Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold413G51185scaffold413+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG5G12470LG-5-View
Acer truncatumAtru.chr8.287chr8-View
Actinidia chinensisActinidia17556Lachesis_group21-View
Actinidia chinensisActinidia26227Lachesis_group3-View
Arabidopsis lyrataAL3G11110scaffold_3-View
Amaranthus hybridusAh.10g031680Polypyrimidine tract-binding protein homolog 1AmaHy_arrow1_Scaffold_10-View
Aquilegia oxysepalaAqoxy3G03436CHR03-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.0CS5BRK14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)arahy.Tifrunner.gnm1.Arahy.10-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.X0E42Narahy.Tifrunner.gnm1.Arahy.20-View
Arabidopsis thalianaAT3G01150polypyrimidine tract-binding protein 1 Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. polypyrimidine tract-binding protein 1 (PTB1)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: pollen germination%2C regulation of RNA splicing%2C regulation of translation%3B LOCATED IN: nucleus%2C cytoplasmic mRNA processing body%2C cytoplasm%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 2 (TAIR:AT5G53180.1)%3B Has 1792 Blast hits to 964 proteins in 150 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1278%3B Fungi - 41%3B Plants - 303%3B Viruses - 0%3B Other Eukaryotes - 170 (source: NCBI BLink).Chr3+View
Amborella trichopodaATR0564G528AmTr_v1.0_scaffold00010-View
Brassica napusA05p44810A05-View
Brassica napusC09p75400C09-View
Brassica oleraceaBolC5t35120HC5+View
Brassica rapaBraA05t23176ZA05+View
Beta vulgarisEL10Ac2g02997K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Chr2_EL10_PGA_scaffold6-View
Camellia sinensis var. sinensisCSS0033630Polypyrimidine tract-binding protein-1-like protein [Morus notabilis]Chr2-View
Camellia sinensis var. sinensisCSS0023463PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Prunus mume]Chr1+View
Cannabis sativaCANSAT64G0124NC_044379.1-View
Corylus avellanaHaze_14510Similar to PTB: Polypyrimidine tract-binding protein homolog 1 (Arabidopsis thaliana OX%3D3702)5+View
Coffea canephoraCc07_g03500Polypyrimidine tract binding protein, putativechr7-View
Citrus clementinaCiclev10011680m.gscaffold_6-View
Carpinus fangianaCfa007576Cfa03-View
Cardamine hirsutaCARHR075900Polypyrimidine tract-bindingChr3-View
Carya illinoinensisCiPaw.04G016000K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Chr04+View
Carya illinoinensisCiPaw.03G025000K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Chr03+View
Chenopodium quinoaAUR62034430PTB: Polypyrimidine tract-binding protein homolog 1C_Quinoa_Scaffold_2742-View
Capsella rubellaCarub.0003s0101K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)scaffold_3-View
Daucus carotaDCAR_011087hypothetical proteinDCARv2_Chr3+View
Davidia involucrataDinv11515GWHABJS00000012+View
Durio zibethinusDuzib187G0861NW_019167860.1-View
Durio zibethinusDuzib264G0800NW_019167960.1-View
Eucalyptus grandisEucgr.J01358Chr10-View
Eutrema salsugineumThhalv10020700m.gKOG1190 - Polypyrimidine tract-binding proteinscaffold_13+View
Fragaria x ananassaFAN09G4689K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Fvb6-2-View
Fragaria x ananassaFAN05G4163K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Fvb6-3+View
Fragaria x ananassaFAN02G1974K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Fvb6-4+View
Fragaria x ananassaFAN14G4918K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Fvb6-1-View
Gossypium hirsutumGohir.A05G367800K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)A05-View
Gossypium hirsutumGohir.A09G014400K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)A09+View
Gossypium hirsutumGohir.D04G047500K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)D04+View
Gossypium hirsutumGohir.D09G012900K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)D09+View
Glycine maxGlyma.18G261000KOG0131//KOG1190 - Splicing factor 3b, subunit 4 // Polypyrimidine tract-binding proteinGm18-View
Gossypium raimondiiGorai.006G014900Chr06+View
Gossypium raimondiiGorai.012G052900Chr12+View
Lupinus albusLalb_Chr02g0159301K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Lalb_Chr02+View
Lotus japonicusLj1g0004442K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)chr1+View
Lotus japonicusLj2g0015851K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)chr2+View
Lonicera japonicaLju41A10G41GWHAAZE00000094+View
Malus domesticaMD09G1053000polypyrimidine tract-binding protein 1Chr09-View
Medicago truncatulaMedtr6g012590polypyrimidine tract-binding-like proteinchr6-View
Medicago truncatulaMedtr7g011070polypyrimidine tract-binding-like proteinchr7-View
Nelumbo nuciferaNn3g17283chr3-View
Nicotiana tabacumNitab4.5_0000568g0060Nucleotide-binding, alpha-beta plait, RNA recognition motif domainNitab4.5_0000568-View
Prunus persicaPrupe.3G265700K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Pp03+View
Pisum sativumPsat3g200200RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain)chr3LG5+View
Populus trichocarpaPotri.017G085400K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Chr17-View
Phaseolus vulgarisPhvul.008G037600K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Chr08-View
Phaseolus vulgarisPhvul.004G030300K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)Chr04+View
Quercus lobataQL02p082558CM012294-View
Rosa chinensisRcHm_v2.0_Chr2g0167691RcHm_v2.0_Chr2+View
Rhododendron simsiiRhsim08G0070500chr08-View
Rhododendron simsiiRhsim10G0036800chr10+View
Salix brachistaSabra17G0075400GWHAAZH00000017-View
Simmondsia chinensisSc10g0003490GWHAASQ00000010+View
Solanum lycopersicumSolyc02g088110.4Polypyrimidine tract-binding protein (AHRD V3.3 *** B6U4H8_MAIZE)SL4.0ch02-View
Schrenkiella parvulaSp3g00970K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB)ch3-1-View
Solanum pennelliiSopen02g032820Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. | POLYPYRIMIDINE TRACT-BINDING (PTB) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: pollen germination, regulation of RNA splicing, regulation of translation | LOCATED IN: nucleus, cytoplasmic mRNA processing body, cytoplasm | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 2Spenn-ch02-View
Solanum tuberosumPGSC0003DMG400001427Polypyrimidine tract-binding proteinST4.03ch02+View
Selenicereus undatusHund13200Scaffold_33679+View
Trochodendron aralioidesTAR622G0930group8-View
Trochodendron aralioidesTAR629G3422group0+View
Theobroma cacaoThecc.04G085000Polypyrimidine tract-binding protein 1Chromosome_4-View
Tarenaya hasslerianaTHA.LOC104821024polypyrimidine tract-binding protein homolog 1 isoform X1NW_010966372.1+View
Trifolium pratenseTPR.G33570Tp57577_TGAC_v2_LG6-View
Tripterygium wilfordiiTWI32G1171NC_052254.1-View
Tripterygium wilfordiiTWI34G1059NC_052235.1+View
Tripterygium wilfordiiTWI60G0678NC_052246.1-View
Vaccinium macrocarponvmacro05685Similar to PTB: Polypyrimidine tract-binding protein homolog 1 (Arabidopsis thaliana OX%3D3702)chr12_Vaccinium_macrocarpon_Stevens_v1+View
Vigna mungoVMungo1383G0034CM024070.1+View
Vitis viniferaGSVIVG01011438001chr14-View