Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc11g007920.1Histone H2B (AHRD V3.3 *-* A0A200PZ88_9MAGN)SL4.0ch11-View
Solyc06g074750.1Histone H2B (AHRD V3.3 *-* A0A200R5C1_9MAGN)SL4.0ch06+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31sc23G50sc-23-View
Aethionema arabicumAa31LG1G12840LG-1+View
Acer truncatumAtru.chr8.1724chr8-View
Acer truncatumAtru.chr3.3829chr3+View
Arabidopsis lyrataAL6G34020scaffold_6-View
Arabidopsis lyrataAL5G24690scaffold_5-View
Avicennia marinaMSTRG.18706ScioBoG_22153_HRSCAF_22259+View
Avicennia marinaMSTRG.17757ScioBoG_19834_HRSCAF_19925-View
Amaranthus hybridusAh.08g211410AmaHy_arrow1_Scaffold_8-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.XCYW33KOG1744 - Histone H2Barahy.Tifrunner.gnm1.Arahy.13-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.LK8GY6K11252 - histone H2B (H2B)arahy.Tifrunner.gnm1.Arahy.18+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.PWN22YK11252 - histone H2B (H2B)arahy.Tifrunner.gnm1.Arahy.03-View
Arabidopsis thalianaAT5G22880histone B2 Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta%2C and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. histone B2 (HTB2)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleolus%2C nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5-View
Arabidopsis thalianaAT3G45980Histone superfamily protein Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta%2C and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition. HTB9%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G07790.1)%3B Has 3616 Blast hits to 3469 proteins in 351 species: Archae - 0%3B Bacteria - 64%3B Metazoa - 2275%3B Fungi - 213%3B Plants - 487%3B Viruses - 0%3B Other Eukaryotes - 577 (source: NCBI BLink).Chr3-View
Arabidopsis thalianaAT2G37470Histone superfamily protein Histone superfamily protein%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G53650.1)%3B Has 3293 Blast hits to 3281 proteins in 346 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2242%3B Fungi - 218%3B Plants - 466%3B Viruses - 0%3B Other Eukaryotes - 367 (source: NCBI BLink).Chr2+View
Brassica carinataBcaB08g36399ChrB08+View
Brassica carinataBcaC04g19607ChrC04-View
Brassica napusA10p18150A10+View
Brassica napusC03p12540C03-View
Brassica napusC09p53760C09+View
Brassica oleraceaBolC9t58251HC9+View
Brassica oleraceaBolC3t13726HC3-View
Brassica rapaBraA10t43890ZA10+View
Beta vulgarisEL10Ac7g15970K11252 - histone H2B (H2B)Chr7_EL10_PGA_scaffold5+View
Camellia sinensis var. sinensisCSS0039771hypothetical protein PRUPE_ppa012932mg [Prunus persica]Chr11+View
Camellia sinensis var. sinensisCSS0027212histone H2B.2 [Camellia sinensis]Chr1-View
Capsicum annuumCAN.G1432.5PGAv.1.6.scaffold1432-View
Capsicum annuumCAN.G394.26PGAv.1.6.scaffold394+View
Cicer arietinum L.Ca_01699_v3Ca_LG1_v3+View
Corylus avellanaHaze_24046Similar to Probable histone H2B.1 (Medicago truncatula OX%3D3880)6+View
Corylus avellanaHaze_23522Similar to At1g08170: Histone H2B.2 (Arabidopsis thaliana OX%3D3702)6+View
Cardamine hirsutaCARHR154340Histone H2BChr5-View
Cardamine hirsutaCARHR190650Histone H2BChr6+View
Carya illinoinensisCiPaw.13G098000KOG1744 - Histone H2BChr13-View
Carica papayaCpa.g.sc190.16supercontig_190-View
Chenopodium quinoaAUR62001825Probable histone H2B.1C_Quinoa_Scaffold_2716-View
Chenopodium quinoaAUR62009612HIS2B: Histone H2BC_Quinoa_Scaffold_2493-View
Capsella rubellaCarub.0005s1183K11252 - histone H2B (H2B)scaffold_5-View
Capsella rubellaCarub.0006s2066K11252 - histone H2B (H2B)scaffold_6-View
