Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen04g012430pentatricopeptide (PPR) repeat-containing protein | Tetratricopeptide repeat (TPR)-like superfamily protein | LOCATED IN: mitochondrion | EXPRESSED IN: root, pedicel | EXPRESSED DURING: 4 anthesis | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing proteinSpenn-ch04+View
Sopen05g027530Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: biological_process unknown | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch05+View
Sopen06g011360SLOW GROWTH 1 (SLO1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch06+View
Sopen07g011180Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch07+View
Sopen03g016890Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes. | mitochondrial RNAediting factor 1 (MEF1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch03+View
Sopen00g004200Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch00+View
Sopen00g007410Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch00-View
Sopen12g026150Tetratricopeptide repeat (TPR)-like superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: leaf whorl, flower, seed | EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch12+View
Sopen02g004430Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch02-View
Sopen07g017190Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch07-View
Sopen08g010500Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch08+View
Sopen03g016080Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch03-View
Sopen03g023970Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1Spenn-ch03+View
Sopen06g004140hypothetical proteinSpenn-ch06+View
Sopen06g008540Tetratricopeptide repeat (TPR)-like superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: leaf whorl, flower, seed | EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily proteinSpenn-ch06+View
Sopen09g022760Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22Spenn-ch09-View
Sopen12g017160hypothetical proteinSpenn-ch12-View
Sopen09g009020Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch09+View
Sopen03g015530Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily proteinSpenn-ch03-View
Sopen08g016700smr (Small MutS Related) domain-containing protein mRNA, complete cds | CID7 | FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding | INVOLVED IN: mismatch repair | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal , Region of unknown function DUF1771 | BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putativeSpenn-ch08-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensisActinidia30599Lachesis_group10-View
Avicennia marinaMSTRG.8044ScioBoG_102841_HRSCAF_103114+View
Camellia sinensis var. sinensisCSS0024748unnamed protein product [Vitis vinifera]Chr10-View
Capsicum annuumCAN.G624.17PGAv.1.6.scaffold624+View
Cicer arietinum L.Ca_04995_v3Ca_LG2_v3-View
Cicer arietinum L.Ca_19946_v3Ca_LG6_v3+View
Erigeron canadensisECA233G2266Conyza_canadensis_scaffold:1-View
Erigeron canadensisECA248G1517Conyza_canadensis_scaffold:9+View
Erigeron canadensisECA238G2703Conyza_canadensis_scaffold:6-View
Erigeron canadensisECA247G2265Conyza_canadensis_scaffold:7+View
Lotus japonicusLj2g0018559PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)chr2-View
Olea europaeaOeu051146.1chr18-View
Papaver somniferumPSO063G5446NC_039364.1+View
Papaver somniferumPSO478G1177NC_039361.1+View
Sechium eduleSed0010973LG02-View
Sequoiadendron giganteumSEGI_12045chr1+View
Sapria himalayanaSHI03611scaffold5_19632047-View
Solanum tuberosumPGSC0003DMG400024384Conserved gene of unknown functionST4.03ch01-View
Solanum tuberosumPGSC0003DMG400044401PpPPR_98 proteinST4.03ch09-View
Solanum tuberosumPGSC0003DMG400005377Pentatricopeptide repeat-containing protein, mitochondrialST4.03ch07-View
Tripterygium wilfordiiTWI18G1027NC_052241.1-View