Anchorpoints
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Aethionema arabicum | Aa31LG3G8710 | LG-3 | - | View | |
| Acer truncatum | Atru.chr1.458 | chr1 | + | View | |
| Actinidia chinensis | Actinidia32860 | Lachesis_group22 | + | View | |
| Actinidia chinensis | Actinidia34112 | Lachesis_group3 | - | View | |
| Arabidopsis lyrata | AL8G26680 | scaffold_8 | - | View | |
| Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.TEHT7Q | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | arahy.Tifrunner.gnm1.Arahy.05 | - | View |
| Arabidopsis thaliana | AT5G52290 | shortage in chiasmata 1 Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility. SHORTAGE IN CHIASMATA 1 (SHOC1)%3B Has 68 Blast hits to 59 proteins in 25 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 8%3B Fungi - 4%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink). | Chr5 | - | View |
| Amborella trichopoda | ATR0680G156 | AmTr_v1.0_scaffold00009 | + | View | |
| Brassica carinata | BcaC01g06176 | ChrC01 | - | View | |
| Brassica napus | C03p18410 | C03 | + | View | |
| Brassica oleracea | BolC3t14238H | C3 | + | View | |
| Beta vulgaris | EL10Ac3g05643 | Chr3_EL10_PGA_scaffold7 | + | View | |
| Cannabis sativa | CANSAT21G2370 | NC_044374.1 | - | View | |
| Corylus avellana | Haze_13709 | Similar to SHOC1: Protein SHORTAGE IN CHIASMATA 1 (Arabidopsis thaliana OX%3D3702) | 5 | + | View |
| Coffea canephora | Cc02_g02990 | Putative shortage in chiasmata 1 | chr2 | + | View |
| Citrus clementina | Ciclev10006492m.g | scaffold_9 | - | View | |
| Ceratophyllum demersum | CDE08G0179 | 6 | - | View | |
| Carpinus fangiana | Cfa008319 | Cfa03 | - | View | |
| Cardamine hirsuta | CARHR265270 | Shortage in chiasmata 1 | Chr8 | - | View |
| Carya illinoinensis | CiPaw.04G071000 | PTHR35764//PTHR35764:SF1 - FAMILY NOT NAMED // SHORTAGE IN CHIASMATA 1 | Chr04 | - | View |
| Corchorus olitorius | COL.COLO4_14309 | hypothetical protein | AWUE01015408.1 | - | View |
| Carica papaya | Cpa.g.sc107.52 | supercontig_107 | - | View | |
| Chenopodium quinoa | AUR62021193 | Protein of unknown function | C_Quinoa_Scaffold_1783 | + | View |
| Chenopodium quinoa | AUR62015985 | Protein of unknown function | C_Quinoa_Scaffold_3256 | + | View |
| Capsella rubella | Carub.0008s1239 | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | scaffold_8 | - | View |
| Daucus carota | DCAR_018198 | hypothetical protein | DCARv2_Chr5 | - | View |
| Davidia involucrata | Dinv28442 | GWHABJS00000004 | + | View | |
| Durio zibethinus | Duzib068G1336 | The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon | NW_019167838.1 | + | View |
| Erigeron canadensis | ECA232G1470 | Conyza_canadensis_scaffold:2 | + | View | |
| Erythranthe guttata | Migut.F00340 | scaffold_6 | + | View | |
| Eutrema salsugineum | Thhalv10015364m.g | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | scaffold_2 | + | View |
| Fragaria x ananassa | FAN03G0333 | PTHR35764//PTHR35764:SF1 - FAMILY NOT NAMED // SHORTAGE IN CHIASMATA 1 | Fvb7-3 | + | View |
| Fragaria x ananassa | FAN01G1040 | PTHR35764//PTHR35764:SF1 - FAMILY NOT NAMED // SHORTAGE IN CHIASMATA 1 | Fvb7-4 | + | View |
