Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc01g105610.1RING/U-box superfamily protein (AHRD V3.3 *-* A0A2U1LC40_ARTAN)SL4.0ch01+View
Solyc04g074790.3RING/U-box superfamily protein (AHRD V3.3 *-* F4JJ02_ARATH)SL4.0ch04+View
Solyc04g014220.1RING/U-box superfamily protein (AHRD V3.3 *-* F4JJ02_ARATH)SL4.0ch04+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG4G8340LG-4+View
Aethionema arabicumAa31LG3G16800LG-3-View
Acer truncatumAtru.chr3.1337chr3-View
Acer truncatumAtru.chr13.1110chr13-View
Acer truncatumAtru.chr6.1222chr6+View
Actinidia chinensisActinidia24011Lachesis_group2+View
Actinidia chinensisActinidia01863Lachesis_group11-View
Arabidopsis lyrataAL6G20880scaffold_6+View
Avicennia marinaMSTRG.3753ScioBoG_102836_HRSCAF_103072-View
Amaranthus hybridusAh.03g141920RING-H2 finger protein ATL51 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL51)AmaHy_arrow1_Scaffold_3-View
Aquilegia oxysepalaAqoxy6G00699CHR06-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.1BG2C5PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDarahy.Tifrunner.gnm1.Arahy.10-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.RYUR57PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDarahy.Tifrunner.gnm1.Arahy.13-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.WBD5UZPF00560//PF08263//PF13639//PF13855 - Leucine Rich Repeat (LRR_1) // Leucine rich repeat N-terminal domain (LRRNT_2) // Ring finger domain (zf-RING_2) // Leucine rich repeat (LRR_8)arahy.Tifrunner.gnm1.Arahy.20-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.2KT40ZPTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDarahy.Tifrunner.gnm1.Arahy.03-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.CUW7MQPTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDarahy.Tifrunner.gnm1.Arahy.17-View
Arabidopsis thalianaAT4G38140RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: anchored to membrane%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G18650.1)%3B Has 7548 Blast hits to 7531 proteins in 260 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1845%3B Fungi - 600%3B Plants - 4291%3B Viruses - 10%3B Other Eukaryotes - 802 (source: NCBI BLink).Chr4-View
Arabidopsis thalianaAT5G10380RING/U-box superfamily protein Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. RING1%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5+View
Amborella trichopodaATR0684G056AmTr_v1.0_scaffold00008-View
Brassica carinataBcaB08g37112ChrB08-View
Brassica napusC09p67030C09-View
Brassica napusA10p27220A10-View
Brassica oleraceaBolC9t59476HC9-View
Brassica rapaBraA10t44772ZA10-View
Beta vulgarisEL10Ac1g01133PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDChr1_EL10_PGA_scaffold3-View
Beta vulgarisEL10Ac6g14811PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATEDChr6_EL10_PGA_scaffold0-View
Camellia sinensis var. sinensisCSS0001119PREDICTED: RING-H2 finger protein ATL54 [Vitis vinifera]Chr4-View
Camellia sinensis var. sinensisCSS0014171unnamed protein product [Coffea canephora]Chr1-View
Camellia sinensis var. sinensisCSS0030238RING/U-box superfamily protein, putative [Theobroma cacao]Chr9+View
Cannabis sativaCANSAT01G0420NC_044373.1+View
Cannabis sativaCANSAT11G1436NC_044377.1+View
Corylus avellanaHaze_24826Similar to ATL55: E3 ubiquitin-protein ligase RING1 (Arabidopsis thaliana OX%3D3702)8+View
Corylus avellanaHaze_10564Similar to ATL54: RING-H2 finger protein ATL54 (Arabidopsis thaliana OX%3D3702)9-View
Coffea canephoraCc07_g14510Putative uncharacterized proteinchr7-View
Coffea canephoraCc10_g06590Ring finger protein, putativechr10-View
