Anchorpoints

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG3G14800LG-3+View
Acer truncatumAtru.chr3.2642chr3-View
Actinidia chinensisActinidia23980Lachesis_group9-View
Actinidia chinensisActinidia06927Lachesis_group13+View
Actinidia chinensisActinidia16348Lachesis_group24+View
Actinidia chinensisActinidia11669Lachesis_group25+View
Arabidopsis lyrataAL6G23260scaffold_6-View
Arabidopsis lyrataAL1G59410scaffold_1+View
Avicennia marinaMSTRG.17606ScioBoG_19834_HRSCAF_19925+View
Avicennia marinaMSTRG.12457ScioBoG_17730_HRSCAF_17811-View
Avicennia marinaMSTRG.18444ScioBoG_22153_HRSCAF_22259+View
Amaranthus hybridusAh.06g193870Zinc finger CCCH domain-containing protein 53 (OsC3H53)AmaHy_arrow1_Scaffold_6-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.QQ4J84PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)arahy.Tifrunner.gnm1.Arahy.03-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.KYG6ZEPF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)arahy.Tifrunner.gnm1.Arahy.13-View
Arabidopsis thalianaAT1G51520RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2)%3B Has 257 Blast hits to 190 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 251%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink).Chr1+View
Arabidopsis thalianaAT5G12440CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein CCCH-type zinc fingerfamily protein with RNA-binding domain%3B FUNCTIONS IN: nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2)%3B Has 264 Blast hits to 227 proteins in 33 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 16%3B Fungi - 2%3B Plants - 228%3B Viruses - 0%3B Other Eukaryotes - 18 (source: NCBI BLink).Chr5-View
Brassica carinataBcaB08g37003ChrB08-View
Brassica napusC09p64450C09+View
Brassica napusA10p25390A10+View
Brassica oleraceaBolC9t59280HC9+View
Brassica rapaBraA10t44603ZA10+View
Beta vulgarisEL10Ac4g10210PF00642//PF13893 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)Chr4_EL10_PGA_scaffold1-View
Corylus avellanaHaze_23176Similar to Os03g0328900: Zinc finger CCCH domain-containing protein 22 (Oryza sativa subsp. japonica OX%3D39947)6+View
Coffea canephoraCc01_g05070Putative Zinc finger CCCH domain-containing protein 22chr1+View
Citrus clementinaCiclev10018237m.gscaffold_2+View
Cardamine hirsutaCARHR200660Zinc finger CCCH domain-containing protein 55Chr6+View
Carya illinoinensisCiPaw.13G154600PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)Chr13-View
Carya illinoinensisCiPaw.14G116500PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Chr14-View
Carica papayaCpa.g.sc84.22supercontig_84+View
Chenopodium quinoaAUR62039862Os07g0682400: Zinc finger CCCH domain-containing protein 53C_Quinoa_Scaffold_4462-View
Chenopodium quinoaAUR62000153Os07g0682400: Zinc finger CCCH domain-containing protein 53C_Quinoa_Scaffold_2088+View
Capsella rubellaCarub.0006s1095scaffold_6-View
Capsella rubellaCarub.0001s4037PTHR24009:SF3 - RNA RECOGNITION MOTIF-CONTAINING PROTEIN-RELATEDscaffold_1+View
Cucumis sativus L.CsaV3_1G043040zinc finger CCCH domain-containing protein 46-like isoform X1chr1-View
Davidia involucrataDinv36232GWHABJS00000007-View
Davidia involucrataDinv22159GWHABJS00000003+View
Durio zibethinusDuzib150G0767NW_019167882.1-View
Durio zibethinusDuzib170G0229NW_019167871.1+View
Erigeron canadensisECA233G0185Conyza_canadensis_scaffold:1-View
Eucalyptus grandisEucgr.J00738Chr10-View
Erythranthe guttataMigut.D00629scaffold_4+View
Erythranthe guttataMigut.N02345scaffold_14+View