Cucumis sativus L.CsaV3_1G014090Histone H2Bchr1-View
Daucus carotaDCAR_015504hypothetical proteinDCARv2_Chr4+View
Daucus carotaDCAR_006129hypothetical proteinDCARv2_Chr2+View
Daucus carotaDCAR_018759hypothetical proteinDCARv2_Chr5-View
Davidia involucrataDinv06154GWHABJS00000007+View
Davidia involucrataDinv36359GWHABJS00000009+View
Davidia involucrataDinv35638GWHABJS00000015-View
Durio zibethinusDuzib170G0746NW_019167871.1-View
Durio zibethinusDuzib093G2084NW_019167937.1+View
Durio zibethinusDuzib168G2205NW_019168159.1-View
Durio zibethinusDuzib170G0929NW_019167871.1-View
Durio zibethinusDuzib150G0640NW_019167882.1+View
Eucalyptus grandisEucgr.J00390Chr10-View
Eucalyptus grandisEucgr.B03925Chr02-View
Erythranthe guttataMigut.D02296scaffold_4+View
Eutrema salsugineumThhalv10017408m.gK11252 - histone H2B (H2B)scaffold_10+View
Eutrema salsugineumThhalv10002705m.gK11252 - histone H2B (H2B)scaffold_4+View
Eutrema salsugineumThhalv10014927m.gK11252 - histone H2B (H2B)scaffold_2-View
Eutrema salsugineumThhalv10014958m.gK11252 - histone H2B (H2B)scaffold_2-View
Fragaria x ananassaFAN02G4254K11252 - histone H2B (H2B)Fvb6-4-View
Fragaria x ananassaFAN14G1419K11252 - histone H2B (H2B)Fvb6-1+View
Fragaria x ananassaFAN16G2803K11252 - histone H2B (H2B)Fvb3-3+View
Fragaria x ananassaFAN21G2361K11252 - histone H2B (H2B)Fvb3-2+View
Gossypium hirsutumGohir.D03G128700K11252 - histone H2B (H2B)D03-View
Gossypium hirsutumGohir.A05G086500K11252 - histone H2B (H2B)A05-View
Gossypium hirsutumGohir.D05G087800K11252 - histone H2B (H2B)D05-View
Gossypium hirsutumGohir.A03G039100K11252 - histone H2B (H2B)A03+View
Glycine maxGlyma.13G321600K11252 - histone H2B (H2B)Gm13-View
Glycine maxGlyma.12G179100K11252 - histone H2B (H2B)Gm12+View
Glycine maxGlyma.12G065100K11252 - histone H2B (H2B)Gm12-View
Glycine maxGlyma.10G198500K11252 - histone H2B (H2B)Gm10+View
Glycine maxGlyma.11G141600K11252 - histone H2B (H2B)Gm11-View
Gossypium raimondiiGorai.003G135400Chr03-View
Gossypium raimondiiGorai.009G089900Chr09-View
Lupinus albusLalb_Chr19g0136891K11252 - histone H2B (H2B)Lalb_Chr19-View
Lupinus albusLalb_Chr24g0394981K11252 - histone H2B (H2B)Lalb_Chr24-View
Lotus japonicusLj3g0020202K11252 - histone H2B (H2B)chr3-View
Lotus japonicusLj3g0019527K11252 - histone H2B (H2B)chr3-View
Lonicera japonicaLj1P157T37GWHAAZE00000001-View
Lonicera japonicaLj1P213T21GWHAAZE00000001+View
Lactuca sativaLsat_1_v5_gn_1_64840K11252 - histone H2B (H2B)Lsat_1_v8_lg_1-View
Malus domesticaMD03G1128400Histone superfamily proteinChr03+View
Malus domesticaMD04G1120800Histone superfamily proteinChr04+View
Malus domesticaMD03G1097700Histone superfamily proteinChr03-View
Malus domesticaMD11G1149100Histone superfamily proteinChr11+View
Manihot esculentaManes.10G052900Chromosome10+View
Manihot esculentaManes.04G012600Chromosome04-View
Manihot esculentaManes.11G152700Chromosome11+View
Manihot esculentaManes.11G133700Chromosome11-View
Medicago truncatulaMedtr1g090780core histone H2A/H2B/H3/H4chr1+View
Nicotiana tabacumNitab4.5_0000096g0190Histone-fold, Histone core, Histone H2BNitab4.5_0000096-View
Nicotiana tabacumNitab4.5_0000173g0180Histone H2B, Histone core, Histone-foldNitab4.5_0000173-View
Olea europaeaOeu007729.1chr4-View
Petunia axillarisPeaxi162Scf00983g00007Histone H2B.10Peaxi162Scf00983-View
Punica granatumPGR102G2144NC_045129.1+View
Punica granatumPGR102G2544NC_045129.1+View
Prunus persicaPrupe.6G250100K11252 - histone H2B (H2B)Pp06+View
