Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc06g005190.4RNA binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** Q9M1E4_ARATH)SL4.0ch06+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG1G12340LG-1+View
Aethionema arabicumAa31LG4G14820LG-4-View
Acer truncatumAtru.chr3.3737chr3+View
Acer truncatumAtru.chr8.2548chr8-View
Actinidia chinensisActinidia00815Lachesis_group15-View
Actinidia chinensisActinidia37283Lachesis_group24-View
Actinidia chinensisActinidia07100Lachesis_group13-View
Arabidopsis lyrataAL8G36780scaffold_8+View
Arabidopsis lyrataAL4G23040scaffold_4+View
Aquilegia oxysepalaAqoxy4G03171CHR04-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.BB6RTXK10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)arahy.Tifrunner.gnm1.Arahy.16+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.L7TZBMK10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)arahy.Tifrunner.gnm1.Arahy.13+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.XKSF6XK10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)arahy.Tifrunner.gnm1.Arahy.03+View
Arabidopsis thalianaAT3G45630RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1)%3B Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0%3B Bacteria - 612%3B Metazoa - 421%3B Fungi - 369%3B Plants - 161%3B Viruses - 3%3B Other Eukaryotes - 675 (source: NCBI BLink).Chr3-View
Arabidopsis thalianaAT2G28540RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 925 Blast hits to 706 proteins in 218 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 245%3B Fungi - 180%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 333 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 940 Blast hits to 717 proteins in 219 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 247%3B Fungi - 180%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 344 (source: NCBI BLink).Chr2+View
Arabidopsis thalianaAT5G60170RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 1342 Blast hits to 828 proteins in 247 species: Archae - 0%3B Bacteria - 318%3B Metazoa - 242%3B Fungi - 228%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 402 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1).Chr5+View
Brassica carinataBcaC01g01962ChrC01+View
Brassica carinataBcaB05g22626ChrB05+View
Brassica carinataBcaC02g08160ChrC02-View
Brassica carinataBcaB02g10169ChrB02+View
Brassica carinataBcaB06g28227ChrB06+View
Brassica napusA06p21320A06+View
Brassica napusC04p57760C04+View
Brassica oleraceaBolC4t23775HC4-View
Brassica oleraceaBolC3t19266HC3-View
Brassica rapaBraA03t10447ZA03-View
Brassica rapaBraA06t25220ZA06+View
Beta vulgarisEL10Ac9g22397K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Chr9_EL10_PGA_scaffold8-View
Camellia sinensis var. sinensisCSS0003168unnamed protein product [Coffea canephora]Chr1+View
Camellia sinensis var. sinensisCSS0023988PREDICTED: uncharacterized protein LOC100267264 isoform X1 [Vitis vinifera]Chr11+View
Capsicum annuumCAN.G84.35PGAv.1.6.scaffold84-View
Cannabis sativaCANSAT54G1232NC_044375.1-View
Cicer arietinum L.Ca_19232_v3Ca_LG6_v3-View
Cicer arietinum L.Ca_01445_v3Ca_LG1_v3+View
Corylus avellanaHaze_23952Protein of unknown function6+View
Corylus avellanaHaze_20663Protein of unknown function10+View
Coffea canephoraCc01_g11820Putative RNA binding (RRM/RBD/RNP motifs) family proteinchr1+View
Citrus clementinaCiclev10027731m.gscaffold_8+View
Citrus clementinaCiclev10010976m.gscaffold_6+View
Ceratophyllum demersumCDE09G07977+View
Ceratophyllum demersumCDE02G26221-View
Carpinus fangianaCfa017499Cfa07-View
Cardamine hirsutaCARHR121550RNA binding (RRM/RBD/RNP motifs) family proteinChr4+View
Cardamine hirsutaCARHR273820CCR4-NOT transcription complex subunit 4Chr8+View
Carya illinoinensisCiPaw.13G104800K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Chr13-View
Citrullus lanatusClCG02G020770CCR4-NOT transcription complex subunitCG_Chr02+View
Carica papayaCpa.g.sc139.44supercontig_139-View
Chenopodium quinoaAUR62025044MOT2: General negative regulator of transcription subunit 4C_Quinoa_Scaffold_4082+View
