Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc05g055450.3Protein BTR1 (AHRD V3.3 *** A0A2G2XV39_CAPAN)SL4.0ch05+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG11G5300LG-11-View
Acer truncatumAtru.chr12.903chr12-View
Actinidia chinensisActinidia38891Lachesis_group17+View
Actinidia chinensisActinidia34789Lachesis_group6-View
Arabidopsis lyrataAL6G14070scaffold_6-View
Avicennia marinaMSTRG.8120ScioBoG_102841_HRSCAF_103114-View
Avicennia marinaMSTRG.27501ScioBoG_8578_HRSCAF_8617-View
Aquilegia oxysepalaAqoxy2G01633CHR02+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.2WVS1UK14944 - RNA-binding protein Nova (NOVA)arahy.Tifrunner.gnm1.Arahy.19-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.68AZQVK14944 - RNA-binding protein Nova (NOVA)arahy.Tifrunner.gnm1.Arahy.09-View
Arabidopsis thalianaAT5G04430binding to TOMV RNA 1L (long form) Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication. BINDING TO TOMV RNA 1S (SHORT FORM) (BTR1S)%3B FUNCTIONS IN: single-stranded RNA binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%2C regulation of viral protein levels in host cell%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology (InterPro:IPR004087)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). binding to TOMV RNA 1L (long form) (BTR1L)%3B CONTAINS InterPro DOMAIN/s: K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology (InterPro:IPR004087)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1)%3B Has 5613 Blast hits to 2614 proteins in 213 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 3980%3B Fungi - 530%3B Plants - 787%3B Viruses - 0%3B Other Eukaryotes - 308 (source: NCBI BLink).Chr5-View
Brassica carinataBcaB01g05898ChrB01-View
Brassica carinataBcaC06g32151ChrC06-View
Brassica carinataBcaC05g29458ChrC05+View
Brassica napusA10p31650A10+View
Brassica napusA03p01680A03-View
Brassica napusC09p72320C09+View
Brassica napusA05p38680A05+View
Brassica napusC05p57550C05+View
Brassica napusC02p01930C02-View
Brassica napusC03p02050C03-View
Brassica oleraceaBolC9t59976HC9+View
Brassica oleraceaBolC2t06150HC2-View
Brassica oleraceaBolC5t34412HC5+View
Brassica oleraceaBolC3t12758HC3-View
Brassica rapaBraA10t45211ZA10+View
Brassica rapaBraA02t04812ZA02-View
Brassica rapaBraA03t09543ZA03-View
Brassica rapaBraA05t22659ZA05+View
Camellia sinensis var. sinensisCSS0030750PREDICTED: RNA-binding protein Nova-1 isoform X2 [Vitis vinifera]Chr1+View
Camellia sinensis var. sinensisCSS0001382PREDICTED: RNA-binding protein Nova-2 isoform X3 [Vitis vinifera]Chr7-View
Capsicum annuumCAN.G135.24PGAv.1.6.scaffold135-View
Cannabis sativaCANSAT56G2777NC_044371.1-View
Cicer arietinum L.Ca_10441_v3Ca_LG4_v3-View
Corylus avellanaHaze_16775Similar to BTR1: Protein BTR1 (Arabidopsis thaliana OX%3D3702)11-View
Coffea canephoraCc02_g10580Putative Poly(rC)-binding protein 3chr2+View
Citrus clementinaCiclev10032050m.gscaffold_4-View
Carpinus fangianaCfa001777Cfa01+View
Cardamine hirsutaCARHR208830Poly(Rc)-binding protein 2Chr6+View
Carya illinoinensisCiPaw.02G170100K14944 - RNA-binding protein Nova (NOVA)Chr02+View
Carya illinoinensisCiPaw.01G265300K14944 - RNA-binding protein Nova (NOVA)Chr01+View
Citrullus lanatusClCG05G021420RNA-binding protein Nova-1CG_Chr05-View
Cucumis meloMELO3C012385.2protein BTR1chr10-View
Carica papayaCpa.g.sc53.166supercontig_53-View
Capsella rubellaCarub.0006s0337K14944 - RNA-binding protein Nova (NOVA)scaffold_6-View
Cucumis sativus L.CsaV3_5G035820RNA-binding protein Nova-1chr5+View
Daucus carotaDCAR_019061hypothetical proteinDCARv2_Chr5+View
Davidia involucrataDinv31262GWHABJS00000004+View
Davidia involucrataDinv36360GWHABJS00000009-View
Durio zibethinusDuzib114G0852NW_019167926.1-View
Durio zibethinusDuzib128G1656NW_019168481.1-View
Eucalyptus grandisEucgr.G02737Chr07+View
Erythranthe guttataMigut.F01911scaffold_6+View
Eutrema salsugineumThhalv10014068m.gscaffold_2-View
Fragaria x ananassaFAN01G0566K14944 - RNA-binding protein Nova (NOVA)Fvb7-4-View
Fragaria x ananassaFAN10G3468PTHR10288//PTHR10288:SF142 - KH DOMAIN CONTAINING RNA BINDING PROTEIN // PASILLA, ISOFORM DFvb7-1-View
Fragaria x ananassaFAN03G1234K14944 - RNA-binding protein Nova (NOVA)Fvb7-3-View
Fragaria x ananassaFAN06G2771K14944 - RNA-binding protein Nova (NOVA)Fvb7-2-View
Fragaria vescaFvH4_7g06600K14944 - RNA-binding protein Nova (NOVA)Fvb7-View