Coffea canephoraCc02_g21130Putative RING-H2 finger protein ATL52chr2-View
Citrus clementinaCiclev10025698m.gscaffold_7-View
Citrus clementinaCiclev10001098m.gscaffold_5-View
Ceratophyllum demersumCDE03G040612-View
Ceratophyllum demersumCDE06G25804+View
Carpinus fangianaCfa005686Cfa02+View
Carpinus fangianaCfa002589Cfa01+View
Cardamine hirsutaCARHR202920Ring finger protein, putativeChr6-View
Carya illinoinensisCiPaw.05G032000PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDChr05-View
Carya illinoinensisCiPaw.03G146500PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATEDChr03+View
Carya illinoinensisCiPaw.04G104200PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDChr04+View
Carya illinoinensisCiPaw.06G156200PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDChr06+View
Carya illinoinensisCiPaw.15G044900K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44)Chr15-View
Citrullus lanatusClCG01G018570Ring finger protein, putativeCG_Chr01-View
Citrullus lanatusClCG08G011350Ring finger protein, putativeCG_Chr08+View
Cucumis meloMELO3C007735.2E3 ubiquitin-protein ligase RING1chr08-View
Cucumis meloMELO3C011051.2RING-H2 finger protein ATL54-likechr03-View
Carica papayaCpa.g.sc36.190supercontig_36+View
Carica papayaCpa.g.sc55.65supercontig_55-View
Chenopodium quinoaAUR62018981ATL54: RING-H2 finger protein ATL54C_Quinoa_Scaffold_3876+View
Chenopodium quinoaAUR62012903ATL51: RING-H2 finger protein ATL51C_Quinoa_Scaffold_1040-View
Chenopodium quinoaAUR62027198ATL54: RING-H2 finger protein ATL54C_Quinoa_Scaffold_2924-View
Chenopodium quinoaAUR62027822ATL54: RING-H2 finger protein ATL54C_Quinoa_Scaffold_3784+View
Capsella rubellaCarub.0006s0885PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDscaffold_6+View
Cucumis sativus L.CsaV3_2G029930RING-H2 finger protein ATL54-likechr2+View
Cucumis sativus L.CsaV3_6G045220RING-H2 finger proteinchr6-View
Davidia involucrataDinv08872GWHABJS00000021-View
Davidia involucrataDinv24165GWHABJS00000005-View
Davidia involucrataDinv44812GWHABJS00000002+View
Davidia involucrataDinv13240GWHABJS00000014-View
Durio zibethinusDuzib093G1162NW_019167937.1+View
Durio zibethinusDuzib041G0657NW_019167826.1-View
Durio zibethinusDuzib132G0563NW_019167915.1-View
Durio zibethinusDuzib147G0707NW_019168470.1+View
Durio zibethinusDuzib187G0211NW_019167860.1+View
Eucalyptus grandisEucgr.B00047Chr06-View
Eucalyptus grandisEucgr.F00383Chr06-View
Eucalyptus grandisEucgr.H04739Chr08-View
Erythranthe guttataMigut.L00164scaffold_12+View
Erythranthe guttataMigut.B00576scaffold_2-View
Eutrema salsugineumThhalv10015812m.gPTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATEDscaffold_2+View
Fragaria x ananassaFAN23G1114PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATEDFvb1-3-View
Fragaria x ananassaFAN28G1256PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDFvb1-1+View
Fragaria x ananassaFAN19G0666PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDFvb1-4-View
Fragaria x ananassaFAN04G3046PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDFvb5-4-View
Fragaria x ananassaFAN26G2743PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDFvb1-2-View
Fragaria x ananassaFAN13G1247PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDFvb5-2-View
Fragaria vescaFvH4_1g20164PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDFvb1-View
Gossypium hirsutumGohir.A05G222900PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDA05-View
Gossypium hirsutumGohir.D05G225600PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDD05-View
