Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0034059PREDICTED: splicing factor U2af small subunit B-like [Beta vulgaris subsp. vulgaris]Chr10-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatumAtru.chr8.1642chr8-View
Actinidia chinensisActinidia39880Lachesis_group17+View
Actinidia chinensisActinidia11330Lachesis_group21+View
Avicennia marinaMSTRG.5805ScioBoG_102839_HRSCAF_103093+View
Amaranthus hybridusAh.08g210990AmaHy_arrow1_Scaffold_8-View
Aquilegia oxysepalaAqoxy1G00953CHR01-View
Aquilegia oxysepalaAqoxy2G01428CHR02-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.PQW11PK12836 - splicing factor U2AF 35 kDa subunit (U2AF1)arahy.Tifrunner.gnm1.Arahy.13-View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.07Q55LK12836 - splicing factor U2AF 35 kDa subunit (U2AF1)arahy.Tifrunner.gnm1.Arahy.03-View
Amborella trichopodaATR0820G024AmTr_v1.0_scaffold00040-View
Beta vulgarisEL10Ac7g16999K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Chr7_EL10_PGA_scaffold5-View
Capsicum annuumCAN.G644.36PGAv.1.6.scaffold644-View
Cannabis sativaCANSAT80G1629NC_044372.1+View
Cicer arietinum L.Ca_01683_v3Ca_LG1_v3-View
Cicer arietinum L.Ca_08964_v3Ca_LG3_v3+View
Corylus avellanaHaze_23457Similar to U2AF35A: Splicing factor U2af small subunit A (Oryza sativa subsp. japonica OX%3D39947)6-View
Corylus avellanaHaze_19530Similar to U2AF35B: Splicing factor U2af small subunit B (Arabidopsis thaliana OX%3D3702)10+View
Coffea canephoraCc06_g05160Splicing factor U2af small subunit Achr6+View
Coffea canephoraCc01_g09880Splicing factor U2af small subunit Achr1-View
Citrus clementinaCiclev10029043m.gscaffold_8-View
Citrus clementinaCiclev10012216m.gscaffold_6-View
Ceratophyllum demersumCDE02G47461-View
Ceratophyllum demersumCDE08G05466+View
Carya illinoinensisCiPaw.09G008100K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Chr09+View
Carya illinoinensisCiPaw.13G141300PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMEDChr13-View
Carya illinoinensisCiPaw.10G004900K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Chr10+View
Citrullus lanatusClCG04G009760Splicing factor U2af 38 kDa subunitCG_Chr04+View
Cucumis meloMELO3C024515.2splicing factor U2af small subunit B-likechr08-View
Chenopodium quinoaAUR62033586U2AF35B: Splicing factor U2af small subunit BC_Quinoa_Scaffold_1776-View
Chenopodium quinoaAUR62023944U2AF35A: Splicing factor U2af small subunit AC_Quinoa_Scaffold_3389-View
Capsella rubellaCarub.0005s1050scaffold_5-View
Cucumis sativus L.CsaV3_6G040400splicing factor U2af small subunit B-likechr6+View
Daucus carotaDCAR_020780hypothetical proteinDCARv2_Chr6+View
Davidia involucrataDinv29420GWHABJS00000007-View
Davidia involucrataDinv19822GWHABJS00000015+View
Davidia involucrataDinv21264GWHABJS00000021-View
Durio zibethinusDuzib170G0329The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codonsNW_019167871.1-View
Erigeron canadensisECA238G3788Conyza_canadensis_scaffold:6-View
Erigeron canadensisECA248G2699Conyza_canadensis_scaffold:9+View
Eucalyptus grandisEucgr.B03897Chr02-View
Eucalyptus grandisEucgr.K02078Chr11-View
Erythranthe guttataMigut.L01751scaffold_12+View
Erythranthe guttataMigut.N02517scaffold_14-View
Fragaria x ananassaFAN14G3478PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMEDFvb6-1+View
Fragaria x ananassaFAN09G2644K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Fvb6-2-View
Fragaria x ananassaFAN02G4341K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Fvb6-4-View
Fragaria x ananassaFAN05G3396K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Fvb6-3-View
Fragaria x ananassaFAN11G2227K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Fvb3-4+View
Fragaria vescaFvH4_6g17780K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Fvb6+View
Glycine maxGlyma.03G190600K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Gm03+View
Glycine maxGlyma.19G191100K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Gm19+View
Hydrangea macrophyllaHma1.2p1_0651F.1_g195810Hma1.2p1_0651F.1+View
Lupinus albusLalb_Chr22g0350601K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Lalb_Chr22+View
