Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold58G20528scaffold58-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG7G14830LG-7+View
Aethionema arabicumAa31LG8G13650LG-8+View
Aethionema arabicumAa31LG6G16000LG-6+View
Acer truncatumAtru.chr5.3071chr5+View
Acer truncatumAtru.BG.67.pchr5-View
Actinidia chinensisActinidia00528Lachesis_group12-View
Actinidia chinensisActinidia27893Lachesis_group16+View
Actinidia chinensisActinidia17815Lachesis_group7+View
Arabidopsis lyrataAL4G10860scaffold_4-View
Arabidopsis lyrataAL7G11250scaffold_7-View
Avicennia marinaMSTRG.20080ScioBoG_26180_HRSCAF_26306-View
Avicennia marinaMSTRG.27697ScioBoG_94932_HRSCAF_95134-View
Avicennia marinaMSTRG.5400ScioBoG_102838_HRSCAF_103081+View
Amaranthus hybridusAh.01g019370Glycine-rich RNA-binding protein blt801 (Low temperature-responsive RNA-binding protein)AmaHy_arrow1_Scaffold_1-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.05X33FPF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)arahy.Tifrunner.gnm1.Arahy.07-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.T0DAJUPF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)arahy.Tifrunner.gnm1.Arahy.13+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.TCQK5LPF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)arahy.Tifrunner.gnm1.Arahy.03+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.SN2AINPF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)arahy.Tifrunner.gnm1.Arahy.17+View
Arabidopsis thalianaAT4G39260cold, circadian rhythm, and RNA binding 1 Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). cold%2C circadian rhythm%2C and RNA binding 1 (CCR1)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: response to zinc ion%2C response to salt stress%2C response to cold%2C circadian rhythm%2C innate immune response%3B LOCATED IN: nucleolus%2C cell wall%2C peroxisome%2C plasma membrane%2C chloroplast%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C glycine rich protein (InterPro:IPR015465)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: cold%2C circadian rhythm%2C and rna binding 2 (TAIR:AT2G21660.2)%3B Has 126 Blast hits to 126 proteins in 35 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 0%3B Fungi - 21%3B Plants - 62%3B Viruses - 0%3B Other Eukaryotes - 31 (source: NCBI BLink).Chr4-View
Arabidopsis thalianaAT2G21660cold, circadian rhythm, and rna binding 2 Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions%2C but%2C promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). cold%2C circadian rhythm%2C and rna binding 2 (CCR2)%3B FUNCTIONS IN: double-stranded DNA binding%2C RNA binding%2C single-stranded DNA binding%3B INVOLVED IN: in 12 processes%3B LOCATED IN: nucleus%2C chloroplast%2C peroxisome%2C cytoplasm%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C glycine rich protein (InterPro:IPR015465)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: cold%2C circadian rhythm%2C and RNA binding 1 (TAIR:AT4G39260.3)%3B Has 548 Blast hits to 547 proteins in 63 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 92%3B Fungi - 0%3B Plants - 453%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink).Chr2-View
Brassica carinataBcaC06g36135ChrC06+View
Brassica carinataBcaC07g41125ChrC07+View
Brassica carinataBcaB03g12255ChrB03-View
Brassica carinataBcaC02g08775ChrC02+View
Brassica carinataBcaNung01272Contig480+View
Brassica napusC01p00420C01-View
Brassica napusC03p77730C03-View
Brassica napusA01p00300A01-View
Brassica napusA09p58040A09+View
Brassica napusC08p41250C08+View
Brassica napusA08p23710A08+View
Brassica napusC07p07420C07-View
Brassica oleraceaBolC1t00047HC1-View
Brassica oleraceaBolC7t41158HC7-View
Brassica oleraceaBolC8t51691HC8+View
Brassica oleraceaBolC3t20031HC3-View
Brassica rapaBraA01t00037ZA01-View
Brassica rapaBraA09t41192ZA09+View
Brassica rapaBraA07t28248ZA07-View
Brassica rapaBraA08t34323ZA08+View
Beta vulgarisEL10Ac9g21721PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Chr9_EL10_PGA_scaffold8-View