Gossypium hirsutumGohir.A12G084000PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDA12-View
Gossypium hirsutumGohir.D12G081900PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDD12+View
Glycine maxGlyma.11G242500PTHR14155//PTHR14155:SF87 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDGm11+View
Glycine maxGlyma.14G177900PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDGm14+View
Glycine maxGlyma.15G056000PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDGm15+View
Glycine maxGlyma.05G175400PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDGm05-View
Glycine maxGlyma.18G014500PTHR14155//PTHR14155:SF87 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDGm18-View
Glycine maxGlyma.04G091400PTHR14155:SF78 - RING-H2 FINGER PROTEIN ATL43Gm04-View
Glycine maxGlyma.02G210400PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDGm02+View
Gossypium raimondiiGorai.009G233100Chr09-View
Gossypium raimondiiGorai.008G091200Chr08+View
Lupinus albusLalb_Chr11g0065031PTHR14155//PTHR14155:SF78 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL43Lalb_Chr11-View
Lupinus albusLalb_Chr07g0185351PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDLalb_Chr07+View
Lupinus albusLalb_Chr17g0344321PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDLalb_Chr17+View
Lotus japonicusLj1g0000826PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDchr1+View
Lotus japonicusLj4g0012708PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATEDchr4+View
Lotus japonicusLj4g0014527PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDchr4-View
Lonicera japonicaLj4A729T42GWHAAZE00000004+View
Lonicera japonicaLj4P279T8GWHAAZE00000004-View
Lonicera japonicaLj5P233T15GWHAAZE00000005-View
Lactuca sativaLsat_1_v5_gn_1_2761PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDLsat_1_v8_lg_1-View
Lactuca sativaLsat_1_v5_gn_9_73540Lsat_1_v8_lg_9+View
Magnolia biondiiMBI02_g20472_MAGBIOAED:0.22Chr02+View
Magnolia biondiiMBI06_g03313_MAGBIOAED:0.03Chr06+View
Malus domesticaMD15G1377700RING/U-box superfamily proteinChr15+View
Malus domesticaMD15G1317400RING/U-box superfamily proteinChr15-View
Malus domesticaMD01G1036900RING/U-box superfamily proteinChr01+View
Malus domesticaMD08G1190400RING/U-box superfamily proteinChr08+View
Manihot esculentaManes.10G103400Chromosome10-View
Manihot esculentaManes.02G148600Chromosome02-View
Manihot esculentaManes.12G129600Chromosome12-View
Manihot esculentaManes.13G097400Chromosome13+View
Manihot esculentaManes.07G037700Chromosome07+View
Medicago truncatulaMedtr2g009310RING-H2 zinc finger proteinchr2+View
Medicago truncatulaMedtr8g089880zinc finger, C3HC4 type (RING finger) proteinchr8-View
Nelumbo nuciferaNn5g29979chr5-View
Nelumbo nuciferaNn1g05473chr1+View
Nicotiana tabacumNitab4.5_0000241g0150Zinc finger, RING-type, Zinc finger, RING/FYVE/PHD-typeNitab4.5_0000241-View
Olea europaeaOeu032370.1chr20+View
Olea europaeaOeu000876.1chr10+View
Oryza sativa ssp. japonicaOs09g0468800Similar to RING-H2 finger protein ATL5F.chr09-View
Petunia axillarisPeaxi162Scf00299g00919RING/U-box superfamily proteinPeaxi162Scf00299-View
Petunia axillarisPeaxi162Scf00569g00032RING/U-box superfamily proteinPeaxi162Scf00569-View
Petunia axillarisPeaxi162Scf00237g00125RING/U-box superfamily proteinPeaxi162Scf00237-View
Punica granatumPGR102G2551NC_045129.1-View
Punica granatumPGR031G1317NC_045127.1+View
Prunus persicaPrupe.6G194300PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATEDPp06+View
Prunus persicaPrupe.1G524400PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDPp01+View
Prunus persicaPrupe.8G066400Pp08+View
