Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold92G28208scaffold92+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG7G15640LG-7-View
Acer truncatumAtru.chr5.3307chr5-View
Acer truncatumAtru.chr13.261chr13+View
Actinidia chinensisActinidia23589Lachesis_group23-View
Actinidia chinensisActinidia31251Lachesis_group16-View
Avicennia marinaMSTRG.1179ScioBoG_102833_HRSCAF_103052+View
Avicennia marinaMSTRG.5449ScioBoG_102838_HRSCAF_103081-View
Amaranthus hybridusAh.01g008500AmaHy_arrow1_Scaffold_1+View
Amaranthus hybridusAh.01g022900AmaHy_arrow1_Scaffold_1-View
Aquilegia oxysepalaAqoxy6G02283CHR06-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.B5LLG6PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDarahy.Tifrunner.gnm1.Arahy.16+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.F25TPAPTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDarahy.Tifrunner.gnm1.Arahy.03-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.X1IMZBPTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDarahy.Tifrunner.gnm1.Arahy.13+View
Arabidopsis thalianaAT2G20990synaptotagmin A Encodes a plasma membrane localized protein with similarity to synaptotagmins%2C a class of membrane trafficking proteins. SYT1 is expressed in all tissues. Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance. SYT1 probably plays a role in membrane repair such as membrane resealing after freezing induced damage. Regulates endocytosis endosome recycling at the plasma membrane%2C but not membrane traffic along the secretory pathway. synaptotagmin A (SYTA)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: in 7 processes%3B LOCATED IN: endosome%2C plasma membrane%2C vacuole%2C membrane%3B EXPRESSED IN: whole plant%2C guard cell%2C cultured cell%2C callus%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029)%2C C2 calcium/lipid-binding domain%2C CaLB (InterPro:IPR008973)%2C C2 region (InterPro:IPR020477)%2C C2 calcium-dependent membrane targeting (InterPro:IPR000008)%3B BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G20080.1)%3B Has 7068 Blast hits to 5182 proteins in 270 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4491%3B Fungi - 774%3B Plants - 1307%3B Viruses - 0%3B Other Eukaryotes - 496 (source: NCBI BLink).Chr2+View
Beta vulgarisEL10Ac9g21392PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDChr9_EL10_PGA_scaffold8+View
Camellia sinensis var. sinensisCSS0029981PREDICTED: synaptotagmin-2 [Vitis vinifera]Chr4+View
Camellia sinensis var. sinensisCSS0008508PREDICTED: synaptotagmin-2-like [Nelumbo nucifera]Chr6-View
Capsicum annuumCAN.G588.69PGAv.1.6.scaffold588-View
Cannabis sativaCANSAT25G3009NC_044370.1-View
Cicer arietinum L.Ca_19063_v3Ca_LG6_v3-View
Corylus avellanaHaze_22660Similar to SYT2: Synaptotagmin-2 (Arabidopsis thaliana OX%3D3702)3-View
Corylus avellanaHaze_02150Similar to SYT1: Synaptotagmin-1 (Arabidopsis thaliana OX%3D3702)1+View
Coffea canephoraCc10_g01460Putative Extended synaptotagmin-1chr10+View
Coffea canephoraCc02_g16250Putative Extended synaptotagmin-1chr2+View
Citrus clementinaCiclev10000806m.gscaffold_5-View
Citrus clementinaCiclev10028159m.gscaffold_8+View
Ceratophyllum demersumCDE05G01593+View
Cardamine hirsutaCARHR111870Synaptotagmin AChr4+View
Carya illinoinensisCiPaw.05G081200PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDChr05-View
Carya illinoinensisCiPaw.06G122800KOG1012 - Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domainChr06+View
Carya illinoinensisCiPaw.08G067300KOG1012 - Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domainChr08-View
Carya illinoinensisCiPaw.07G147500KOG1012 - Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domainChr07+View
Citrullus lanatusClCG02G011870Synaptotagmin-7CG_Chr02-View
Citrullus lanatusClCG02G004170Synaptotagmin-7CG_Chr02+View
Citrullus lanatusClCG08G014200Synaptotagmin-7CG_Chr08+View
Cucumis meloMELO3C013361.2synaptotagmin-2-likechr01+View
Cucumis meloMELO3C020813.2LOW QUALITY PROTEIN: synaptotagmin-1-likechr11+View