Eutrema salsugineumThhalv10012926m.gPTHR24009:SF3 - RNA RECOGNITION MOTIF-CONTAINING PROTEIN-RELATEDscaffold_2-View
Fragaria x ananassaFAN25G3797PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)Fvb3-1+View
Fragaria x ananassaFAN21G1063PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)Fvb3-2-View
Fragaria x ananassaFAN11G2789PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)Fvb3-4+View
Fragaria x ananassaFAN16G2761PF00642 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)Fvb3-3-View
Fragaria vescaFvH4_3g28410PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)Fvb3-View
Gossypium hirsutumGohir.D09G108600PF00642//PF13893 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)D09-View
Gossypium hirsutumGohir.A07G123100PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)A07-View
Gossypium hirsutumGohir.A13G217100PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)A13+View
Gossypium hirsutumGohir.A09G112000PF00642//PF13893 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)A09-View
Gossypium raimondiiGorai.013G251700Chr13+View
Gossypium raimondiiGorai.006G126300Chr06-View
Helianthus annuusHanXRQChr13g0401401Probable RNA-binding (RRM/RBD/RNP motifs) family proteinHanXRQChr13+View
Lupinus albusLalb_Chr01g0001111Lalb_Chr01+View
Lactuca sativaLsat_1_v5_gn_6_25960Lsat_1_v8_lg_6-View
Malus domesticaMD03G1171700RNA-binding (RRM/RBD/RNP motifs) family proteinChr03-View
Malus domesticaMD11G1189200RNA-binding (RRM/RBD/RNP motifs) family proteinChr11-View
Manihot esculentaManes.06G161900Chromosome06-View
Manihot esculentaManes.14G004600Chromosome14+View
Olea europaeaOeu025888.3chr16+View
Olea europaeaOeu061306.1scaffold867-View
Petunia axillarisPeaxi162Scf00004g03412Zinc finger CCCH domain-containing protein 22Peaxi162Scf00004+View
Punica granatumPGR119G1652NC_045132.1-View
Punica granatumPGR031G0265NC_045127.1-View
Prunus persicaPrupe.4G255100PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)Pp04+View
Populus trichocarpaPotri.001G255400PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Chr01-View
Populus trichocarpaPotri.009G050600PF00642//PF14259 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6)Chr09-View
Quercus lobataQL01p0039271-View
Rosa chinensisRcHm_v2.0_Chr5g0053281RcHm_v2.0_Chr5+View
Rhododendron simsiiRhsim13G0217500chr13-View
Striga asiaticaSGA_v2.0_scaffold29G12311scaffold29-View
Salix brachistaSabra16G0156700GWHAAZH00000016+View
Salix brachistaSabra09G0037000GWHAAZH00000009-View
Simmondsia chinensisSc09g0000820GWHAASQ00000009+View
Sapria himalayanaSHI29808scaffold68_2605431-View
Schrenkiella parvulaSp6g31190PF00642//PF13893 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)ch6-6+View
Solanum pennelliiSopen11g025070RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family proteinSpenn-ch11-View
Solanum tuberosumPGSC0003DMG400029993Nucleic acid binding proteinST4.03ch11-View
Selenicereus undatusHund22002Scaffold_33680-View
Selenicereus undatusHund07467Scaffold_33676-View
Theobroma cacaoThecc.09G239500Zinc finger family protein / RNA recognition motif-containing proteinChromosome_9+View
Tarenaya hasslerianaTHA.LOC104816871zinc finger CCCH domain-containing protein 55-like isoform X1NW_010965869.1-View
Tripterygium wilfordiiTWI60G1511NC_052246.1+View
Tripterygium wilfordiiTWI32G0269NC_052254.1-View
Vaccinium macrocarponvmacro04124Similar to At3g51950: Zinc finger CCCH domain-containing protein 46 (Arabidopsis thaliana OX%3D3702)chr9_Vaccinium_macrocarpon_Stevens_v1+View
Vitis viniferaGSVIVG01031538001chr6-View