Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen05g033590VPS60.2 | CONTAINS InterPro DOMAIN/s: Snf7 | BEST Arabidopsis thaliana protein match is: SNF7 family protein ., Snf7Spenn-ch05-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatumAtru.chr12.1074chr12-View
Actinidia chinensisActinidia34733Lachesis_group6-View
Actinidia chinensisActinidia31111Lachesis_group17+View
Arabidopsis lyrataAL3G22110scaffold_3-View
Avicennia marinaMSTRG.9034ScioBoG_11560_HRSCAF_11609-View
Amaranthus hybridusAh.04g162540Vacuolar protein sorting-associated protein 60.2AmaHy_arrow1_Scaffold_4+View
Aquilegia oxysepalaAqoxy1G00661CHR01-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.3L4KICK12198 - charged multivesicular body protein 5 (CHMP5, VPS60)arahy.Tifrunner.gnm1.Arahy.19-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.V7K45WK12198 - charged multivesicular body protein 5 (CHMP5, VPS60)arahy.Tifrunner.gnm1.Arahy.09-View
Arabidopsis thalianaAT3G10640SNF7 family protein VPS60.1%3B CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024)%3B BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1)%3B Has 1147 Blast hits to 1145 proteins in 230 species: Archae - 3%3B Bacteria - 8%3B Metazoa - 447%3B Fungi - 307%3B Plants - 230%3B Viruses - 0%3B Other Eukaryotes - 152 (source: NCBI BLink).Chr3-View
Amborella trichopodaATR0772G188AmTr_v1.0_scaffold00030+View
Brassica napusC09p71970C09+View
Beta vulgarisEL10Ac4g08721K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Chr4_EL10_PGA_scaffold1+View
Camellia sinensis var. sinensisCSS0006463SNF7 family protein [Populus trichocarpa]Chr1+View
Camellia sinensis var. sinensisCSS0036043SNF7 family protein [Populus trichocarpa]Contig40-View
Capsicum annuumCAN.G143.38PGAv.1.6.scaffold143+View
Capsicum annuumCAN.G1433.3PGAv.1.6.scaffold1433-View
Cicer arietinum L.Ca_10428_v3Ca_LG4_v3-View
Corylus avellanaHaze_03463Similar to VPS60-1: Vacuolar protein sorting-associated protein 60.1 (Arabidopsis thaliana OX%3D3702)1-View
Coffea canephoraCc02_g09370Putative Charged multivesicular body protein 5chr2-View
Citrus clementinaCiclev10016516m.gscaffold_2+View
Ceratophyllum demersumCDE08G05316+View
Carpinus fangianaCfa010523Cfa04-View
Cardamine hirsutaCARHR085220Charged multivesicular body protein 5Chr3-View
Carya illinoinensisCiPaw.13G043700K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Chr13+View
Carya illinoinensisCiPaw.14G034900K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Chr14+View
Citrullus lanatusClCG05G021950Charged multivesicular body protein, putativeCG_Chr05+View
Cucumis meloMELO3C012333.2charged multivesicular body protein 5chr10+View
Chenopodium quinoaAUR62034167Chmp5: Charged multivesicular body protein 5C_Quinoa_Scaffold_2123-View
Capsella rubellaCarub.0003s0987K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)scaffold_3-View
Davidia involucrataDinv08584GWHABJS00000004-View
Durio zibethinusDuzib106G1693NW_019168492.1-View
Erigeron canadensisECA238G1602Conyza_canadensis_scaffold:6-View
Erigeron canadensisECA232G4887Conyza_canadensis_scaffold:2+View
Eucalyptus grandisEucgr.G02678Chr07-View
Eucalyptus grandisEucgr.J00289Chr10+View
Erythranthe guttataMigut.F00845scaffold_6-View
Erythranthe guttataMigut.F01582scaffold_6-View
Eutrema salsugineumThhalv10021438m.gK12198 - charged multivesicular body protein 5 (CHMP5, VPS60)scaffold_13+View
Fragaria x ananassaFAN01G0006K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Fvb7-4+View
Fragaria x ananassaFAN06G0541PTHR22761//PTHR22761:SF17 - SNF7 - RELATED // SUBFAMILY NOT NAMEDFvb7-2-View
