Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen11g009180Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1Spenn-ch11-View
Sopen01g006160Pentatricopeptide repeat (PPR) superfamily protein | LOCATED IN: mitochondrion | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 10 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22Spenn-ch01-View
Sopen03g015530Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch03-View
Sopen04g010110Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing proteinSpenn-ch04-View
Sopen11g010950Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch11-View
Sopen11g024230SLOW GROWTH 1 (SLO1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch11+View
Sopen03g016080Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch03-View
Sopen06g011360SLOW GROWTH 1 (SLO1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch06+View
Sopen04g022860Encodes a chloroplast RNA editing factor. | ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch04-View
Sopen00g004200Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch00+View
Sopen02g003370Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase. | lovastatin insensitive 1 (LOI1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch02+View
Sopen12g026150Tetratricopeptide repeat (TPR)-like superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: leaf whorl, flower, seed | EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch12+View
Sopen07g017190Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch07-View
Sopen11g019420Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch11+View
Sopen03g011980Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch03-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG5G23340LG-5-View
Acer truncatumAtru.chr12.1513chr12-View
Acer truncatumAtru.chr8.1280chr8+View
Acer truncatumAtru.chr13.2447chr13-View
Actinidia chinensisActinidia29379Lachesis_group7+View
Beta vulgarisEL10Ac7g17418PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)Chr7_EL10_PGA_scaffold5-View
Camellia sinensis var. sinensisCSS0040520PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Nelumbo nucifera]Chr12+View
Cannabis sativaCANSAT25G0297NC_044370.1+View
Cicer arietinum L.Ca_03247_v3Ca_LG1_v3-View
Cicer arietinum L.Ca_09080_v3Ca_LG3_v3+View
Erigeron canadensisECA246G4991Conyza_canadensis_scaffold:8-View
Erigeron canadensisECA240G2805Conyza_canadensis_scaffold:5-View
Erigeron canadensisECA238G0796Conyza_canadensis_scaffold:6+View
Erigeron canadensisECA248G2129Conyza_canadensis_scaffold:9+View
Erigeron canadensisECA240G4549Conyza_canadensis_scaffold:5-View
Erigeron canadensisECA248G0796Conyza_canadensis_scaffold:9+View
Erigeron canadensisECA238G2703Conyza_canadensis_scaffold:6-View
Erigeron canadensisECA248G1627Conyza_canadensis_scaffold:9+View
Gossypium hirsutumGohir.A10G134100PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2)A10+View
Gossypium raimondiiGorai.009G266500Chr09+View
Lotus japonicusLj2g0004281PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)chr2+View
Medicago truncatulaMedtr5g027980pentatricopeptide (PPR) repeat proteinchr5+View
Olea europaeaOeu060292.1chr1+View
Olea europaeaOeu018738.1chr11+View
Rosa chinensisRcHm_v2.0_Chr3g0477321RcHm_v2.0_Chr3+View
Sequoiadendron giganteumSEGI_02784chr7+View
Sapria himalayanaSHI01750scaffold3_21451142-View
Sapria himalayanaSHI14712scaffold14_12630789-View
Trifolium pratenseTPR.G34444Tp57577_TGAC_v2_LG6-View