
Populus trichocarpaPotri.001G018400PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Chr01+View
Phaseolus vulgarisPhvul.011G058000PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2Chr11+View
Phaseolus vulgarisPhvul.007G256200Chr07-View
Quercus lobataQL01p0053301+View
Rosa chinensisRcHm_v2.0_Chr5g0077201RcHm_v2.0_Chr5-View
Rhododendron simsiiRhsim13G0224200chr13+View
Striga asiaticaSGA_v2.0_scaffold247G44845scaffold247-View
Salix brachistaSabra03G0151900GWHAAZH00000003-View
Salix brachistaSabra01G0013000GWHAAZH00000001+View
Sechium eduleSed0025715LG05-View
Solanum lycopersicumSolyc11g061750.2AP2-like ethylene-responsive transcription factor PLT1 (AHRD V3.3 *** A0A2G2VMY9_CAPBA)SL4.0ch11+View
Schrenkiella parvulaSp3g18860PTHR32467//PTHR32467:SF22 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1ch3-1+View
Schrenkiella parvulaSp1g37920PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2ch1-2+View
Solanum tuberosumPGSC0003DMG400013587AP2 domain-containing transcription factorST4.03ch11+View
Selenicereus undatusHund07536Scaffold_33676+View
Trochodendron aralioidesTAR623G1723group7-View
Theobroma cacaoThecc.09G227300AP2 domain-containing transcription factorChromosome_9-View
Theobroma cacaoThecc.05G164800Integrase-type DNA-binding superfamily proteinChromosome_5+View
Tarenaya hasslerianaTHA.LOC104817898AP2-like ethylene-responsive transcription factor PLT1NW_010966021.1+View
Trifolium pratenseTPR.G6820Tp57577_TGAC_v2_LG7+View
Tripterygium wilfordiiTWI34G0104NC_052235.1+View
Tripterygium wilfordiiTWI75G1516NC_052253.1-View
Vigna mungoVMungo0720G2724CM024071.1+View
Vigna mungoVMungo1383G1237CM024070.1+View
Vigna mungoVMungo1127G0665CM024076.1+View
Vitis viniferaGSVIVG01025307001chr6-View