Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sc10g0001760GWHAASQ00000010+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG5G7140LG-5-View
Acer truncatumAtru.chr12.410chr12-View
Actinidia chinensisActinidia34422Lachesis_group15-View
Actinidia chinensisActinidia02370Lachesis_group3+View
Actinidia chinensisActinidia02931Lachesis_group22-View
Actinidia chinensisActinidia13888Lachesis_group21+View
Actinidia chinensisActinidia23924Lachesis_group9+View
Arabidopsis lyrataAL4G23700scaffold_4+View
Amaranthus hybridusAh.16g102500Pumilio homolog 2 (APUM-2) (AtPUM2)AmaHy_arrow1_Scaffold_16+View
Amaranthus hybridusAh.10g036930Pumilio homolog 1 (APUM-1) (AtPUM1)AmaHy_arrow1_Scaffold_10+View
Aquilegia oxysepalaAqoxy1G00888CHR01-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.H68WEXK17943 - pumilio RNA-binding family (PUM)arahy.Tifrunner.gnm1.Arahy.18-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.M6FCCPK17943 - pumilio RNA-binding family (PUM)arahy.Tifrunner.gnm1.Arahy.07-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.XAI7HTK17943 - pumilio RNA-binding family (PUM)arahy.Tifrunner.gnm1.Arahy.17-View
Arabidopsis thalianaAT2G29140pumilio 3 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. pumilio 3 (PUM3)%3B FUNCTIONS IN: RNA binding%2C binding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940)%2C Pumilio RNA-binding repeat (InterPro:IPR001313)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1)%3B Has 3920 Blast hits to 2027 proteins in 241 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 815%3B Fungi - 1344%3B Plants - 871%3B Viruses - 0%3B Other Eukaryotes - 882 (source: NCBI BLink).Chr2+View
Beta vulgarisEL10Ac7g16054K17943 - pumilio RNA-binding family (PUM)Chr7_EL10_PGA_scaffold5+View
Beta vulgarisEL10Ac2g04718K17943 - pumilio RNA-binding family (PUM)Chr2_EL10_PGA_scaffold6-View
Camellia sinensis var. sinensisCSS0027403Pumilio 2 isoform 1 [Theobroma cacao]Chr11+View
Camellia sinensis var. sinensisCSS0020268PREDICTED: pumilio homolog 2-like [Vitis vinifera]Chr1+View
Capsicum annuumCAN.G394.72PGAv.1.6.scaffold394+View
Cannabis sativaCANSAT56G2063NC_044371.1-View
Cicer arietinum L.Ca_20621_v3Ca_LG6_v3-View
Cicer arietinum L.Ca_05873_v3Ca_LG2_v3-View
Corylus avellanaHaze_24147Similar to APUM1: Pumilio homolog 1 (Arabidopsis thaliana OX%3D3702)6+View
Corylus avellanaHaze_17097Similar to APUM2: Pumilio homolog 2 (Arabidopsis thaliana OX%3D3702)11+View
Coffea canephoraCc02_g07540Pumilio homolog 1chr2-View
Coffea canephoraCc01_g13230Pumilio homolog 2chr1+View
Citrus clementinaCiclev10027726m.gscaffold_8+View
Citrus clementinaCiclev10030588m.gscaffold_4-View
Ceratophyllum demersumCDE02G33671+View
Ceratophyllum demersumCDE09G08597-View
Carpinus fangianaCfa001446Cfa01-View
Carpinus fangianaCfa011537Cfa04+View
Cardamine hirsutaCARHR007240pumilio 3Chr1-View
Carya illinoinensisCiPaw.14G066500PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDChr14-View
Carya illinoinensisCiPaw.13G090500PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDChr13-View
Carya illinoinensisCiPaw.02G185700PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDChr02+View
Citrullus lanatusClCG07G003510Pumilio-like proteinCG_Chr07+View
Citrullus lanatusClCG02G019970pumilio 3 LENGTH=964CG_Chr02-View
Cucumis meloMELO3C025897.2pumilio homolog 1-likechr11+View
Cucumis meloMELO3C023878.2pumilio homolog 1-likechr10+View
Carica papayaCpa.g.sc81.108supercontig_81-View
Carica papayaCpa.g.sc1.431supercontig_1+View
Chenopodium quinoaAUR62001750APUM1: Pumilio homolog 1C_Quinoa_Scaffold_2716-View
Chenopodium quinoaAUR62012123APUM1: Pumilio homolog 1C_Quinoa_Scaffold_1995+View
Chenopodium quinoaAUR62040713APUM1: Pumilio homolog 1C_Quinoa_Scaffold_1465-View
Chenopodium quinoaAUR62020021APUM1: Pumilio homolog 1C_Quinoa_Scaffold_2465+View
Capsella rubellaCarub.0004s1021K17943 - pumilio RNA-binding family (PUM)scaffold_4-View
Cucumis sativus L.CsaV3_5G008260pumilio homolog 1-likechr5+View
Cucumis sativus L.CsaV3_6G016670pumilio homolog 1-likechr6-View
Daucus carotaDCAR_027601hypothetical proteinDCARv2_Chr8+View
Daucus carotaDCAR_005952hypothetical proteinDCARv2_Chr2-View
Daucus carotaDCAR_007433hypothetical proteinDCARv2_Chr2-View
