Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen04g006490Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA, 1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). | PASTICCINO 2 (PAS2) | CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA | BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA ., Protein-tyrosine phosphatase-like, PTPLASpenn-ch04-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG3G16680LG-3+View
Acer truncatumAtru.chr3.1251chr3+View
Actinidia chinensisActinidia28826Lachesis_group8-View
Actinidia chinensisActinidia30847Lachesis_group25-View
Arabidopsis lyrataAL6G21000scaffold_6-View
Amaranthus hybridusAh.02g123600Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 (EC 4.2.1.134) (3-hydroxyacyl-CoA dehydratase PASTICCINO 2) (AtPAS2) (HACD) (HCD) (Protein PEPINO) (PEP) (Protein tyrosine phosphatase-like protein)AmaHy_arrow1_Scaffold_2+View
Aquilegia oxysepalaAqoxy5G01391CHR05+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.4PU0PPK10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)arahy.Tifrunner.gnm1.Arahy.15-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.Y3UPDNK10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)arahy.Tifrunner.gnm1.Arahy.05-View
Arabidopsis thalianaAT5G10480Protein-tyrosine phosphatase-like, PTPLA Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA%3B1 only in its phosphorylated form%2C preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10%2C a component of the microsomal fatty acid elongase complex%2C suggesting a role in synthesis of VLCFAs (very long chain fatty acids). PASTICCINO 2 (PAS2)%3B CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like%2C PTPLA (InterPro:IPR007482)%3B BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like%2C PTPLA (TAIR:AT5G59770.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink).Chr5-View
Amborella trichopodaATR0767G219AmTr_v1.0_scaffold00033+View
Brassica carinataBcaB01g05531ChrB01+View
Brassica carinataBcaB08g37102ChrB08+View
Brassica napusA03p04570A03-View
Brassica napusA10p27090A10+View
Brassica napusC03p05130C03-View
Brassica napusC09p66790C09+View
Brassica oleraceaBolC9t59459HC9+View
Brassica rapaBraA10t44761ZA10+View
Beta vulgarisEL10Ac6g152094.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseChr6_EL10_PGA_scaffold0+View
Camellia sinensis var. sinensisCSS00096283-hydroxyacyl-CoA dehydratase [Camellia oleifera]Chr1+View
Capsicum annuumCAN.G525.29PGAv.1.6.scaffold525+View
Capsicum annuumCAN.G1344.6PGAv.1.6.scaffold1344-View
Cicer arietinum L.Ca_22603_v3Ca_LG7_v3-View
Corylus avellanaHaze_03867Similar to PAS2A: Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A (Oryza sativa subsp. japonica OX%3D39947)2-View
Coffea canephoraCc07_g141303-hydroxyacyl-CoA dehydratase PASTICCINO 2chr7+View
Carpinus fangianaCfa006886Cfa02+View
Cardamine hirsutaCARHR2028103-hydroxyacyl-CoA dehydrataseChr6+View
Carya illinoinensisCiPaw.07G0478004.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseChr07+View
Carya illinoinensisCiPaw.08G1400004.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseChr08-View
Citrullus lanatusClCG10G007720Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2CG_Chr10-View
Corchorus olitoriusCOL.COLO4_27351hypothetical proteinAWUE01019531.1-View
Carica papayaCpa.g.sc55.29supercontig_55+View
Chenopodium quinoaAUR62017968PAS2: Very-long-chainC_Quinoa_Scaffold_3086-View
Chenopodium quinoaAUR62003659PAS2: Very-long-chainC_Quinoa_Scaffold_2370-View
Capsella rubellaCarub.0006s08964.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratasescaffold_6-View
Cucumis sativus L.CsaV3_3G006860Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratasechr3-View
Daucus carotaDCAR_014186hypothetical proteinDCARv2_Chr4-View
Davidia involucrataDinv36926GWHABJS00000021+View
Davidia involucrataDinv13605GWHABJS00000014+View
Durio zibethinusDuzib187G1704NW_019167860.1-View
Durio zibethinusDuzib264G0362NW_019167960.1-View
Erigeron canadensisECA246G1176Conyza_canadensis_scaffold:8-View
Erigeron canadensisECA238G4457Conyza_canadensis_scaffold:6+View
Eutrema salsugineumThhalv10014620m.gK10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)scaffold_2-View
Fragaria x ananassaFAN23G0465K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Fvb1-3+View