Gossypium hirsutumGohir.D10G208300K14944 - RNA-binding protein Nova (NOVA)D10+View
Gossypium hirsutumGohir.D05G292300KOG2191//KOG2192 - RNA-binding protein NOVA1/PASILLA and related KH domain proteins // PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domainD05+View
Gossypium hirsutumGohir.A10G200400K14944 - RNA-binding protein Nova (NOVA)A10+View
Gossypium hirsutumGohir.A05G291200K14944 - RNA-binding protein Nova (NOVA)A05+View
Gossypium hirsutumGohir.A06G168900K14944 - RNA-binding protein Nova (NOVA)A06-View
Glycine maxGlyma.20G191700K14944 - RNA-binding protein Nova (NOVA)Gm20+View
Glycine maxGlyma.10G198300K14944 - RNA-binding protein Nova (NOVA)Gm10-View
Gossypium raimondiiGorai.010G207600Chr10-View
Gossypium raimondiiGorai.009G308500Chr09+View
Gossypium raimondiiGorai.011G234000Chr11+View
Helianthus annuusHanXRQChr14g0456171Putative K Homology domainHanXRQChr14+View
Helianthus annuusHanXRQChr08g0218311Probable binding to TOMV RNA 1L (long form)HanXRQChr08+View
Lupinus albusLalb_Chr02g0151111K14944 - RNA-binding protein Nova (NOVA)Lalb_Chr02-View
Lotus japonicusLj5g0011720K14944 - RNA-binding protein Nova (NOVA)chr5+View
Lactuca sativaLsat_1_v5_gn_2_103201K14944 - RNA-binding protein Nova (NOVA)Lsat_1_v8_lg_2+View
Malus domesticaMD07G1074100binding to TOMV RNA 1L (long form)Chr07-View
Medicago truncatulaMedtr1g090773binding to TOMV RNA 1L (long form) proteinchr1-View
Nelumbo nuciferaNn6g35202chr6+View
Nicotiana tabacumNitab4.5_0000096g0210K Homology domain, type 1, K Homology domainNitab4.5_0000096+View
Petunia axillarisPeaxi162Scf00253g00318binding to TOMV RNA 1L (long form)Peaxi162Scf00253+View
Punica granatumPGR142G3968NC_045128.1+View
Prunus persicaPrupe.2G093900Pp02-View
Pisum sativumPsat6g173360KH domainchr6LG2-View
Papaver somniferumPSO063G2817NC_039364.1-View
Populus trichocarpaPotri.010G230500K14944 - RNA-binding protein Nova (NOVA)Chr10-View
Populus trichocarpaPotri.008G030700K14944 - RNA-binding protein Nova (NOVA)Chr08+View
Phaseolus vulgarisPhvul.007G141100K14944 - RNA-binding protein Nova (NOVA)Chr07-View
Quercus lobataQL08p0530968+View
Rhododendron simsiiRhsim09G0145400chr09+View
Striga asiaticaSGA_v2.0_scaffold62G21367scaffold62+View
Salvia bowleyanaSalBow4G0167GWHASIU00000008-View
Salvia bowleyanaSalBow6G4419GWHASIU00000002+View
Salix brachistaSabra10G0178800GWHAAZH00000010-View
Salix brachistaSabra08G0020500GWHAAZH00000008+View
Simmondsia chinensisSc09g0005840GWHAASQ00000009+View
Sechium eduleSed0007053LG07+View
Sechium eduleSed0013139LG06+View
Schrenkiella parvulaSp3g08770PTHR10288//PTHR10288:SF142 - KH DOMAIN CONTAINING RNA BINDING PROTEIN // PASILLA, ISOFORM Dch3-1-View
Schrenkiella parvulaSp6g38310K14944 - RNA-binding protein Nova (NOVA)ch6-6+View
Solanum pennelliiSopen11g003810Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication. | binding to TOMV RNA 1L (long form) (BTR1L) | CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup , K Homology , K Homology, type 1 | BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing proteinSpenn-ch11+View
Solanum pennelliiSopen05g033900Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication. | binding to TOMV RNA 1L (long form) (BTR1L) | CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup , K Homology , K Homology, type 1 | BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing proteinSpenn-ch05+View
Solanum tuberosumPGSC0003DMG400027335Far upstream element-binding proteinST4.03ch11-View
Solanum tuberosumPGSC0003DMG400023482Far upstream element-binding proteinST4.03ch05+View
Trochodendron aralioidesTAR633G1158group2+View
Trochodendron aralioidesTAR623G1080group7+View
Trochodendron aralioidesTAR369G0057group18-View
Theobroma cacaoThecc.10G089500Binding to TOMV RNA 1L (long form)Chromosome_10-View
Tarenaya hasslerianaTHA.LOC104816445protein BTR1-like isoform X1NW_010965775.1-View
Trifolium pratenseTPR.G37741Tp57577_TGAC_v2_LG1-View
Tripterygium wilfordiiTWI15G0156NC_052247.1+View
Tripterygium wilfordiiTWI38G0253NC_052252.1+View
Tripterygium wilfordiiTWI63G1099NC_052240.1+View
Utricularia gibbaunitig_899.g15058unitig_899-View
Vaccinium macrocarponvmacro10262Similar to BTR1: Protein BTR1 (Arabidopsis thaliana OX%3D3702)chr8_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo0720G0843CM024071.1-View
Vitis viniferaGSVIVG01016165001chr13-View