Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen01g004230Glycosyl hydrolase superfamily protein | FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: endomembrane system | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core , Glycoside hydrolase, family 5 , Glycoside hydrolase, subgroup, catalytic core | BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily proteinSpenn-ch01+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensisActinidia11897Lachesis_group6-View
Arabidopsis lyrataAL8G10520scaffold_8+View
Amaranthus hybridusAh.09g234240Mannan endo-1,4-beta-mannosidase 6 (EC 3.2.1.78) (Beta-mannanase 6) (Endo-beta-1,4-mannanase 6) (OsMAN6)AmaHy_arrow1_Scaffold_9-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.09F2IPPF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)arahy.Tifrunner.gnm1.Arahy.01-View
Arabidopsis thalianaAT5G47460Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G09950.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5-View
Brassica carinataBcaC03g16963ChrC03-View
Brassica oleraceaBolC2t10961HC2-View
Brassica oleraceaBolC7t43653HC7-View
Brassica rapaBraA02t08137ZA02-View
Capsicum annuumCAN.G696.8PGAv.1.6.scaffold696-View
Cicer arietinum L.Ca_21026_v3Ca_LG7_v3-View
Cardamine hirsutaCARHR173900Pentatricopeptide repeat-containing proteinChr6+View
Cucumis meloMELO3C008015.2pentatricopeptide repeat-containing protein At4g13650chr08-View
Carica papayaCpa.g.sc27.255supercontig_27-View
Daucus carotaDCAR_002229hypothetical proteinDCARv2_Chr1-View
Davidia involucrataDinv19870GWHABJS00000016-View
Eucalyptus grandisEucgr.D00959Chr04+View
Eucalyptus grandisEucgr.D01436Chr04-View
Eutrema salsugineumThhalv10000835m.gPF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2)scaffold_20-View
Fragaria x ananassaFAN09G3275PF01535//PF03107//PF07649//PF12854//PF13041//PF14432 - PPR repeat (PPR) // C1 domain (C1_2) // C1-like domain (C1_3) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)Fvb6-2-View
Hydrangea macrophyllaHma1.2p1_0657F.1_g196960Hma1.2p1_0657F.1+View
Lactuca sativaLsat_1_v5_gn_9_104640PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase)Lsat_1_v8_lg_9+View
Magnolia biondiiMBI19_g25582_MAGBIOAED:0.23Chr19-View
Magnolia biondiiMBI16_g36317_MAGBIOAED:0.22Chr16-View
Malus domesticaMD17G1113300Tetratricopeptide repeat (TPR)-like superfamily proteinChr17+View
Malus domesticaMD09G1122400Tetratricopeptide repeat (TPR)-like superfamily proteinChr09+View
Nelumbo nuciferaNn1g03236chr1+View
Nicotiana tabacumNitab4.5_0002499g0020Pentatricopeptide repeat, Tetratricopeptide-like helicalNitab4.5_0002499+View
Punica granatumPGR042G2285NC_045130.1-View
Pisum sativumPsat4g002320Ribosomal S17chr4LG4-View
Papaver somniferumPSO675G9355NC_039358.1+View
Rhododendron simsiiRhsim02G0101500chr02-View
Sechium eduleSed0005021LG14+View
Solanum lycopersicumSolyc01g008710.5.1mannan endo-1,4-beta-mannosidaseSL4.0ch01+View
Solanum lycopersicumSolyc11g012570.3Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2U1PDA5_ARTAN)SL4.0ch11-View
Solanum tuberosumPGSC0003DMG400013357Binding proteinST4.03ch11+View
Vaccinium macrocarponvmacro15742Similar to PCMP-H71: Pentatricopeptide repeat-containing protein At1g74630 (Arabidopsis thaliana OX%3D3702)chr4_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo0647G1279CM024073.1+View