Daucus carotaDCAR_018922hypothetical proteinDCARv2_Chr5+View
Davidia involucrataDinv42981GWHABJS00000085+View
Davidia involucrataDinv26036GWHABJS00000009-View
Davidia involucrataDinv43118GWHABJS00000085-View
Davidia involucrataDinv06763GWHABJS00000004+View
Davidia involucrataDinv34272GWHABJS00000007+View
Durio zibethinusDuzib170G0812NW_019167871.1-View
Durio zibethinusDuzib114G0626NW_019167926.1-View
Durio zibethinusDuzib168G1334NW_019168159.1-View
Durio zibethinusDuzib150G0564NW_019167882.1+View
Durio zibethinusDuzib106G0980NW_019168492.1-View
Erigeron canadensisECA248G3213Conyza_canadensis_scaffold:9+View
Erigeron canadensisECA233G2502Conyza_canadensis_scaffold:1-View
Eucalyptus grandisEucgr.G02951Chr07+View
Eucalyptus grandisEucgr.B02314Chr02-View
Erythranthe guttataMigut.F00760scaffold_6-View
Eutrema salsugineumThhalv10016184m.gK17943 - pumilio RNA-binding family (PUM)scaffold_10+View
Fragaria x ananassaFAN11G0426K17943 - pumilio RNA-binding family (PUM)Fvb3-4-View
Fragaria x ananassaFAN16G2512K17943 - pumilio RNA-binding family (PUM)Fvb3-3+View
Fragaria x ananassaFAN21G2101K17943 - pumilio RNA-binding family (PUM)Fvb3-2+View
Fragaria x ananassaFAN25G0317K17943 - pumilio RNA-binding family (PUM)Fvb3-1-View
Fragaria x ananassaFAN06G1800K17943 - pumilio RNA-binding family (PUM)Fvb7-2-View
Fragaria x ananassaFAN03G1258K17943 - pumilio RNA-binding family (PUM)Fvb7-3-View
Fragaria x ananassaFAN10G0195K17943 - pumilio RNA-binding family (PUM)Fvb7-1+View
Fragaria x ananassaFAN06G0319PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDFvb7-2+View
Fragaria x ananassaFAN01G0522K17943 - pumilio RNA-binding family (PUM)Fvb7-4-View
Fragaria x ananassaFAN01G0641K17943 - pumilio RNA-binding family (PUM)Fvb7-4-View
Fragaria vescaFvH4_7g22880PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATEDFvb7+View
Fragaria vescaFvH4_3g36870PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATEDFvb3+View
Gossypium hirsutumGohir.D05G094200PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDD05-View
Gossypium hirsutumGohir.D03G122100PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDD03-View
Gossypium hirsutumGohir.A07G099800PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDA07+View
Gossypium hirsutumGohir.A05G093700PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDA05-View
Glycine maxGlyma.12G060400K17943 - pumilio RNA-binding family (PUM)Gm12-View
Glycine maxGlyma.15G035900K17943 - pumilio RNA-binding family (PUM)Gm15-View
Glycine maxGlyma.11G136700K17943 - pumilio RNA-binding family (PUM)Gm11-View
Gossypium raimondiiGorai.001G112000Chr01+View
Gossypium raimondiiGorai.009G097200Chr09-View
Gossypium raimondiiGorai.003G129200Chr03-View
Helianthus annuusHanXRQChr08g0221001Putative nucleic acid binding NABP; Armadillo-type foldHanXRQChr08+View
Lupinus albusLalb_Chr17g0346321PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATEDLalb_Chr17+View
Lupinus albusLalb_Chr04g0251081PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATEDLalb_Chr04-View
Lotus japonicusLjContig00141g0002299PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDContig00141-View
Lonicera japonicaLj1C941G2GWHAAZE00000001+View
Lonicera japonicaLj2C1068T5GWHAAZE00000002+View
Lonicera japonicaLj1A147T86GWHAAZE00000001-View
Lonicera japonicaLj8A81T83GWHAAZE00000008-View
Malus domesticaMD01G1136900pumilio 2Chr01+View
Malus domesticaMD03G1087000pumilio 1Chr03-View
Malus domesticaMD11G1096100pumilio 1Chr11-View
Malus domesticaMD07G1201900pumilio 2Chr07+View
Manihot esculentaManes.01G170200Chromosome01-View
Manihot esculentaManes.10G027800Chromosome10-View
Manihot esculentaManes.02G129900Chromosome02-View
Medicago truncatulaMedtr4g064670pumilio Mpt5 protein, putativechr4+View
Medicago truncatulaMedtr2g097670pumilio Mpt5 protein, putativechr2+View
Medicago truncatulaMedtr5g080390pumilio-family RNA-binding repeatproteinchr5+View
Nelumbo nuciferaNn2g13415chr2+View
Olea europaeaOeu004173.2chr4+View
Oryza sativa ssp. japonicaOs01g0844800Similar to Pumilio RBD (Fragment). Similar to predicted protein. Hypothetical conserved gene.chr01+View
Punica granatumPGR102G0508NC_045129.1+View
Punica granatumPGR142G0995NC_045128.1+View
Prunus persicaPrupe.2G238500PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATEDPp02+View
