Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen04g026970ARM repeat superfamily protein | FUNCTIONS IN: ubiquitin-protein ligase activity, binding | INVOLVED IN: response to chitin | LOCATED IN: ubiquitin ligase complex | EXPRESSED IN: 10 plant structures | EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, M germinated pollen stage, 4 anthesis | CONTAINS InterPro DOMAIN/s: U box domain , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: CYS, MET, PRO, and GLY protein 2Spenn-ch04-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatumAtru.chr4.777chr4+View
Actinidia chinensisActinidia06644Lachesis_group16-View
Arabidopsis lyrataAL6G20200scaffold_6-View
Avicennia marinaMSTRG.23433ScioBoG_3895_HRSCAF_3912+View
Amaranthus hybridusAh.03g146690U-box domain-containing protein 27 (EC 2.3.2.27) (Plant U-box protein 27) (RING-type E3 ubiquitin transferase PUB27)AmaHy_arrow1_Scaffold_3+View
Arabidopsis thalianaAT5G09800ARM repeat superfamily protein ARM repeat superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C binding%3B INVOLVED IN: response to chitin%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C LP.06 six leaves visible%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: CYS%2C MET%2C PRO%2C and GLY protein 2 (TAIR:AT5G64660.1)%3B Has 1911 Blast hits to 1878 proteins in 97 species: Archae - 0%3B Bacteria - 16%3B Metazoa - 84%3B Fungi - 4%3B Plants - 1697%3B Viruses - 0%3B Other Eukaryotes - 110 (source: NCBI BLink).Chr5-View
Brassica carinataBcaC01g02696ChrC01-View
Brassica carinataBcaB02g09809ChrB02-View
Brassica rapaBraA06t26081ZA06-View
Cicer arietinum L.Ca_17651_v3Ca_LG6_v3-View
Cicer arietinum L.Ca_16924_v3Ca_LG5_v3+View
Corylus avellanaHaze_25133Similar to PUB28: U-box domain-containing protein 28 (Arabidopsis thaliana OX%3D3702)8-View
Corylus avellanaHaze_25256Similar to PUB25: U-box domain-containing protein 25 (Arabidopsis thaliana OX%3D3702)8-View
Coffea canephoraCc07_g17800Putative U-box domain-containing protein 27chr7+View
Citrus clementinaCiclev10025637m.gscaffold_7-View
Ceratophyllum demersumCDE08G15626+View
Carpinus fangianaCfa002836Cfa01-View
Cardamine hirsutaCARHR278630U-box domain-containing proteinChr8-View
Carya illinoinensisCiPaw.15G018900PTHR22849//PTHR22849:SF12 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDChr15-View
Carya illinoinensisCiPaw.03G127800PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDChr03+View
Carya illinoinensisCiPaw.04G085900PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDChr04+View
Citrullus lanatusClCG01G015580U-box domain-containing proteinCG_Chr01-View
Cucumis meloMELO3C008040.2RING-type E3 ubiquitin transferasechr08+View
Carica papayaCpa.g.sc42.110supercontig_42+View
Chenopodium quinoaAUR62017923PUB27: U-box domain-containing protein 27C_Quinoa_Scaffold_3086-View
Chenopodium quinoaAUR62003612PUB27: U-box domain-containing protein 27C_Quinoa_Scaffold_2370-View
Capsella rubellaCarub.0006s0821PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDscaffold_6-View
Cucumis sativus L.CsaV3_6G041810RING-type E3 ubiquitin transferasechr6-View
Davidia involucrataDinv24314GWHABJS00000012+View
Davidia involucrataDinv11330GWHABJS00000014+View
Davidia involucrataDinv25838GWHABJS00000011-View
Durio zibethinusDuzib264G1027NW_019167960.1+View
Durio zibethinusDuzib116G0041NW_019167949.1-View
Durio zibethinusDuzib147G0687NW_019168470.1-View
Durio zibethinusDuzib187G1115NW_019167860.1-View
Eucalyptus grandisEucgr.I00230Chr09-View
Fragaria x ananassaFAN19G1521PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDFvb1-4+View
Fragaria x ananassaFAN26G2567PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDFvb1-2+View
Fragaria x ananassaFAN23G0093PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDFvb1-3+View
Fragaria vescaFvH4_1g24000PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDFvb1+View
Gossypium hirsutumGohir.D11G060000PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDD11+View
Glycine maxGlyma.06G151200PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDGm06+View
Glycine maxGlyma.08G147200PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDGm08+View
Glycine maxGlyma.05G189600PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDGm05+View
Gossypium raimondiiGorai.011G115700Chr11+View
Lupinus albusLalb_Chr12g0203261PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDLalb_Chr12-View
Malus domesticaMD01G1010900CYSChr01+View
Manihot esculentaManes.12G152200Chromosome12+View
Manihot esculentaManes.02G176900Chromosome02-View
Manihot esculentaManes.13G071800Chromosome13-View
Medicago truncatulaMedtr3g095730plant U-box proteinchr3+View
Medicago truncatulaMedtr8g092870plant U-box proteinchr8+View
Olea europaeaOeu047675.1chr18+View
Petunia axillarisPeaxi162Scf00012g00231U-box domain-containing protein 27Peaxi162Scf00012-View
Punica granatumPGR042G3401NC_045130.1+View
Punica granatumPGR102G1022NC_045129.1+View
Populus trichocarpaPotri.002G070500PTHR22849//PTHR22849:SF52 - WDSAM1 PROTEIN // E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATEDChr02+View
Populus trichocarpaPotri.007G110600PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDChr07-View
Populus trichocarpaPotri.005G057500PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDChr05+View
Phaseolus vulgarisPhvul.002G270300PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDChr02+View
Phaseolus vulgarisPhvul.009G148200PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMEDChr09+View
Quercus lobataQL06p0297666-View
Quercus lobataQL02p024486CM012294-View
Rosa chinensisRcHm_v2.0_Chr2g0120131RcHm_v2.0_Chr2+View
Rhododendron simsiiRhsim10G0138500chr10-View
Salix brachistaSabra07G0090500GWHAAZH00000007-View
Salix brachistaSabra05G0049400GWHAAZH00000005+View
Sechium eduleSed0008178LG10+View
Solanum lycopersicumSolyc11g005700.1RING-type E3 ubiquitin transferase (AHRD V3.3 *** A0A2G2VFF2_CAPBA)SL4.0ch11+View
Solanum tuberosumPGSC0003DMG400025560Photoperiod-responseST4.03ch11-View
Trochodendron aralioidesTAR628G1731group5-View
Trochodendron aralioidesTAR381G0450group11+View
Theobroma cacaoThecc.01G124800CYSChromosome_1+View
Theobroma cacaoThecc.01G133700Chromosome_1-View
Trifolium pratenseTPR.G37415Tp57577_TGAC_v2_LG3+View
Tripterygium wilfordiiTWI79G1625NC_052238.1-View
Vigna mungoVMungo0251G2475CM024069.1+View
Vitis viniferaGSVIVG01026542001chr4+View