| Fragaria x ananassa | FAN06G0670 | Fvb7-2 | - | View | |
| Fragaria x ananassa | FAN06G0715 | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | Fvb7-2 | - | View |
| Fragaria x ananassa | FAN03G0790 | Fvb7-3 | + | View | |
| Fragaria vesca | FvH4_7g29470 | Fvb7 | - | View | |
| Gossypium hirsutum | Gohir.A12G257850 | A12 | + | View | |
| Gossypium hirsutum | Gohir.D12G259200 | D12 | + | View | |
| Glycine max | Glyma.09G139400 | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | Gm09 | - | View |
| Gossypium raimondii | Gorai.008G277600 | Chr08 | + | View | |
| Hydrangea macrophylla | Hma1.2p1_0270F.1_g108020 | Hma1.2p1_0270F.1 | + | View | |
| Lupinus albus | Lalb_Chr19g0130841 | Lalb_Chr19 | + | View | |
| Lotus japonicus | Lj2g0003134 | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | chr2 | - | View |
| Lactuca sativa | Lsat_1_v5_gn_9_55980 | Lsat_1_v8_lg_9 | - | View | |
| Magnolia biondii | MBI17_g46440_MAGBIO | AED:0.44 | Chr17 | - | View |
| Malus domestica | MD07G1268700 | shortage in chiasmata 1 | Chr07 | - | View |
| Malus domestica | MD01G1200800 | shortage in chiasmata 1 | Chr01 | - | View |
| Manihot esculenta | Manes.06G147100 | Chromosome06 | - | View | |
| Nelumbo nucifera | Nn6g33500 | chr6 | + | View | |
| Olea europaea | Oeu056255.1 | scaffold716 | - | View | |
| Punica granatum | PGR142G3926 | NC_045128.1 | + | View | |
| Prunus persica | Prupe.2G294300 | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | Pp02 | - | View |
| Populus trichocarpa | Potri.012G141100 | Chr12 | - | View | |
| Phaseolus vulgaris | Phvul.004G117000 | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | Chr04 | - | View |
| Quercus lobata | QL09p014214 | 9 | + | View | |
| Rosa chinensis | RcHm_v2.0_Chr1g0377251 | RcHm_v2.0_Chr1 | - | View | |
| Rhododendron simsii | Rhsim03G0180800 | chr03 | - | View | |
| Salvia bowleyana | SalBow4G2278 | GWHASIU00000008 | + | View | |
| Salix brachista | Sabra12G0106200 | GWHAAZH00000012 | - | View | |
| Simmondsia chinensis | Sc13g0008650 | GWHAASQ00000013 | - | View | |
| Sechium edule | Sed0022815 | LG05 | + | View | |
| Solanum lycopersicum | Solyc03g025820.3 | shortage in chiasmata 1 (AHRD V3.3 *** AT5G52290.1) | SL4.0ch03 | + | View |
| Schrenkiella parvula | Sp6g14550 | PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 | ch6-6 | - | View |
| Solanum pennellii | Sopen03g004630 | Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility. | SHORTAGE IN CHIASMATA 1 (SHOC1) | Spenn-ch03 | + | View |
| Solanum tuberosum | PGSC0003DMG400014341 | SHOC1 (SHORTAGE IN CHIASMATA 1) | ST4.03ch03 | - | View |
| Selenicereus undatus | Hund11747 | Scaffold_33679 | + | View | |
| Trochodendron aralioides | TAR375G0314 | group15 | - | View | |
| Theobroma cacao | Thecc.03G176600 | Shortage in chiasmata 1 | Chromosome_3 | - | View |
| Tarenaya hassleriana | THA.LOC104800252 | uncharacterized protein LOC104800252 | NW_010969135.1 | + | View |
| Tripterygium wilfordii | TWI23G0169 | NC_052239.1 | + | View | |
| Vigna mungo | VMungo0464G1636 | CM024077.1 | - | View |