Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold146G36114scaffold146+View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG5G6450LG-5+View
Acer truncatumAtru.chr1.2579chr1+View
Actinidia chinensisActinidia34482Lachesis_group15+View
Actinidia chinensisActinidia23854Lachesis_group9-View
Arabidopsis lyrataAL1G17000scaffold_1+View
Arabidopsis lyrataAL4G25110scaffold_4-View
Avicennia marinaMSTRG.12693ScioBoG_17730_HRSCAF_17811-View
Amaranthus hybridusAh.08g215380U2 small nuclear ribonucleoprotein B'' (U2 snRNP B'')AmaHy_arrow1_Scaffold_8-View
Aquilegia oxysepalaAqoxy4G02180CHR04+View
Arabidopsis thalianaAT1G06960RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1)%3B Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 815%3B Fungi - 369%3B Plants - 285%3B Viruses - 1%3B Other Eukaryotes - 192 (source: NCBI BLink).Chr1+View
Arabidopsis thalianaAT2G30260U2 small nuclear ribonucleoprotein B encodes U2B%2C which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. U2 small nuclear ribonucleoprotein B (U2B'')%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: cis assembly of pre-catalytic spliceosome%3B LOCATED IN: nucleoplasm%2C Cajal body%2C cytoplasm%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G06960.1)%3B Has 1885 Blast hits to 1858 proteins in 260 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 926%3B Fungi - 414%3B Plants - 327%3B Viruses - 1%3B Other Eukaryotes - 215 (source: NCBI BLink).Chr2-View
Brassica carinataBcaC02g11111ChrC02-View
Brassica carinataBcaB02g10311ChrB02-View
Brassica napusA05p15200A05+View
Brassica napusC04p20250C04+View
Brassica oleraceaBolC4t23563HC4+View
Brassica rapaBraA05t20438ZA05+View
Beta vulgarisEL10Ac7g15874K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Chr7_EL10_PGA_scaffold5+View
Camellia sinensis var. sinensisCSS0038635spliceosomal protein [Solanum tuberosum]Chr4+View
Cannabis sativaCANSAT54G2102NC_044375.1-View
Cicer arietinum L.Ca_05678_v3Ca_LG2_v3-View
Corylus avellanaHaze_24425Similar to U2B'': U2 small nuclear ribonucleoprotein B'' (Arabidopsis thaliana OX%3D3702)6-View
Coffea canephoraCc01_g14970U2 small nuclear ribonucleoprotein B''chr1-View
Carpinus fangianaCfa011789Cfa04-View
Cardamine hirsutaCARHR006630U2 small nuclear ribonucleoprotein BChr1+View
Cardamine hirsutaCARHR123580U2 small nuclear ribonucleoprotein BChr4-View
Carya illinoinensisCiPaw.13G068000K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Chr13+View
Citrullus lanatusClCG03G000140U1 small nuclear ribonucleoprotein ACG_Chr03-View
Cucumis meloMELO3C020490.2U2 small nuclear ribonucleoprotein B'' 2-likechr12-View
Corchorus olitoriusCOL.COLO4_11167hypothetical proteinAWUE01014647.1-View
Carica papayaCpa.g.sc2.341supercontig_2+View
Chenopodium quinoaAUR62036233U2B'': U2 small nuclear ribonucleoprotein B''C_Quinoa_Scaffold_2528+View
Chenopodium quinoaAUR62009712U2B'': U2 small nuclear ribonucleoprotein B''C_Quinoa_Scaffold_2493-View
Capsella rubellaCarub.0001s0625K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)scaffold_1+View
Capsella rubellaCarub.0004s1142K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)scaffold_4-View
Davidia involucrataDinv28703GWHABJS00000010-View
Davidia involucrataDinv09682GWHABJS00000007-View
Durio zibethinusDuzib168G0560NW_019168159.1-View
Erigeron canadensisECA247G1877Conyza_canadensis_scaffold:7-View
Eucalyptus grandisEucgr.B04011Chr02-View
Erythranthe guttataMigut.N00753scaffold_14+View
Eutrema salsugineumThhalv10017204m.gK11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)scaffold_10+View
