Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold287G47209scaffold287+View
SGA_v2.0_scaffold52G19056scaffold52-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatumAtru.chr8.683chr8+View
Acer truncatumAtru.chr11.1520chr11-View
Arabidopsis lyrataAL2G27940scaffold_2-View
Avicennia marinaMSTRG.2964ScioBoG_102835_HRSCAF_103059-View
Amaranthus hybridusAh.10g038340WPP domain-interacting tail-anchored protein 1AmaHy_arrow1_Scaffold_10+View
Aquilegia oxysepalaAqoxy3G00575CHR03+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.AT6RDFPTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1arahy.Tifrunner.gnm1.Arahy.14+View
Arabidopsis thalianaAT1G68910WPP domain-interacting protein 2 Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390%2C WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes%2C including nucleocytoplasmic transport%2C spindle formation%2C and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins%2C structurally similar%2C yet clearly distinct from the WIP family%2C that is required for RanGAP nuclear envelop association in root tip cells. WPP domain-interacting protein 2 (WIT2)%3B BEST Arabidopsis thaliana protein match is: WPP domain-interacting protein 1 (TAIR:AT5G11390.1)%3B Has 80562 Blast hits to 45263 proteins in 2523 species: Archae - 1211%3B Bacteria - 12854%3B Metazoa - 37741%3B Fungi - 6730%3B Plants - 4174%3B Viruses - 347%3B Other Eukaryotes - 17505 (source: NCBI BLink). WPP domain-interacting protein 2 (WIT2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: WPP domain-interacting protein 1 (TAIR:AT5G11390.1).Chr1-View
Brassica napusA02p15490A02-View
Brassica rapaBraA02t06610ZA02-View
Camellia sinensis var. sinensisCSS0034394PREDICTED: WPP domain-interacting tail-anchored protein 1 [Vitis vinifera]Chr2+View
Capsicum annuumCAN.G93.45PGAv.1.6.scaffold93-View
Cannabis sativaCANSAT64G2265NC_044379.1-View
Corylus avellanaHaze_14356Similar to WIT1: WPP domain-interacting tail-anchored protein 1 (Arabidopsis thaliana OX%3D3702)5-View
Coffea canephoraCc11_g11350Putative WPP domain-interacting tail-anchored protein 2chr11-View
Coffea canephoraCc07_g04670Putative WPP domain-interacting tail-anchored protein 1chr7+View
Carpinus fangianaCfa007718Cfa03+View
Carya illinoinensisCiPaw.03G080900PTHR35705//PTHR35705:SF1 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Chr03-View
Carya illinoinensisCiPaw.04G050900PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Chr04-View
Citrullus lanatusClCG07G016160TropomyosinCG_Chr07+View
Chenopodium quinoaAUR62009452WIT1: WPP domain-interacting tail-anchored protein 1C_Quinoa_Scaffold_3674-View
Chenopodium quinoaAUR62023133WIT1: WPP domain-interacting tail-anchored protein 1C_Quinoa_Scaffold_1189-View
Capsella rubellaCarub.0002s1555PTHR35705//PTHR35705:SF2 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2scaffold_2-View
Davidia involucrataDinv34891GWHABJS00000012-View
Durio zibethinusDuzib251G0850The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codonNW_019167971.1-View
Durio zibethinusDuzib248G1050NW_019168048.1+View
Durio zibethinusDuzib211G0355NW_019168049.1+View
Erigeron canadensisECA238G2894Conyza_canadensis_scaffold:6-View
Eucalyptus grandisEucgr.J01428Chr10+View
Erythranthe guttataMigut.L01147scaffold_12-View
Erythranthe guttataMigut.H00573scaffold_8-View
Fragaria x ananassaFAN05G4529PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Fvb6-3-View
Fragaria x ananassaFAN09G1126PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Fvb6-2-View
Fragaria x ananassaFAN07G0888PTHR35705:SF2 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2Fvb4-4+View