Prunus persicaPrupe.6G071600PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATEDPp06-View
Pisum sativumPsat7g210840Nucleic acid binding protein NABPchr7LG7+View
Papaver somniferumPSO339G3390NC_039366.1+View
Papaver somniferumPSO063G3242NC_039364.1+View
Populus trichocarpaPotri.010G201100PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDChr10-View
Populus trichocarpaPotri.001G243400PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDChr01+View
Populus trichocarpaPotri.009G034900PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDChr09+View
Populus trichocarpaPotri.008G058300PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATEDChr08+View
Phaseolus vulgarisPhvul.011G062200PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATEDChr11-View
Quercus lobataQL01p0306411-View
Quercus lobataQL08p0606318+View
Rosa chinensisRcHm_v2.0_Chr1g0368031RcHm_v2.0_Chr1+View
Rhododendron simsiiRhsim01G0231000chr01+View
Rhododendron simsiiRhsim09G0167400chr09+View
Rhododendron simsiiRhsim13G0078100chr13-View
Salix brachistaSabra09G0024900GWHAAZH00000009+View
Salix brachistaSabra08G0042900GWHAAZH00000008+View
Salix brachistaSabra10G0155100GWHAAZH00000010-View
Sechium eduleSed0024049LG04+View
Sechium eduleSed0004941LG07+View
Sechium eduleSed0018439LG05+View
Solanum lycopersicumSolyc06g005670.4Pumilio-like protein 1 (AHRD V3.3 *** A0A2G2Z7W6_CAPAN)SL4.0ch06+View
Solanum lycopersicumSolyc06g076340.3Pumilio-like protein 1 (AHRD V3.3 *** A0A2G2WNK2_CAPBA)SL4.0ch06+View
Schrenkiella parvulaSp4g11960PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATEDch4-6+View
Solanum pennelliiSopen06g032750Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 1 (PUM1) | FUNCTIONS IN: RNA binding, binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: cultured cell | CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP , Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 3Spenn-ch06+View
Solanum pennelliiSopen06g001650Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 1 (PUM1) | FUNCTIONS IN: RNA binding, binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: cultured cell | CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP , Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 3Spenn-ch06+View
Solanum pennelliiSopen04g005760Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 1 (PUM1) | FUNCTIONS IN: RNA binding, binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: cultured cell | CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP , Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 3Spenn-ch04-View
Solanum tuberosumPGSC0003DMG400030327PumilioST4.03ch06+View
Solanum tuberosumPGSC0003DMG400002143PumilioST4.03ch06-View
Selenicereus undatusHund16066Scaffold_33677-View
Selenicereus undatusHund18893Scaffold_33675-View
Selenicereus undatusHund04928Scaffold_19641-View
Selenicereus undatusHund13786Scaffold_33679+View
Trochodendron aralioidesTAR633G2293group2-View
Trochodendron aralioidesTAR636G1527group1+View
Trochodendron aralioidesTAR369G0784group18-View
Theobroma cacaoThecc.10G037700Pumilio 2Chromosome_10+View
Theobroma cacaoThecc.09G317200Pumilio 2Chromosome_9-View
Tarenaya hasslerianaTHA.LOC104810760pumilio homolog 2-likeNW_010965304.1+View
Tarenaya hasslerianaTHA.LOC104810041pumilio homolog 3-likeNW_010965122.1+View
Tarenaya hasslerianaTHA.LOC104826314pumilio homolog 2-likeNW_010967707.1-View
Trifolium pratenseTPR.G23618Tp57577_TGAC_v2_LG3-View
Tripterygium wilfordiiTWI63G0047NC_052240.1+View
Tripterygium wilfordiiTWI79G1132NC_052238.1-View
Tripterygium wilfordiiTWI31G0953NC_052233.1-View
Vaccinium macrocarponvmacro03039Similar to APUM1: Pumilio homolog 1 (Arabidopsis thaliana OX%3D3702)chr9_Vaccinium_macrocarpon_Stevens_v1-View
Vaccinium macrocarponvmacro14552Similar to APUM2: Pumilio homolog 2 (Arabidopsis thaliana OX%3D3702)chr7_Vaccinium_macrocarpon_Stevens_v1+View
Vaccinium macrocarponvmacro10221Similar to APUM2: Pumilio homolog 2 (Arabidopsis thaliana OX%3D3702)chr8_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo1127G0541CM024076.1-View
Vigna mungoVMungo0647G0740CM024073.1+View
Vitis viniferaGSVIVG01024919001chr6+View
Vitis viniferaGSVIVG01016507001chr13+View