Fragaria x ananassaFAN19G0871K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Fvb1-4+View
Fragaria x ananassaFAN26G2403K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Fvb1-2+View
Fragaria x ananassaFAN28G1749K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Fvb1-1-View
Fragaria vescaFvH4_1g196904.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseFvb1+View
Gossypium hirsutumGohir.A11G2067004.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseA11-View
Gossypium hirsutumGohir.D11G2169004.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseD11+View
Glycine maxGlyma.08G279700K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Gm08+View
Glycine maxGlyma.01G0234004.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseGm01+View
Glycine maxGlyma.18G146900K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Gm18-View
Gossypium raimondiiGorai.007G233000Chr07+View
Helianthus annuusHanXRQChr14g0442921Probable protein-tyrosine phosphatase-like, PTPLAHanXRQChr14-View
Lupinus albusLalb_Chr16g03816414.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseLalb_Chr16+View
Lupinus albusLalb_Chr05g0216341K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Lalb_Chr05-View
Lotus japonicusLj4g00191094.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratasechr4+View
Lonicera japonicaLju188A2T35GWHAAZE00000040-View
Lactuca sativaLsat_1_v5_gn_2_70580Lsat_1_v8_lg_2+View
Lactuca sativaLsat_1_v5_gn_3_628614.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseLsat_1_v8_lg_3-View
Magnolia biondiiMBI16_g27585_MAGBIOAED:0.30Chr16+View
Malus domesticaMD15G1312800Protein-tyrosine phosphatase-likeChr15+View
Malus domesticaMD01G1038800Protein-tyrosine phosphatase-likeChr01-View
Manihot esculentaManes.13G099500Chromosome13-View
Medicago truncatulaMedtr8g4711603-hydroxyacyl-CoA dehydratasechr8+View
Nelumbo nuciferaNn1g05564chr1-View
Nelumbo nuciferaNn5g29888chr5+View
Nicotiana tabacumNitab4.5_0004153g0110Protein-tyrosine phosphatase-like, PTPLANitab4.5_0004153-View
Nicotiana tabacumNitab4.5_0000902g0360Protein-tyrosine phosphatase-like, PTPLANitab4.5_0000902-View
Nicotiana tabacumNitab4.5_0001468g0120Protein-tyrosine phosphatase-like, PTPLANitab4.5_0001468-View
Prunus persicaPrupe.6G201300K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Pp06-View
Pisum sativumPsat4g119600Protein tyrosine phosphatase-like protein + PTPLAchr4LG4-View
Papaver somniferumPSO541G1644NC_039363.1-View
Populus trichocarpaPotri.007G0109004.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydrataseChr07+View
Phaseolus vulgarisPhvul.002G147400K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Chr02+View
Phaseolus vulgarisPhvul.003G289100K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2)Chr03+View
Quercus lobataQL06p0357326-View
Rosa chinensisRcHm_v2.0_Chr2g0111251RcHm_v2.0_Chr2+View
Rhododendron simsiiRhsim08G0016400chr08-View
Salix brachistaSabra07G0008400GWHAAZH00000007+View
Simmondsia chinensisSc03g0000310GWHAASQ00000003-View
Sechium eduleSed0019313LG13+View
Solanum lycopersicumSolyc11g010590.3Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (AHRD V3.3 *** A0A2G2Y571_CAPAN)SL4.0ch11-View
Solanum lycopersicumSolyc04g014370.4Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (AHRD V3.3 *** A0A2G2V069_CAPBA)SL4.0ch04-View
Schrenkiella parvulaSp6g329504.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratasech6-6+View
Solanum tuberosumPGSC0003DMG400016135Tyrosine phosphataseST4.03ch11+View
Solanum tuberosumPGSC0003DMG400023576PASTICCINO 2ST4.03ch04-View
Selenicereus undatusHund16535Scaffold_33677+View
Trochodendron aralioidesTAR381G0377group11+View
Trochodendron aralioidesTAR625G1314group4+View
Theobroma cacaoThecc.01G091200Tyrosine phosphatase-like protein PASTICCINO 2AChromosome_1+View
Tarenaya hasslerianaTHA.LOC104798725very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2NW_010960188.1+View
Tarenaya hasslerianaTHA.LOC104819292very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like isoform X1NW_010966177.1+View
Trifolium pratenseTPR.G14596Tp57577_TGAC_v2_LG7+View
Tripterygium wilfordiiTWI53G1737NC_052244.1-View
Tripterygium wilfordiiTWI74G1117NC_052234.1+View
Vigna mungoVMungo0251G2520CM024069.1+View
Vigna mungoVMungo1215G0627CM024074.1+View
Vitis viniferaGSVIVG01005931001chrUn+View