Camellia sinensis var. sinensisCSS0035708unnamed protein product [Vitis vinifera]Chr4-View
Camellia sinensis var. sinensisCSS0018150PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]Chr3-View
Capsicum annuumCAN.G1412.11PGAv.1.6.scaffold1412+View
Cicer arietinum L.Ca_15365_v3Ca_LG5_v3-View
Cicer arietinum L.Ca_20878_v3Ca_LG6_v3+View
Coffea canephoraCc02_g17520Hypothetical proteinchr2-View
Carpinus fangianaCfa004992Cfa02-View
Cardamine hirsutaCARHR247430RNA-binding proteinChr7+View
Cardamine hirsutaCARHR106480RNA-binding proteinChr3+View
Cardamine hirsutaCARHR112650RNA-binding proteinChr4-View
Carya illinoinensisCiPaw.06G135000PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Chr06-View
Carya illinoinensisCiPaw.05G065000PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Chr05+View
Citrullus lanatusClCG11G004420Glycine-rich RNA-binding protein, putativeCG_Chr11-View
Carica papayaCpa.g.sc62.156supercontig_62+View
Chenopodium quinoaAUR62016740Glycine-rich RNA-binding protein GRP1AC_Quinoa_Scaffold_3670+View
Chenopodium quinoaAUR6201131433 kDa ribonucleoprotein, chloroplasticC_Quinoa_Scaffold_3333-View
Capsella rubellaCarub.0007s0118PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)scaffold_7-View
Capsella rubellaCarub.0004s0071PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)scaffold_4-View
Cucumis sativus L.CsaV3_2G014690Glycine-rich RNA binding proteinchr2+View
Daucus carotaDCAR_001576hypothetical proteinDCARv2_Chr1-View
Daucus carotaDCAR_003671hypothetical proteinDCARv2_Chr1-View
Davidia involucrataDinv42062GWHABJS00000002+View
Davidia involucrataDinv23516GWHABJS00000005-View
Durio zibethinusDuzib052G0372NW_019167849.1+View
Durio zibethinusDuzib132G1167NW_019167915.1-View
Erigeron canadensisECA236G3345Conyza_canadensis_scaffold:3+View
Erigeron canadensisECA234G1717Conyza_canadensis_scaffold:4+View
Erythranthe guttataMigut.B00230scaffold_2-View
Erythranthe guttataMigut.N01242scaffold_14+View
Eutrema salsugineumThhalv10000386m.gPTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM Ascaffold_15-View
Gossypium hirsutumGohir.D12G028500PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)D12+View
Gossypium hirsutumGohir.A12G029000PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)A12+View
Gossypium hirsutumGohir.A03G194700PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)A03+View
Gossypium hirsutumGohir.D02G215900PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)D02+View
Gossypium hirsutumGohir.A13G034000PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)A13-View
Gossypium hirsutumGohir.D13G032300PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)D13-View
Glycine maxGlyma.04G012700PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Gm04-View
Glycine maxGlyma.06G012600PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Gm06-View
Glycine maxGlyma.12G043000PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Gm12-View
Glycine maxGlyma.11G117300PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Gm11-View
Gossypium raimondiiGorai.005G243900Chr05+View
Gossypium raimondiiGorai.013G036800Chr13-View
Gossypium raimondiiGorai.008G029100Chr08+View
Helianthus annuusHanXRQChr16g0505631Putative nucleotide-binding alpha-beta plait domainHanXRQChr16-View
Hydrangea macrophyllaHma1.2p1_0066F.1_g036360Hma1.2p1_0066F.1-View
Lupinus albusLalb_Chr01g0002531PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Lalb_Chr01-View
Lupinus albusLalb_Chr03g0025651PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Lalb_Chr03-View
Lotus japonicusLj3g0007386PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)chr3-View
Lonicera japonicaLj5C196T12GWHAAZE00000005-View
Lonicera japonicaLj9A370T40GWHAAZE00000009+View
Lactuca sativaLsat_1_v5_gn_5_119120K13195 - cold-inducible RNA-binding protein (CIRBP)Lsat_1_v8_lg_5+View
Lactuca sativaLsat_1_v5_gn_7_91261PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Lsat_1_v8_lg_7+View
Malus domesticaMD10G1075500coldChr10-View