Corchorus olitoriusCOL.COLO4_17323C2 calcium-dependent membrane targetingAWUE01016328.1-View
Carica papayaCpa.g.sc37.147supercontig_37+View
Carica papayaCpa.g.sc26.308supercontig_26+View
Chenopodium quinoaAUR62010052SYT1: Synaptotagmin-1C_Quinoa_Scaffold_1257+View
Chenopodium quinoaAUR62013043SYT1: Synaptotagmin-1C_Quinoa_Scaffold_1040+View
Cucumis sativus L.CsaV3_7G000940synaptotagmin-2-likechr7-View
Cucumis sativus L.CsaV3_2G016040LOW QUALITY PROTEIN: synaptotagmin-1-likechr2-View
Daucus carotaDCAR_013880hypothetical proteinDCARv2_Chr4+View
Daucus carotaDCAR_009493hypothetical proteinDCARv2_Chr3-View
Daucus carotaDCAR_003165hypothetical proteinDCARv2_Chr1-View
Davidia involucrataDinv14099GWHABJS00000005+View
Davidia involucrataDinv39535GWHABJS00000011-View
Davidia involucrataDinv41948GWHABJS00000002-View
Durio zibethinusDuzib041G0310NW_019167826.1+View
Durio zibethinusDuzib093G0688NW_019167937.1-View
Durio zibethinusDuzib052G0637NW_019167849.1-View
Eucalyptus grandisEucgr.I01409Chr09-View
Erythranthe guttataMigut.B00087scaffold_2+View
Erythranthe guttataMigut.C00857scaffold_3-View
Fragaria x ananassaFAN20G0497PTHR10774//PTHR10774:SF50 - EXTENDED SYNAPTOTAGMIN-RELATED // SYNAPTOTAGMIN-1-RELATEDFvb2-3-View
Fragaria x ananassaFAN27G3047PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDFvb2-1+View
Fragaria x ananassaFAN20G0588PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDFvb2-3-View
Fragaria x ananassaFAN15G3521PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDFvb2-4-View
Fragaria x ananassaFAN24G2460PTHR10774//PTHR10774:SF50 - EXTENDED SYNAPTOTAGMIN-RELATED // SYNAPTOTAGMIN-1-RELATEDFvb2-2-View
Fragaria vescaFvH4_2g38220PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDFvb2+View
Fragaria vescaFvH4_2g01300PTHR10774//PTHR10774:SF50 - EXTENDED SYNAPTOTAGMIN-RELATED // SYNAPTOTAGMIN-1-RELATEDFvb2+View
Gossypium hirsutumGohir.D05G188200PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDD05+View
Gossypium hirsutumGohir.A05G185400PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDA05+View
Glycine maxGlyma.12G032400PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDGm12-View
Glycine maxGlyma.06G003700PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDGm06+View
Glycine maxGlyma.11G107300PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDGm11-View
Gossypium raimondiiGorai.009G193500Chr09+View
Helianthus annuusHanXRQChr17g0544231Putative C2 domain; Synaptotagmin-like mitochondrial-lipid-binding domainHanXRQChr17+View
Hydrangea macrophyllaHma1.2p1_0163F.1_g072380Hma1.2p1_0163F.1-View
Hydrangea macrophyllaHma1.2p1_0032F.1_g019440Hma1.2p1_0032F.1+View
Lupinus albusLalb_Chr03g0025141PTHR10774//PTHR10774:SF50 - EXTENDED SYNAPTOTAGMIN-RELATED // SYNAPTOTAGMIN-1-RELATEDLalb_Chr03-View
Lupinus albusLalb_Chr23g0265031PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDLalb_Chr23+View
Lupinus albusLalb_Chr19g0139151PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDLalb_Chr19+View
Lotus japonicusLj1g0022025PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDchr1-View
Lotus japonicusLj3g0021724PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDchr3-View
Lonicera japonicaLj5A180G49GWHAAZE00000005+View
Lonicera japonicaLj4C799T2GWHAAZE00000004-View
Lonicera japonicaLj4A21T60GWHAAZE00000004+View
Lactuca sativaLsat_1_v5_gn_3_46701PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDLsat_1_v8_lg_3-View
Malus domesticaMD05G1120700Calcium-dependent lipid-binding (CaLB domain) family proteinChr05-View
Malus domesticaMD08G1010600Calcium-dependent lipid-binding (CaLB domain) family proteinChr08+View
Malus domesticaMD15G1010700Calcium-dependent lipid-binding (CaLB domain) family proteinChr15+View
Manihot esculentaManes.05G145400Chromosome05+View
Manihot esculentaManes.04G075000Chromosome04+View
Medicago truncatulaMedtr4g073400calcium-dependent lipid-binding (CaLB domain) family proteinchr4+View
Nelumbo nuciferaNn6g32003chr6+View
Nelumbo nuciferaNn5g30767chr5-View
Olea europaeaOeu008326.1scaffold1302-View
Olea europaeaOeu055664.1chr15-View
