Anchorpoints
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| Nitab4.5_0002503g0110 | CHD, C-terminal 2, SNF2-related, P-loop containing nucleoside triphosphate hydrolase, Zinc finger, PHD-finger, Helicase, superfamily 1/2, ATP-binding domain, Domain of unknown function DUF1086, Zinc finger, RING/FYVE/PHD-type, Chromo domain/shadow, Chromo domain-like, Zinc finger, PHD-type, Homeodomain-like, Zinc finger, FYVE/PHD-type, Chromo domain, Rubredoxin-like domain, Domain of unknown function DUF1087, Zinc finger, PHD-type, conserved site | Nitab4.5_0002503 | - | View |
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Beta vulgaris | EL10Ac2g04134 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | Chr2_EL10_PGA_scaffold6 | + | View |
| Capsicum annuum | CAN.G199.65 | PGAv.1.6.scaffold199 | + | View | |
| Coffea canephora | Cc08_g00060 | CHD3-type chromatin-remodeling factor PICKLE | chr8 | + | View |
| Petunia axillaris | Peaxi162Scf00430g00415 | Chromodomain-helicase-DNA-binding protein 4 | Peaxi162Scf00430 | - | View |
| Solanum lycopersicum | Solyc06g065730.3 | CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3 *** A0A2G2ZAQ4_CAPAN) | SL4.0ch06 | + | View |
| Solanum pennellii | Sopen06g024260 | Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. | PICKLE (PKL) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 , Zinc finger, RING-type , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Protein of unknown function DUF1086 , Chromo domain , SNF2-related , DEAD-like helicase, N-terminal , Chromo domain-like , DNA/RNA helicase, C-terminal , Zinc finger, FYVE/PHD-type , Helicase, superfamily 1/2, ATP-binding domain , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative | Spenn-ch06 | + | View |
| Solanum tuberosum | PGSC0003DMG400026094 | Conserved gene of unknown function | ST4.03ch06 | - | View |
| Vitis vinifera | GSVIVG01035901001 | chr4 | + | View |