Capsella rubellaCarub.0005s1148K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)scaffold_5-View
Capsella rubellaCarub.0008s2090K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)scaffold_8+View
Capsella rubellaCarub.0004s0951K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)scaffold_4+View
Cucumis sativus L.CsaV3_6G021850RNA binding (RRM/RBD/RNP motifs) family proteinchr6-View
Daucus carotaDCAR_015568hypothetical proteinDCARv2_Chr4-View
Daucus carotaDCAR_018847hypothetical proteinDCARv2_Chr5+View
Daucus carotaDCAR_005287hypothetical proteinDCARv2_Chr2+View
Davidia involucrataDinv06354GWHABJS00000007+View
Davidia involucrataDinv31369GWHABJS00000004+View
Davidia involucrataDinv32813GWHABJS00000010+View
Davidia involucrataDinv11816GWHABJS00000009-View
Davidia involucrataDinv35704GWHABJS00000015-View
Durio zibethinusDuzib170G1143NW_019167871.1-View
Durio zibethinusDuzib150G1164NW_019167882.1+View
Erigeron canadensisECA238G1845Conyza_canadensis_scaffold:6-View
Eucalyptus grandisEucgr.B02454Chr02-View
Eucalyptus grandisEucgr.J02120Chr10-View
Erythranthe guttataMigut.D02169scaffold_4-View
Erythranthe guttataMigut.N02636scaffold_14+View
Eutrema salsugineumThhalv10016186m.gK10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)scaffold_10+View
Eutrema salsugineumThhalv10012563m.gK10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)scaffold_2-View
Fragaria x ananassaFAN16G2581K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Fvb3-3-View
Fragaria x ananassaFAN02G2428PF00076//PF14570 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RING/Ubox like zinc-binding domain (zf-RING_4)Fvb6-4-View
Fragaria x ananassaFAN09G4680K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Fvb6-2+View
Fragaria x ananassaFAN14G1357K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Fvb6-1-View
Fragaria x ananassaFAN21G0873K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Fvb3-2+View
Fragaria x ananassaFAN11G3580K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Fvb3-4-View
Fragaria x ananassaFAN05G0878K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Fvb6-3+View
Fragaria x ananassaFAN25G2198PF13893//PF14570 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) // RING/Ubox like zinc-binding domain (zf-RING_4)Fvb3-1+View
Fragaria vescaFvH4_3g33920K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Fvb3+View
Fragaria vescaFvH4_6g15190K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Fvb6-View
Gossypium hirsutumGohir.D08G008800K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)D08+View
Gossypium hirsutumGohir.A07G093300PF00076//PF13893//PF14570 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) // RING/Ubox like zinc-binding domain (zf-RING_4)A07+View
Gossypium hirsutumGohir.A05G100500PTHR12603:SF3 - RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINA05-View
Gossypium hirsutumGohir.A08G000088PTHR12603:SF3 - RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINA08+View
Gossypium hirsutumGohir.D07G097900K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)D07+View
Gossypium hirsutumGohir.D05G100300PTHR12603:SF3 - RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIND05-View
Glycine maxGlyma.15G044500K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Gm15-View
Glycine maxGlyma.13G329600K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Gm13+View
Glycine maxGlyma.12G073200K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Gm12+View
Glycine maxGlyma.10G048700K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Gm10-View
Glycine maxGlyma.11G150034K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Gm11-View
Glycine maxGlyma.13G136500K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Gm13-View
Gossypium raimondiiGorai.004G002000Chr04+View
Gossypium raimondiiGorai.001G105300Chr01+View
Gossypium raimondiiGorai.009G104400Chr09-View
Lupinus albusLalb_Chr19g0137531K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Lalb_Chr19+View
Lupinus albusLalb_Chr01g0004061K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Lalb_Chr01-View
