Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold118G32570scaffold118-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG9G12040LG-9+View
Arabidopsis lyrataAL2G31220scaffold_2-View
Avicennia marinaMSTRG.1573ScioBoG_102833_HRSCAF_103052-View
Arabidopsis thalianaAT1G71692AGAMOUS-like 12 Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14%2C and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots. AGAMOUS-like 12 (AGL12)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%2C root development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C D bilateral stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G58780.1)%3B Has 6551 Blast hits to 6549 proteins in 840 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 621%3B Fungi - 300%3B Plants - 5564%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink).Chr1-View
Amborella trichopodaATR1136G181AmTr_v1.0_scaffold00071-View
Brassica carinataBcaC01g04696ChrC01+View
Brassica napusC03p34820C03-View
Brassica napusA03p28800A03-View
Brassica rapaBraA03t12079ZA03-View
Camellia sinensis var. sinensisCSS0002234PREDICTED: agamous-like MADS-box protein AGL12 [Vitis vinifera]Chr13+View
Coffea canephoraCc10_g09390Agamous-like MADS-box protein AGL11chr10+View
Citrus clementinaCiclev10023717m.gscaffold_3-View
Cardamine hirsutaCARHR260930Agamous MADS-box transcription factorChr8-View
Cucumis meloMELO3C033521.2AGAMOUS MADS box factor transcription factorchr09-View
Capsella rubellaCarub.0002s1842PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12scaffold_2-View
Cucumis sativus L.CsaV3_5G040310MADS-box transcription factorchr5+View
Durio zibethinusDuzib177G0984NW_019168004.1-View
Erythranthe guttataMigut.C01334scaffold_3-View
Eutrema salsugineumThhalv10028938m.gPTHR11945:SF170 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL11scaffold_3+View
Fragaria x ananassaFAN04G0095PTHR11945//PTHR11945:SF238 - MADS BOX PROTEIN // SUBFAMILY NOT NAMEDFvb5-4-View
Fragaria x ananassaFAN18G1043PTHR11945//PTHR11945:SF238 - MADS BOX PROTEIN // SUBFAMILY NOT NAMEDFvb5-1-View
Fragaria x ananassaFAN08G0956PTHR11945:SF170 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL11Fvb5-3+View
Fragaria vescaFvH4_5g32540PTHR11945//PTHR11945:SF238 - MADS BOX PROTEIN // SUBFAMILY NOT NAMEDFvb5-View
Gossypium hirsutumGohir.A13G117800PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12A13+View
Gossypium raimondiiGorai.009G265100Chr09-View
Magnolia biondiiMBI03_g14521_MAGBIOAED:0.06Chr03-View
Malus domesticaMD15G1400400AGAMOUS-like 12Chr15-View
Malus domesticaMD08G1216000AGAMOUS-like 12Chr08-View
Olea europaeaOeu006602.1scaffold124-View
Petunia axillarisPeaxi162Scf00688g00218MADS-box transcription factor 26Peaxi162Scf00688+View
Punica granatumPGR042G0192NC_045130.1-View
Prunus persicaPrupe.1G548000PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12Pp01-View
Papaver somniferumPSO170G6311NC_039360.1+View
Populus trichocarpaPotri.019G076800PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12Chr19-View
Quercus lobataQL09p0044209-View
Salvia bowleyanaSalBow6G2599GWHASIU00000002+View
Salix brachistaSabra19G0088100GWHAAZH00000019-View
Salix brachistaSabra13G0088700GWHAAZH00000013-View
Solanum lycopersicumSolyc06g064840.4AGAMOUS-like MADS-box transcription factor (AHRD V3.3 *** K7WPA8_NARBU)SL4.0ch06+View
Solanum pennelliiSopen06g023350a MADS box transcription factor expressed in the carpel and ovules | SEEDSTICK (STK) | FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development | LOCATED IN: nucleus | EXPRESSED IN: 11 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box , Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein ., Floral homeotic protein AGAMOUS (GAG2) - Panax ginseng (Korean ginseng)Spenn-ch06+View
Solanum tuberosumPGSC0003DMG400005176Fbp11 proteinST4.03ch06-View
Solanum tuberosumPGSC0003DMG400025525TAGL11 transcription factorST4.03ch11+View
Selenicereus undatusHund26634Scaffold_2055-View
Theobroma cacaoThecc.08G194400K-box region and MADS-box transcription factor family proteinChromosome_8-View
Tarenaya hasslerianaTHA.LOC104815939agamous-like MADS-box protein AGL11 isoform X1NW_010960187.1+View
Vitis viniferaGSVIVG01025945001chr18-View