Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen05g029970RNA-binding (RRM/RBD/RNP motifs) family protein | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein .Spenn-ch05+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG1G16700LG-1+View
Acer truncatumAtru.chr3.1368chr3+View
Acer truncatumAtru.chr6.1177chr6-View
Actinidia chinensisActinidia28851Lachesis_group8-View
Arabidopsis lyrataAL6G20840scaffold_6-View
Arabidopsis lyrataAL8G42820scaffold_8-View
Avicennia marinaMSTRG.3765ScioBoG_102836_HRSCAF_103072+View
Aquilegia oxysepalaAqoxy6G00740CHR06+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.XUU5QYPTHR24012//PTHR24012:SF436//PTHR36408//PTHR36408:SF1 - FAMILY NOT NAMED // PABPN1 PROTEIN // FAMILY NOT NAMED // SUBFAMILY NOT NAMEDarahy.Tifrunner.gnm1.Arahy.13+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.M2T0M7K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)arahy.Tifrunner.gnm1.Arahy.20+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.EC9EW7K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)arahy.Tifrunner.gnm1.Arahy.10+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.A3Z183PTHR24012//PTHR24012:SF436//PTHR36408 - FAMILY NOT NAMED // PABPN1 PROTEIN // FAMILY NOT NAMEDarahy.Tifrunner.gnm1.Arahy.03+View
Arabidopsis thalianaAT5G10350RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: protein binding%2C RNA binding%2C poly(A) RNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G65260.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5-View
Arabidopsis thalianaAT5G65260RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5-View
Brassica carinataBcaC03g18321ChrC03-View
Brassica napusA06p32120A06-View
Brassica napusC03p60820C03+View
Brassica napusA02p43810A02-View
Brassica napusC02p63970C02-View
Brassica oleraceaBolC2t12463HC2-View
Brassica rapaBraA06t26140ZA06-View
Brassica rapaBraA02t09305ZA02-View
Beta vulgarisEL10Ac9g21506K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Chr9_EL10_PGA_scaffold8+View
Camellia sinensis var. sinensisCSS0049658unnamed protein product [Coffea canephora]Chr1+View
Cannabis sativaCANSAT11G2095NC_044377.1+View
Cicer arietinum L.Ca_17755_v3Ca_LG6_v3-View
Corylus avellanaHaze_24870Similar to PABN2: Polyadenylate-binding protein 2 (Arabidopsis thaliana OX%3D3702)8+View
Corylus avellanaHaze_10594Similar to PABN2: Polyadenylate-binding protein 2 (Arabidopsis thaliana OX%3D3702)9+View
Coffea canephoraCc07_g14780Polyadenylate-binding protein 2chr7+View
Citrus clementinaCiclev10026448m.gscaffold_7+View
Carpinus fangianaCfa002621Cfa01+View
Cardamine hirsutaCARHR202950Polyadenylate-binding protein family proteinChr6+View
Cardamine hirsutaCARHR279210Polyadenylate-binding protein family proteinChr8-View
Carya illinoinensisCiPaw.03G144200K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Chr03-View
Citrullus lanatusClCG01G018630Polyadenylate-binding protein family proteinCG_Chr01+View
Cucumis meloMELO3C007743.2Polyadenylate-binding 2chr08+View
Cucumis meloMELO3C017602.2Polyadenylate-binding 2chr07-View
Corchorus olitoriusCOL.COLO4_27278hypothetical proteinAWUE01019526.1-View
Carica papayaCpa.g.sc55.85supercontig_55+View
Chenopodium quinoaAUR62010156PABN3: Polyadenylate-binding protein 3C_Quinoa_Scaffold_1257+View
Chenopodium quinoaAUR62013153PABN3: Polyadenylate-binding protein 3C_Quinoa_Scaffold_1040+View
Capsella rubellaCarub.0008s2613K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)scaffold_8-View
Capsella rubellaCarub.0006s0881K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)scaffold_6-View
Cucumis sativus L.CsaV3_UNG223550Polyadenylate-binding protein 2scaffold69-View
Cucumis sativus L.CsaV3_UNG128990Polyadenylate-binding protein 2scaffold66+View
Cucumis sativus L.CsaV3_6G045300Polyadenylate-binding protein 2chr6+View
Daucus carotaDCAR_003497hypothetical proteinDCARv2_Chr1-View
Davidia involucrataDinv08843GWHABJS00000021+View
Davidia involucrataDinv13217GWHABJS00000014+View
Durio zibethinusDuzib132G0232NW_019167915.1+View
Durio zibethinusDuzib187G0072NW_019167860.1-View
Durio zibethinusDuzib264G0343NW_019167960.1-View
Eucalyptus grandisEucgr.I00520Chr09+View
Erythranthe guttataMigut.L00149scaffold_12-View
Eutrema salsugineumThhalv10004890m.gscaffold_6+View
Eutrema salsugineumThhalv10014635m.gK14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)scaffold_2-View