Oryza sativa ssp. japonicaOs09g0538800Similar to Synaptotagmin C. Similar to calcium lipid binding protein-like.chr09-View
Petunia axillarisPeaxi162Scf00362g00720Calcium-dependent lipid-binding (CaLB domain) family proteinPeaxi162Scf00362+View
Petunia axillarisPeaxi162Scf01221g00043Calcium-dependent lipid-binding (CaLB domain) family proteinPeaxi162Scf01221-View
Punica granatumPGR142G0132NC_045128.1+View
Punica granatumPGR031G1596NC_045127.1+View
Prunus persicaPrupe.1G363200PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDPp01+View
Prunus persicaPrupe.8G164600Pp08-View
Papaver somniferumPSO170G0323NC_039360.1-View
Papaver somniferumPSO675G8975NC_039358.1+View
Populus trichocarpaPotri.005G241700PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDChr05-View
Populus trichocarpaPotri.002G019800PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDChr02+View
Populus trichocarpaPotri.004G174600PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDChr04-View
Populus trichocarpaPotri.009G134200PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDChr09-View
Phaseolus vulgarisPhvul.009G119800PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDChr09+View
Phaseolus vulgarisPhvul.011G035100PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATEDChr11-View
Quercus lobataQL11p05003811-View
Quercus lobataQL02p012108CM012294-View
Rosa chinensisRcHm_v2.0_Chr6g0303161RcHm_v2.0_Chr6-View
Rosa chinensisRcHm_v2.0_Chr6g0252191RcHm_v2.0_Chr6+View
Rhododendron simsiiRhsim05G0060700chr05+View
Salvia bowleyanaSalBow1G6714GWHASIU00000001+View
Salix brachistaSabra09G0103900GWHAAZH00000009-View
Salix brachistaSabra05G0187100GWHAAZH00000005-View
Simmondsia chinensisSc18g0006470GWHAASQ00000018+View
Sechium eduleSed0000274LG05+View
Sechium eduleSed0015675LG01+View
Sapria himalayanaSHI05727scaffold8_16897533-View
Solanum lycopersicumSolyc01g111520.3Calcium-dependent lipid-binding (CaLB domain) family protein (AHRD V3.3 *** A0A1P8BD17_ARATH)SL4.0ch01-View
Schrenkiella parvulaSp4g00180PTHR10774//PTHR10774:SF50 - EXTENDED SYNAPTOTAGMIN-RELATED // SYNAPTOTAGMIN-1-RELATEDch4-1+View
Solanum pennelliiSopen01g053560Encodes a plasma membrane localized protein with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues. Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance. SYT1 probably plays a role in membrane repair such as membrane resealing after freezing induced damage. Regulates endocytosis endosome recycling at the plasma membrane, but not membrane traffic along the secretory pathway. | synaptotagmin A (SYTA) | CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein , C2 calcium/lipid-binding domain, CaLB , C2 region , C2 calcium-dependent membrane targeting | BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein .Spenn-ch01-View
Solanum tuberosumPGSC0003DMG401006174Plant synaptotagminST4.03ch01-View
Selenicereus undatusHund06430Scaffold_33676-View
Selenicereus undatusHund00026Scaffold_33678+View
Trochodendron aralioidesTAR376G0832group14-View
Trochodendron aralioidesTAR628G0892group5-View
Theobroma cacaoThecc.02G061200Synaptotagmin AChromosome_2+View
Theobroma cacaoThecc.08G046700Calcium-dependent lipid-binding (CaLB domain) family proteinChromosome_8-View
Tarenaya hasslerianaTHA.LOC104824767synaptotagmin-1NW_010966933.1+View
Trifolium pratenseTPR.G38472Tp57577_TGAC_v2_LG7-View
Trifolium pratenseTPR.G39208Tp57577_TGAC_v2_LG3+View
Tripterygium wilfordiiTWI79G0627NC_052238.1+View
Tripterygium wilfordiiTWI56G0143NC_052242.1-View
Tripterygium wilfordiiTWI31G0242NC_052233.1+View
Utricularia gibbaunitig_0.g819unitig_0-View
Vaccinium macrocarponvmacro17355Similar to SYT1: Synaptotagmin-1 (Arabidopsis thaliana OX%3D3702)chr3_Vaccinium_macrocarpon_Stevens_v1-View
Vaccinium macrocarponvmacro04367Similar to SYT2: Synaptotagmin-2 (Arabidopsis thaliana OX%3D3702)chr12_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo1309G0404CM024072.1-View
Vigna mungoVMungo1127G0105CM024076.1-View
Vitis viniferaGSVIVG01024034001chr3-View
Zea maysZm00001eb332000Zm00001e035989 Synaptotagmin-27+View