Fragaria vescaFvH4_7g05380K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Fvb7+View
Glycine maxGlyma.10G195600K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Gm10-View
Helianthus annuusHanXRQChr02g0053561Putative snf7 familyHanXRQChr02+View
Lupinus albusLalb_Chr02g0150941K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Lalb_Chr02-View
Lupinus albusLalb_Chr21g0312801PTHR22761//PTHR22761:SF17 - SNF7 - RELATED // SUBFAMILY NOT NAMEDLalb_Chr21-View
Lotus japonicusLj5g0005985K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)chr5+View
Lonicera japonicaLj2A35T41GWHAAZE00000002+View
Lonicera japonicaLj3C923T8GWHAAZE00000003-View
Lactuca sativaLsat_1_v5_gn_2_105880Lsat_1_v8_lg_2+View
Lactuca sativaLsat_1_v5_gn_0_21121Lsat_1_v8_lg_0-View
Medicago truncatulaMedtr1g090490charged multivesicular body proteinchr1-View
Nelumbo nuciferaNn2g14302chr2+View
Nelumbo nuciferaNn6g34695chr6-View
Nicotiana tabacumNitab4.5_0000687g0220Snf7Nitab4.5_0000687-View
Nicotiana tabacumNitab4.5_0001781g0200Snf7Nitab4.5_0001781-View
Olea europaeaOeu009249.1scaffold1344+View
Olea europaeaOeu033275.1scaffold279-View
Petunia axillarisPeaxi162Scf00519g00041Charged multivesicular body protein 5Peaxi162Scf00519-View
Petunia axillarisPeaxi162Scf00120g01529Charged multivesicular body protein 5Peaxi162Scf00120-View
Punica granatumPGR044G1056NC_045134.1-View
Punica granatumPGR142G1001NC_045128.1-View
Pisum sativumPsat6g171920Snf7chr6LG2-View
Populus trichocarpaPotri.008G018300K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Chr08+View
Populus trichocarpaPotri.010G242700K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)Chr10+View
Quercus lobataQL04p0479284+View
Rosa chinensisRcHm_v2.0_Chr1g0331931RcHm_v2.0_Chr1-View
Rhododendron simsiiRhsim03G0096100chr03-View
Rhododendron simsiiRhsim09G0140900chr09-View
Salvia bowleyanaSalBow6G4129GWHASIU00000002+View
Salvia bowleyanaSalBow3G3414GWHASIU00000006-View
Salix brachistaSabra08G0011900GWHAAZH00000008+View
Salix brachistaSabra10G0189700GWHAAZH00000010+View
Simmondsia chinensisSc09g0005090GWHAASQ00000009-View
Sechium eduleSed0009816LG07+View
Sechium eduleSed0007836LG06-View
Solanum lycopersicumSolyc05g055170.3charged multivesicular body protein 5-like (AHRD V3.3 *** A0A2I4G8C5_9ROSI)SL4.0ch05-View
Solanum lycopersicumSolyc11g006500.2charged multivesicular body protein 5-like (AHRD V3.3 *** A0A2I4G8C5_9ROSI)SL4.0ch11-View
Schrenkiella parvulaSp3g08950K12198 - charged multivesicular body protein 5 (CHMP5, VPS60)ch3-1-View
Solanum tuberosumPGSC0003DMG400023399Charged multivesicular body proteinST4.03ch05-View
Solanum tuberosumPGSC0003DMG402001984Charged multivesicular body proteinST4.03ch11+View
Selenicereus undatusHund22266Scaffold_33680-View
Selenicereus undatusHund06807Scaffold_33676+View
Trochodendron aralioidesTAR623G0671group7-View
Trochodendron aralioidesTAR369G0320group18+View
Theobroma cacaoThecc.10G117200SNF7 family proteinChromosome_10+View
Tarenaya hasslerianaTHA.LOC104816475charged multivesicular body protein 5-likeNW_010965775.1-View
Tripterygium wilfordiiTWI38G0789NC_052252.1-View
Tripterygium wilfordiiTWI63G0716NC_052240.1-View
Vaccinium macrocarponvmacro07271Similar to VPS60-2: Vacuolar protein sorting-associated protein 60.2 (Arabidopsis thaliana OX%3D3702)chr2_Vaccinium_macrocarpon_Stevens_v1-View
Vaccinium macrocarponvmacro10323Similar to VPS60-1: Vacuolar protein sorting-associated protein 60.1 (Arabidopsis thaliana OX%3D3702)chr8_Vaccinium_macrocarpon_Stevens_v1+View
Vigna mungoVMungo0720G1868CM024071.1-View
Vitis viniferaGSVIVG01034626001chr13+View