Pisum sativumPsat7g057920Ring finger domainchr7LG7+View
Populus trichocarpaPotri.002G101800PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDChr02+View
Populus trichocarpaPotri.017G049300PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDChr17-View
Populus trichocarpaPotri.005G071300PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDChr05-View
Populus trichocarpaPotri.007G097500PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATEDChr07+View
Phaseolus vulgarisPhvul.001G254300Chr01+View
Phaseolus vulgarisPhvul.008G177400PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMEDChr08+View
Phaseolus vulgarisPhvul.002G260500PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATEDChr02-View
Quercus lobataQL11p02324211+View
Quercus lobataQL06p0479386-View
Rosa chinensisRcHm_v2.0_Chr2g0112241RcHm_v2.0_Chr2-View
Rhododendron simsiiRhsim06G0076900chr06-View
Rhododendron simsiiRhsim10G0169000chr10+View
Striga asiaticaSGA_v2.0_scaffold108G30900scaffold108+View
Striga asiaticaSGA_v2.0_scaffold335G49093scaffold335-View
Striga asiaticaSGA_v2.0_scaffold83G26340scaffold83+View
Salix brachistaSabra02G0079800GWHAAZH00000002+View
Salix brachistaSabra05G0058300GWHAAZH00000005-View
Salix brachistaSabra17G0036500GWHAAZH00000017-View
Salix brachistaSabra07G0080800GWHAAZH00000007+View
Simmondsia chinensisSc23g0000470GWHAASQ00000023+View
Simmondsia chinensisSc16g0000330GWHAASQ00000016+View
Sechium eduleSed0004276LG04+View
Sechium eduleSed0012639LG10-View
Sechium eduleSed0020452LG14+View
Schrenkiella parvulaSp6g33070PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATEDch6-6-View
Solanum pennelliiSopen04g029750RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: inflorescence meristem, root, flower | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily proteinSpenn-ch04+View
Solanum pennelliiSopen04g006320RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: inflorescence meristem, root, flower | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily proteinSpenn-ch04+View
Solanum pennelliiSopen11g005110RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: plasma membrane | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily proteinSpenn-ch11+View
Solanum pennelliiSopen01g048070RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily proteinSpenn-ch01+View
Solanum tuberosumPGSC0003DMG400016217Ring finger proteinST4.03ch11-View
Solanum tuberosumPGSC0003DMG400023634Ring finger proteinST4.03ch04+View
Solanum tuberosumPGSC0003DMG400017761Ring finger proteinST4.03ch12+View
Solanum tuberosumPGSC0003DMG400030821Ring finger proteinST4.03ch04+View
Solanum tuberosumPGSC0003DMG400012570Ring finger proteinST4.03ch01+View
Trochodendron aralioidesTAR376G0764group14+View
Trochodendron aralioidesTAR381G1377group11-View
Trochodendron aralioidesTAR628G0774group5+View
Trochodendron aralioidesTAR625G0609group4+View
Theobroma cacaoThecc.01G094900RING/U-box superfamily proteinChromosome_1-View
Theobroma cacaoThecc.02G133000RING/U-box superfamily proteinChromosome_2-View
Tarenaya hasslerianaTHA.LOC104798800E3 ubiquitin-protein ligase RING1NW_010960188.1-View
Trifolium pratenseTPR.G6239Tp57577_TGAC_v2_LG3-View
Tripterygium wilfordiiTWI74G1689NC_052234.1-View
Tripterygium wilfordiiTWI56G0488NC_052242.1-View
Tripterygium wilfordiiTWI53G0251NC_052244.1+View
Tripterygium wilfordiiTWI12G1335NC_052243.1+View
Vigna mungoVMungo0251G2524CM024069.1-View
Vigna mungoVMungo1383G2499CM024070.1+View
Vitis viniferaGSVIVG01009096001chr18+View
Zea maysZm00001eb315620Zm00001e034423 RING-H2 finger protein ATL5F7-View