Eutrema salsugineumThhalv10009693m.gPTHR10501:SF13 - U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ascaffold_5-View
Fragaria x ananassaFAN16G2062K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Fvb3-3-View
Fragaria x ananassaFAN25G2748PF00076//PF13456 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Reverse transcriptase-like (RVT_3)Fvb3-1+View
Fragaria x ananassaFAN11G0853K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Fvb3-4+View
Fragaria x ananassaFAN21G1180K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Fvb3-2-View
Fragaria vescaFvH4_3g39900K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Fvb3-View
Gossypium hirsutumGohir.A03G024900K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)A03+View
Gossypium hirsutumGohir.D03G143600K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)D03-View
Glycine maxGlyma.02G232800K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Gm02-View
Glycine maxGlyma.14G200400K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Gm14-View
Gossypium raimondiiGorai.003G150900Chr03-View
Lupinus albusLalb_Chr10g0103651K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Lalb_Chr10-View
Lupinus albusLalb_Chr04g0251891K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Lalb_Chr04+View
Lotus japonicusLjContig00141g0023873K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Contig00141+View
Lonicera japonicaLj2A1095G43GWHAAZE00000002-View
Lactuca sativaLsat_1_v5_gn_9_14560K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Lsat_1_v8_lg_9+View
Malus domesticaMD03G1057700U2 small nuclear ribonucleoprotein BChr03+View
Medicago truncatulaMedtr5g074430U1 small nuclear ribonucleoproteinchr5-View
Petunia axillarisPeaxi162Scf00390g00531U2 small nuclear ribonucleoprotein BPeaxi162Scf00390+View
Punica granatumPGR102G3118NC_045129.1-View
Populus trichocarpaPotri.013G153700K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Chr13-View
Phaseolus vulgarisPhvul.008G251100K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)Chr08+View
Quercus lobataQL01p0258601+View
Rosa chinensisRcHm_v2.0_Chr5g0071861RcHm_v2.0_Chr5-View
Rhododendron simsiiRhsim13G0063100chr13+View
Rhododendron simsiiRhsim01G0241200chr01-View
Salvia bowleyanaSalBow2G0104GWHASIU00000007-View
Simmondsia chinensisSc21g0004970GWHAASQ00000021+View
Sechium eduleSed0023347LG01-View
Schrenkiella parvulaSp4g12840K11094 - U2 small nuclear ribonucleoprotein B'' (SNRPB2)ch4-6-View
Solanum pennelliiSopen06g033750encodes U2B, which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. | U2 small nuclear ribonucleoprotein B (U2B) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: cis assembly of pre-catalytic spliceosome | LOCATED IN: nucleoplasm, Cajal body, cytoplasm | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family proteinSpenn-ch06-View
Solanum tuberosumPGSC0003DMG400030459Spliceosomal proteinST4.03ch06-View
Trochodendron aralioidesTAR369G0832group18-View
Trochodendron aralioidesTAR623G1653group7+View
Theobroma cacaoThecc.09G359100U2 small nuclear ribonucleoprotein BChromosome_9-View
Tripterygium wilfordiiTWI31G1104NC_052233.1+View
Tripterygium wilfordiiTWI79G0111NC_052238.1+View
Vaccinium macrocarponvmacro14624Similar to U2B'': U2 small nuclear ribonucleoprotein B'' (Arabidopsis thaliana OX%3D3702)chr7_Vaccinium_macrocarpon_Stevens_v1-View
Vaccinium macrocarponvmacro02910Similar to U2B'': U2 small nuclear ribonucleoprotein B'' (Arabidopsis thaliana OX%3D3702)chr9_Vaccinium_macrocarpon_Stevens_v1+View
Vitis viniferaGSVIVG01024622001chr6-View