Lupinus albusLalb_Chr14g0374841K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Lalb_Chr14+View
Lupinus albusLalb_Chr03g0027031K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Lalb_Chr03-View
Lotus japonicusLj3g0016662K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)chr3-View
Lonicera japonicaLj1C181T4GWHAAZE00000001-View
Lonicera japonicaLj2C1042G4GWHAAZE00000002+View
Lactuca sativaLsat_1_v5_gn_5_164641Lsat_1_v8_lg_5+View
Lactuca sativaLsat_1_v5_gn_9_20441Lsat_1_v8_lg_9+View
Malus domesticaMD11G1121300RNA binding (RRM/RBD/RNP motifs) family proteinChr11-View
Malus domesticaMD03G1108000RNA binding (RRM/RBD/RNP motifs) family proteinChr03-View
Manihot esculentaManes.04G026900Chromosome04+View
Manihot esculentaManes.11G139600Chromosome11-View
Medicago truncatulaMedtr4g061180RNA-binding (RRM/RBD/RNP motif) family proteinchr4+View
Medicago truncatulaMedtr2g093100RNA-binding (RRM/RBD/RNP motif) family proteinchr2-View
Nelumbo nuciferaNn2g10631chr2-View
Nelumbo nuciferaNn2g12973chr2-View
Olea europaeaOeu058500.1chr22+View
Olea europaeaOeu062274.1chr13+View
Petunia axillarisPeaxi162Scf00389g00212RNA binding (RRM/RBD/RNP motifs) family proteinPeaxi162Scf00389-View
Punica granatumPGR119G2367NC_045132.1+View
Punica granatumPGR102G3367NC_045129.1-View
Prunus persicaPrupe.6G091300Pp06-View
Prunus persicaPrupe.6G242300K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Pp06+View
Pisum sativumPsat5g276760RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain)chr5LG3-View
Pisum sativumPsat7g221920RING/Ubox like zinc-binding domainchr7LG7+View
Papaver somniferumPSO384G1408NC_039368.1-View
Populus trichocarpaPotri.016G084700K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Chr16-View
Populus trichocarpaPotri.006G132300K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)Chr06+View
Phaseolus vulgarisPhvul.011G071200Chr11-View
Phaseolus vulgarisPhvul.L000154scaffold_30+View
Quercus lobataQL01p0359051-View
Quercus lobataQL07p0454167+View
Rosa chinensisRcHm_v2.0_Chr5g0061481RcHm_v2.0_Chr5+View
Rosa chinensisRcHm_v2.0_Chr3g0468541RcHm_v2.0_Chr3-View
Rhododendron simsiiRhsim01G0221800chr01+View
Rhododendron simsiiRhsimUnG0138900ctg341+View
Rhododendron simsiiRhsim13G0090500chr13-View
Striga asiaticaSGA_v2.0_scaffold61G21188scaffold61+View
Salvia bowleyanaSalBow3G2001GWHASIU00000006-View
Salvia bowleyanaSalBow3G0541GWHASIU00000006+View
Salix brachistaSabra16G0091500GWHAAZH00000016-View
Simmondsia chinensisSc21g0000150GWHAASQ00000021+View
Schrenkiella parvulaSp5g15830K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)ch5-1+View
Schrenkiella parvulaSp4g11360K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2)ch4-6+View
Solanum pennelliiSopen11g030240RNA binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Zinc finger, RING-type , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family proteinSpenn-ch11+View
Solanum tuberosumPGSC0003DMG400030059RNA recognition motif-containing proteinST4.03ch06-View
Trochodendron aralioidesTAR369G0440group18-View
Trochodendron aralioidesTAR633G1817group2-View
Trochodendron aralioidesTAR623G1444group7+View
Trochodendron aralioidesTAR636G3427group1+View
Theobroma cacaoThecc.09G336200RNA binding family proteinChromosome_9-View
Tarenaya hasslerianaTHA.LOC104810834uncharacterized protein LOC104810834 isoform X1NW_010965304.1+View
Trifolium pratenseTPR.G11610Tp57577_TGAC_v2_LG7-View
Trifolium pratenseTPR.G2975Tp57577_TGAC_v2_LG4+View
Tripterygium wilfordiiTWI79G1131NC_052238.1-View
Tripterygium wilfordiiTWI75G0843NC_052253.1-View
Vaccinium macrocarponvmacro14484Similar to CNOT4: CCR4-NOT transcription complex subunit 4 (Homo sapiens OX%3D9606)chr7_Vaccinium_macrocarpon_Stevens_v1+View
Vaccinium macrocarponvmacro03146Similar to CNOT4: CCR4-NOT transcription complex subunit 4 (Homo sapiens OX%3D9606)chr9_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo1080G1499CM024079.1-View
Vigna mungoVMungo1127G1737CM024076.1-View
Vitis viniferaGSVIVG01025102001chr6+View