Lupinus albusLalb_Chr02g0155111K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Lalb_Chr02+View
Lupinus albusLalb_Chr20g0112211K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Lalb_Chr20-View
Lotus japonicusLj1g0014738K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)chr1-View
Lotus japonicusLj3g0023331PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMEDchr3+View
Lonicera japonicaLj3A1004G90GWHAAZE00000003-View
Lactuca sativaLsat_1_v5_gn_1_50340Lsat_1_v8_lg_1+View
Lactuca sativaLsat_1_v5_gn_2_21421Lsat_1_v8_lg_2+View
Magnolia biondiiMBI01_g39278_MAGBIOAED:0.12Chr01-View
Magnolia biondiiMBI17_g30588_MAGBIOAED:0.27Chr17-View
Malus domesticaMD14G1014800Zinc finger C-x8-C-x5-C-x3-H type family proteinChr14+View
Malus domesticaMD11G1156400Zinc finger C-x8-C-x5-C-x3-H type family proteinChr11+View
Malus domesticaMD12G1016800Zinc finger C-x8-C-x5-C-x3-H type family proteinChr12+View
Malus domesticaMD03G1134000U2 snRNP auxiliary factor small subunitChr03+View
Manihot esculentaManes.08G020350Chromosome08+View
Manihot esculentaManes.09G060572Chromosome09-View
Manihot esculentaManes.11G156300Chromosome11+View
Medicago truncatulaMedtr7g103630splicing factor U2af small subunit A-like proteinchr7+View
Nelumbo nuciferaNn6g35063chr6-View
Nicotiana tabacumNitab4.5_0000132g0230Zinc finger, CCCH-type, Nucleotide-binding, alpha-beta plait, U2 auxiliary factor small subunitNitab4.5_0000132-View
Petunia axillarisPeaxi162Scf00110g01922Splicing factor U2AF 35 kDa subunitPeaxi162Scf00110+View
Prunus persicaPrupe.7G118600K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Pp07-View
Pisum sativumPsat3g036760U2 auxiliary factor small subunit signaturechr3LG5-View
Papaver somniferumPSO339G6198NC_039366.1+View
Papaver somniferumPSO384G1979NC_039368.1-View
Papaver somniferumPSO063G4017NC_039364.1+View
Populus trichocarpaPotri.004G188900K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Chr04-View
Populus trichocarpaPotri.006G116700K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Chr06-View
Populus trichocarpaPotri.009G149600PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMEDChr09-View
Phaseolus vulgarisPhvul.005G127700K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Chr05-View
Phaseolus vulgarisPhvul.001G186200K12836 - splicing factor U2AF 35 kDa subunit (U2AF1)Chr01+View
Quercus lobataQL07p0406667-View
Rosa chinensisRcHm_v2.0_Chr3g0472021RcHm_v2.0_Chr3+View
Rhododendron simsiiRhsim04G0136300chr04-View
Rhododendron simsiiRhsim03G0081800chr03-View
Striga asiaticaSGA_v2.0_scaffold40G15412scaffold40-View
Salix brachistaSabra04G0129200GWHAAZH00000004+View
Salix brachistaSabra06G0091000GWHAAZH00000006-View
Simmondsia chinensisSc02g0001160GWHAASQ00000002-View
Sechium eduleSed0021626LG10+View
Sechium eduleSed0008858LG14-View
Solanum lycopersicumSolyc11g066830.2Zinc finger transcription factor 68SL4.0ch11+View
Solanum pennelliiSopen10g033110U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. | U2AF35B | FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: photoperiodism, flowering | LOCATED IN: nucleus | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , U2 auxiliary factor small subunit | BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit, putativeSpenn-ch10-View
Solanum tuberosumPGSC0003DMG400026524Splicing factor U2af small subunit AST4.03ch11+View
Solanum tuberosumPGSC0003DMG400028265U2 snrnp auxiliary factor, small subunitST4.03ch10+View
Trochodendron aralioidesTAR633G0835group2-View
Trochodendron aralioidesTAR623G1115group7-View
Trochodendron aralioidesTAR636G0528group1+View
Theobroma cacaoThecc.09G292400Zinc finger C-x8-C-x5-C-x3-H type family proteinChromosome_9-View
Tripterygium wilfordiiTWI75G0350NC_052253.1+View
Tripterygium wilfordiiTWI77G0099NC_052236.1-View
Tripterygium wilfordiiTWI74G1116NC_052234.1+View
Vaccinium macrocarponvmacro07368Similar to U2AF35B: Splicing factor U2af small subunit B (Arabidopsis thaliana OX%3D3702)scaffold00230_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo1383G0204CM024070.1+View
Vigna mungoVMungo1080G0212CM024079.1+View
Vitis viniferaGSVIVG01033771001chr8-View