Fragaria x ananassaFAN19G2293K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Fvb1-4+View
Fragaria x ananassaFAN26G0703K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Fvb1-2+View
Fragaria x ananassaFAN28G0303K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Fvb1-1-View
Fragaria x ananassaFAN23G3010Fvb1-3+View
Fragaria vescaFvH4_1g20430K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Fvb1+View
Gossypium hirsutumGohir.A02G128200K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)A02-View
Gossypium hirsutumGohir.D03G039700K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)D03-View
Glycine maxGlyma.08G133900K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Gm08+View
Glycine maxGlyma.05G176400K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Gm05+View
Gossypium raimondiiGorai.003G040800Chr03-View
Hydrangea macrophyllaHma1.2p1_0019F.1_g013640Hma1.2p1_0019F.1-View
Lupinus albusLalb_Chr07g0185281K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Lalb_Chr07-View
Lotus japonicusLj4g0012561K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)chr4+View
Lotus japonicusLj4g0023301K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)chr4-View
Lonicera japonicaLj4C898G2GWHAAZE00000004-View
Lonicera japonicaLj5A235T48GWHAAZE00000005+View
Lactuca sativaLsat_1_v5_gn_5_33860Lsat_1_v8_lg_5+View
Malus domesticaMD01G1034000RNA-binding (RRM/RBD/RNP motifs) family proteinChr01-View
Manihot esculentaManes.07G034000Chromosome07-View
Manihot esculentaManes.13G095800Chromosome13-View
Manihot esculentaManes.10G105142Chromosome10+View
Manihot esculentaManes.12G131600Chromosome12+View
Medicago truncatulaMedtr8g089990polyadenylate-binding protein IIchr8+View
Nelumbo nuciferaNn1g05423chr1-View
Nelumbo nuciferaNn5g30032chr5+View
Olea europaeaOeu032405.1chr20+View
Olea europaeaOeu002166.1chr14+View
Punica granatumPGR004G2141NC_045131.1-View
Prunus persicaPrupe.6G191400K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Pp06-View
Pisum sativumPsat7g056840RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain)chr7LG7-View
Papaver somniferumPSO447G0151NW_020621936.1-View
Populus trichocarpaPotri.007G095800K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Chr07-View
Populus trichocarpaPotri.005G073200K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Chr05+View
Phaseolus vulgarisPhvul.002G261500K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)Chr02+View
Quercus lobataQL06p0484396+View
Quercus lobataQL11p02261611-View
Rosa chinensisRcHm_v2.0_Chr2g0112681RcHm_v2.0_Chr2+View
Rhododendron simsiiRhsim10G0164900chr10-View
Striga asiaticaSGA_v2.0_scaffold83G26317scaffold83+View
Striga asiaticaSGA_v2.0_scaffold335G49110scaffold335+View
Striga asiaticaSGA_v2.0_scaffold14G07133scaffold14-View
Salvia bowleyanaSalBow5G3912GWHASIU00000003-View
Salix brachistaSabra07G0078900GWHAAZH00000007-View
Salix brachistaSabra05G0059800GWHAAZH00000005+View
Simmondsia chinensisSc16g0000190GWHAASQ00000016+View
Simmondsia chinensisSc03g0000080GWHAASQ00000003+View
Sechium eduleSed0023811LG10+View
Sechium eduleSed0017052LG13-View
Solanum lycopersicumSolyc11g009090.2Polyadenylate-binding protein (AHRD V3.3 *** G5DWR4_SILLA)SL4.0ch11-View
Schrenkiella parvulaSp2g28360K14396 - polyadenylate-binding protein 2 (PABPN1, PABP2)ch2-4-View
Solanum tuberosumPGSC0003DMG400016158Poly-A binding proteinST4.03ch11+View
Solanum tuberosumPGSC0003DMG400016798Poly-A binding proteinST4.03ch05+View
Selenicereus undatusHund13597Scaffold_33679-View
Trochodendron aralioidesTAR376G0353group14-View
Trochodendron aralioidesTAR381G0760group11+View
Theobroma cacaoThecc.01G097500RNA-binding (RRM/RBD/RNP motifs) family proteinChromosome_1+View
Theobroma cacaoThecc.02G134700RNA-binding family proteinChromosome_2+View
Tarenaya hasslerianaTHA.LOC104798864polyadenylate-binding protein 2 isoform X1NW_010960188.1+View
Tarenaya hasslerianaTHA.LOC104801673polyadenylate-binding protein 3NW_010969839.1-View
Trifolium pratenseTPR.G6252Tp57577_TGAC_v2_LG3+View
Tripterygium wilfordiiTWI59G1039NC_052248.1-View
Tripterygium wilfordiiTWI74G0657NC_052234.1+View
Tripterygium wilfordiiTWI77G0568NC_052236.1+View
Vaccinium macrocarponvmacro12967Similar to PABN3: Polyadenylate-binding protein 3 (Arabidopsis thaliana OX%3D3702)chr11_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo0251G1244CM024069.1+View