Prunus persicaPrupe.6G113500K11252 - histone H2B (H2B)Pp06+View
Papaver somniferumPSO063G3501NC_039364.1+View
Papaver somniferumPSO801G0502NW_020628818.1-View
Papaver somniferumPSO339G3576NC_039366.1+View
Populus trichocarpaPotri.010G230600K11252 - histone H2B (H2B)Chr10+View
Populus trichocarpaPotri.009G028001K11252 - histone H2B (H2B)Chr09+View
Phaseolus vulgarisPhvul.011G066100K11252 - histone H2B (H2B)Chr11-View
Quercus lobataQL08p0530848-View
Quercus lobataQL01p0330101-View
Rhododendron simsiiRhsim13G0085200chr13+View
Striga asiaticaSGA_v2.0_scaffold277G46700scaffold277+View
Striga asiaticaSGA_v2.0_scaffold83G26458scaffold83+View
Salix brachistaSabra09G0019100GWHAAZH00000009+View
Salix brachistaSabra10G0178900GWHAAZH00000010+View
Simmondsia chinensisSc02g0001440GWHAASQ00000002+View
Sechium eduleSed0003837LG03-View
Schrenkiella parvulaSp5g15570K11252 - histone H2B (H2B)ch5-1+View
Schrenkiella parvulaSp6g22520K11252 - histone H2B (H2B)ch6-6+View
Solanum pennelliiSopen06g031190Histone superfamily protein | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleus, nucleosome | EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis | CONTAINS InterPro DOMAIN/s: Histone H2B , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: Histone superfamily proteinSpenn-ch06+View
Solanum pennelliiSopen06g032230Histone H2B - Gossypium hirsutum (Upland cotton), Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. | histone B2 (HTB2) | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleolus, nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2B , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: Histone superfamily proteinSpenn-ch06+View
Solanum pennelliiSopen11g003790Histone H2B - Gossypium hirsutum (Upland cotton), HTB4 | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleolus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2B , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: Histone superfamily proteinSpenn-ch11-View
Solanum pennelliiSopen11g026180Histone H2B - Gossypium hirsutum (Upland cotton), Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. | histone B2 (HTB2) | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleolus, nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2B , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: Histone superfamily proteinSpenn-ch11+View
Solanum tuberosumPGSC0003DMG400007131Histone H2BST4.03ch06+View
Solanum tuberosumPGSC0003DMG400000420Histone H2B.2ST4.03ch11+View
Trochodendron aralioidesTAR369G0604group18+View
Trochodendron aralioidesTAR636G0296group1+View
Trochodendron aralioidesTAR623G1616group7+View
Theobroma cacaoThecc.10G089700Histone superfamily proteinChromosome_10+View
Theobroma cacaoThecc.09G326200Histone superfamily proteinChromosome_9-View
Theobroma cacaoThecc.05G044700Histone superfamily proteinChromosome_5-View
Tarenaya hasslerianaTHA.LOC104806577histone H2B.9-likeNW_010962392.1-View
Tarenaya hasslerianaTHA.LOC104799465histone H2B.7-likeNW_010968505.1+View
Tarenaya hasslerianaTHA.LOC104810811histone H2B.11-likeNW_010965304.1+View
Tripterygium wilfordiiTWI53G1269NC_052244.1-View
Tripterygium wilfordiiTWI75G0743NC_052253.1+View
Tripterygium wilfordiiTWI15G0450NC_052247.1-View
Tripterygium wilfordiiTWI79G0631NC_052238.1+View
Tripterygium wilfordiiTWI74G1395NC_052234.1+View
Vaccinium macrocarponvmacro03247Similar to ATL57: RING-H2 finger protein ATL57 (Arabidopsis thaliana OX%3D3702)chr9_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo1127G0187CM024076.1-View