Fragaria vescaFvH4_6g46070PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Fvb6+View
Glycine maxGlyma.18G276900PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Gm18+View
Glycine maxGlyma.19G037700PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Gm19+View
Glycine maxGlyma.13G050900PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Gm13-View
Gossypium raimondiiGorai.013G098800Chr13+View
Helianthus annuusHanXRQChr07g0200081Uncharacterized protein, partly conserved in plant genome(s), supported by expression dataHanXRQChr07+View
Lupinus albusLalb_Chr21g0318111PTHR35705//PTHR35705:SF1 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Lalb_Chr21-View
Lupinus albusLalb_Chr10g0099321PTHR35705//PTHR35705:SF2 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2Lalb_Chr10+View
Lotus japonicusLj1g0012113PTHR35705//PTHR35705:SF1 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1chr1-View
Lotus japonicusLj2g0020384PTHR35705//PTHR35705:SF1 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1chr2-View
Lonicera japonicaLj4P127T26GWHAAZE00000004+View
Lonicera japonicaLj6A772G33GWHAAZE00000006-View
Lactuca sativaLsat_1_v5_gn_2_86020Lsat_1_v8_lg_2-View
Magnolia biondiiMBI15_g42002_MAGBIOAED:0.04Chr15+View
Magnolia biondiiMBI14_g08213_MAGBIOAED:0.06Chr14+View
Malus domesticaMD17G1067700WPP domain-interacting protein 1Chr17-View
Malus domesticaMD09G1077300WPP domain-interacting protein 1Chr09-View
Manihot esculentaManes.01G105100Chromosome01+View
Manihot esculentaManes.02G061500Chromosome02+View
Medicago truncatulaMedtr7g017690WPP domain interacting tail-anchored proteinchr7+View
Olea europaeaOeu062192.1chr10+View
Olea europaeaOeu033419.1chr2-View
Punica granatumPGR042G0929NC_045130.1-View
Punica granatumPGR119G2480NC_045132.1-View
Prunus persicaPrupe.3G246700PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Pp03+View
Populus trichocarpaPotri.010G135900PTHR35705//PTHR35705:SF2 - FAMILY NOT NAMED // WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 2Chr10-View
Populus trichocarpaPotri.004G111350PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Chr04-View
Phaseolus vulgarisPhvul.004G045500PTHR35705:SF1 - WPP DOMAIN-INTERACTING TAIL-ANCHORED PROTEIN 1Chr04+View
Phaseolus vulgarisPhvul.008G024000Chr08-View
Rosa chinensisRcHm_v2.0_Chr2g0164391RcHm_v2.0_Chr2+View
Rhododendron simsiiRhsim08G0078700chr08+View
Salvia bowleyanaSalBow1G0101GWHASIU00000001-View
Salix brachistaSabra04G0073100GWHAAZH00000004+View
Salix brachistaSabra17G0089400GWHAAZH00000017+View
Simmondsia chinensisSc04g0007270GWHAASQ00000004+View
Simmondsia chinensisSc10g0000490GWHAASQ00000010-View
Solanum lycopersicumSolyc02g065660.4WPP domain-interacting tail-anchored protein 2 (AHRD V3.3 *** A0A1J3JZ59_NOCCA)SL4.0ch02-View
Solanum pennelliiSopen02g015870Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells. | WPP domain-interacting protein 1 (WIT1) | BEST Arabidopsis thaliana protein match is: WPP domain-interacting protein 2Spenn-ch02-View
Solanum tuberosumPGSC0003DMG400026559Conserved gene of unknown functionST4.03ch02-View
Selenicereus undatusHund16254Scaffold_33677+View
Trochodendron aralioidesTAR629G3028group0-View
Theobroma cacaoThecc.04G110800WPP domain-interacting protein 1Chromosome_4+View
Tarenaya hasslerianaTHA.LOC104805537WPP domain-interacting tail-anchored protein 1-like isoform X1NW_010961290.1+View
Trifolium pratenseTPR.G15931Tp57577_TGAC_v2_LG3+View
Tripterygium wilfordiiTWI34G0100NC_052235.1-View
Utricularia gibbaunitig_52.g17630unitig_52+View
Vigna mungoVMungo0464G2033CM024077.1+View
Vigna mungoVMungo1383G1347CM024070.1-View