Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen09g020520hypothetical protein | GAG/POL/ENV polyprotein.Spenn-ch09-View
Sopen11g021560hypothetical protein | DNA/RNA polymerases superfamily protein.Spenn-ch11-View
Sopen07g013680hypothetical proteinSpenn-ch07-View
Sopen07g017480hypothetical proteinSpenn-ch07+View
Sopen08g016860hypothetical protein | DNA/RNA polymerases superfamily protein.Spenn-ch08-View
Sopen07g012060hypothetical proteinSpenn-ch07-View
Sopen10g022770hypothetical proteinSpenn-ch10+View
Sopen10g007000hypothetical proteinSpenn-ch10+View
Sopen10g025400hypothetical proteinSpenn-ch10-View
Sopen06g010870Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. | VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1) | FUNCTIONS IN: protein binding | INVOLVED IN: intracellular transport | LOCATED IN: in 7 components | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: PapD-like , Major sperm protein , Vesicle-associated membrane protein | BEST Arabidopsis thaliana protein match is: plant VAP homolog 12Spenn-ch06+View
Sopen06g009380hypothetical proteinSpenn-ch06-View
Sopen10g013440hypothetical proteinSpenn-ch10-View
Sopen04g012830hypothetical proteinSpenn-ch04+View
Sopen03g012130RNA-directed DNA polymerase homolog (Reverse transcriptase homolog) - Oenothera bertiana (Berteros evening primrose), hypothetical protein | DNA/RNA polymerases superfamily protein.Spenn-ch03+View
Sopen01g009290hypothetical proteinSpenn-ch01-View
Sopen01g015540hypothetical protein | GAG/POL/ENV polyprotein.Spenn-ch01-View
Sopen12g019130hypothetical proteinSpenn-ch12+View
Sopen07g019170Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Encodes a cysteine-rich receptor-like protein kinase. | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8) | FUNCTIONS IN: kinase activity | INVOLVED IN: protein amino acid phosphorylation | CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site , Reverse transcriptase, RNA-dependent DNA polymerase , Serine/threonine-protein kinase domain , Protein of unknown function DUF26 , Serine/threonine-protein kinase-like domain , Serine/threonine-protein kinase, active site , Protein kinase-like domain , Protein kinase, catalytic domain , Tyrosine-protein kinase, catalytic domain | BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6Spenn-ch07-View
Sopen02g009380hypothetical proteinSpenn-ch02+View
Sopen10g006450hypothetical proteinSpenn-ch10+View
Sopen01g009690hypothetical protein | GAG/POL/ENV polyprotein.Spenn-ch01-View
Sopen01g025200hypothetical proteinSpenn-ch01-View
Sopen03g011640hypothetical proteinSpenn-ch03+View
Sopen01g010600hypothetical proteinSpenn-ch01+View
Sopen01g028160hypothetical proteinSpenn-ch01+View
Sopen09g010920hypothetical proteinSpenn-ch09-View
Sopen09g017830hypothetical proteinSpenn-ch09+View
Sopen10g020850hypothetical proteinSpenn-ch10+View
Sopen02g003760hypothetical proteinSpenn-ch02+View
Sopen05g011490hypothetical proteinSpenn-ch05-View
Sopen11g022490hypothetical proteinSpenn-ch11-View
Sopen07g009690hypothetical proteinSpenn-ch07-View
Sopen09g024400hypothetical protein | GAG/POL/ENV polyprotein.Spenn-ch09-View
Sopen10g025720hypothetical proteinSpenn-ch10-View
Sopen02g007200hypothetical proteinSpenn-ch02-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Erigeron canadensisECA238G4057Conyza_canadensis_scaffold:6-View
Erigeron canadensisECA236G0205Conyza_canadensis_scaffold:3+View
Erigeron canadensisECA236G2398Conyza_canadensis_scaffold:3-View
Erigeron canadensisECA233G3343Conyza_canadensis_scaffold:1-View
Erigeron canadensisECA236G3930Conyza_canadensis_scaffold:3-View
Erigeron canadensisECA232G3362Conyza_canadensis_scaffold:2-View
Erigeron canadensisECA248G1448Conyza_canadensis_scaffold:9+View
Erigeron canadensisECA248G3194Conyza_canadensis_scaffold:9+View
Erigeron canadensisECA246G2477Conyza_canadensis_scaffold:8+View
Erigeron canadensisECA247G0101Conyza_canadensis_scaffold:7-View
Erigeron canadensisECA234G4436Conyza_canadensis_scaffold:4-View
Erigeron canadensisECA238G0268Conyza_canadensis_scaffold:6-View
Erigeron canadensisECA248G1605Conyza_canadensis_scaffold:9+View
Erigeron canadensisECA232G3224Conyza_canadensis_scaffold:2+View
Erigeron canadensisECA240G1153Conyza_canadensis_scaffold:5+View
Erigeron canadensisECA246G1640Conyza_canadensis_scaffold:8+View
Erigeron canadensisECA236G2513Conyza_canadensis_scaffold:3-View
Erigeron canadensisECA232G2025Conyza_canadensis_scaffold:2-View
Erigeron canadensisECA234G2592Conyza_canadensis_scaffold:4-View
Erigeron canadensisECA236G0448Conyza_canadensis_scaffold:3+View
Erigeron canadensisECA248G2996Conyza_canadensis_scaffold:9-View
Erigeron canadensisECA246G4567Conyza_canadensis_scaffold:8-View
Erigeron canadensisECA238G0313Conyza_canadensis_scaffold:6-View
Erigeron canadensisECA238G4169Conyza_canadensis_scaffold:6+View
Erigeron canadensisECA248G3527Conyza_canadensis_scaffold:9-View
Olea europaeaOeu016850.1chr5+View
Olea europaeaOeu043237.1chr3-View
Papaver somniferumPSO339G4086NC_039366.1+View
Solanum tuberosumPGSC0003DMG400035169Integrase core domain containing proteinST4.03ch10-View
Solanum tuberosumPGSC0003DMG400044138Integrase core domain containing proteinST4.03ch11+View