Manihot esculentaManes.17G101400Chromosome17+View
Nelumbo nuciferaNn5g29616chr5+View
Nicotiana tabacumNitab4.5_0000308g0150Nucleotide-binding, alpha-beta plait, RNA recognition motif domainNitab4.5_0000308+View
Olea europaeaOeu020749.1chr5-View
Petunia axillarisPeaxi162Scf00016g00739Glycine-rich RNA-binding proteinPeaxi162Scf00016-View
Petunia axillarisPeaxi162Scf00684g00327Glycine-rich RNA-binding proteinPeaxi162Scf00684-View
Petunia axillarisPeaxi162Scf00003g01226glycine-rich RNA-binding protein 2Peaxi162Scf00003-View
Punica granatumPGR042G2290NC_045130.1-View
Prunus persicaPrupe.8G096400PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Pp08-View
Populus trichocarpaPotri.004G155300K13195 - cold-inducible RNA-binding protein (CIRBP)Chr04+View
Populus trichocarpaPotri.009G116400PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Chr09+View
Phaseolus vulgarisPhvul.009G023700PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Chr09-View
Phaseolus vulgarisPhvul.011G045000PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)Chr11-View
Quercus lobataQL11p04396411+View
Rhododendron simsiiRhsim11G0177800chr11+View
Rhododendron simsiiRhsim05G0074000chr05-View
Salvia bowleyanaSalBow6G3505GWHASIU00000002-View
Salvia bowleyanaSalBow3G4446GWHASIU00000006-View
Salix brachistaSabra09G0089400GWHAAZH00000009+View
Salix brachistaSabra04G0103000GWHAAZH00000004+View
Simmondsia chinensisSc08g0000520GWHAASQ00000008+View
Simmondsia chinensisSc18g0004440GWHAASQ00000018-View
Sechium eduleSed0012011LG05-View
Sechium eduleSed0018809LG01-View
Solanum lycopersicumSolyc01g109660.2meloidogyne-induced giant cell protein DB275SL4.0ch01+View
Schrenkiella parvulaSp4g00820PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)ch4-1-View
Schrenkiella parvulaSp3g29450PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)ch3-5+View
Schrenkiella parvulaSp7g36580PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1)ch7-6+View
Solanum pennelliiSopen10g023060Glycine-rich RNA-binding protein GRP1A - Sinapis alba (White mustard) (Brassica hirta), Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). | GLYCINE RICH PROTEIN 7 (ATGRP7) | FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding | INVOLVED IN: in 12 processes | LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1Spenn-ch10+View
Solanum pennelliiSopen01g051850Glycine-rich RNA-binding protein GRP1A - Sinapis alba (White mustard) (Brassica hirta), Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). | GLYCINE RICH PROTEIN 7 (ATGRP7) | FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding | INVOLVED IN: in 12 processes | LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1Spenn-ch01+View
Solanum tuberosumPGSC0003DMG400000708Glycine-rich RNA binding proteinST4.03ch01+View
Solanum tuberosumPGSC0003DMG400033902RNA-binding gricine-rich protein-1cST4.03ch10+View
Selenicereus undatusHund00262Scaffold_33678-View
Selenicereus undatusHund06236Scaffold_33676+View
Trochodendron aralioidesTAR381G0905group11+View
Trochodendron aralioidesTAR628G0585group5+View
Theobroma cacaoThecc.02G084800Glycine-rich RNA-binding protein 7Chromosome_2-View
Tarenaya hasslerianaTHA.LOC104819608glycine-rich RNA-binding protein GRP2A-likeNW_010966177.1+View
Tarenaya hasslerianaTHA.LOC104824824glycine-rich RNA-binding protein GRP1A-likeNW_010966933.1-View
Tarenaya hasslerianaTHA.LOC104807734glycine-rich RNA-binding protein GRP1A-likeNW_010963495.1+View
Tarenaya hasslerianaTHA.LOC104807840glycine-rich RNA-binding protein GRP1A-likeNW_010963495.1-View
Tripterygium wilfordiiTWI31G0254NC_052233.1-View
Tripterygium wilfordiiTWI75G1009NC_052253.1-View
Vaccinium macrocarponvmacro17489Similar to Glycine-rich RNA-binding protein (Daucus carota OX%3D4039)chr3_Vaccinium_macrocarpon_Stevens_v1+View
Vaccinium macrocarponvmacro02100Similar to blt801: Glycine-rich RNA-binding protein blt801 (Hordeum vulgare OX%3D4513)chr1_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo1127G0622CM024076.1-View
Vitis viniferaGSVIVG01031973001chr3+View