Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0016881PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Vitis vinifera]Chr10+View
CSS0034438PREDICTED: 40S ribosomal protein S17-like isoform X1 [Solanum tuberosum]Contig40-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatumAtru.chr12.1054_Atru.chr12.1055chr12+View
Actinidia chinensisActinidia05418Lachesis_group5+View
Actinidia chinensisActinidia34714Lachesis_group6+View
Actinidia chinensisActinidia06170Lachesis_group20+View
Avicennia marinaMSTRG.19377ScioBoG_25048_HRSCAF_25167-View
Aquilegia oxysepalaAqoxy1G00644CHR01-View
Amborella trichopodaATR0820G002AmTr_v1.0_scaffold00040-View
Brassica carinataBcaB02g08494ChrB02+View
Brassica napusC09p72090C09-View
Capsicum annuumCAN.G143.11PGAv.1.6.scaffold143+View
Cicer arietinum L.Ca_02213_v3Ca_LG1_v3+View
Corylus avellanaHaze_03480Similar to PCMP-H35: Putative pentatricopeptide repeat-containing protein At5g09950 (Arabidopsis thaliana OX%3D3702)1-View
Coffea canephoraCc02_g0952040S ribosomal protein S17chr2+View
Carpinus fangianaCfa010540Cfa04-View
Carya illinoinensisCiPaw.10G011000PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)Chr10+View
Carya illinoinensisCiPaw.14G034200PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)Chr14+View
Citrullus lanatusClCG08G008360Pentatricopeptide repeat protein 79CG_Chr08+View
Citrullus lanatusClCG10G01859040S ribosomal protein S17, putativeCG_Chr10-View
Cucumis meloMELO3C009509.240S ribosomal protein S17-likechr04-View
Cucumis meloMELO3C024569.2Pentatricopeptide repeat-containing family proteinchr08-View
Cucumis meloMELO3C019907.240S ribosomal protein S17chr03-View
Carica papayaCpa.g.sc5.4supercontig_5-View
Carica papayaCpa.g.sc33.158supercontig_33-View
Chenopodium quinoaAUR62034184RPS17D: 40S ribosomal protein S17-4C_Quinoa_Scaffold_2123-View
Chenopodium quinoaAUR62034114PCMP-H49: Pentatricopeptide repeat-containing protein At5g46460, mitochondrialC_Quinoa_Scaffold_2123+View
Cucumis sativus L.CsaV3_6G004340pentatricopeptide repeat-containing protein At5g04780chr6+View
Cucumis sativus L.CsaV3_3G037430Pentatricopeptide repeat-containing proteinchr3+View
Daucus carotaDCAR_020728hypothetical proteinDCARv2_Chr6-View
Davidia involucrataDinv07590GWHABJS00000009+View
Davidia involucrataDinv21193GWHABJS00000021-View
Davidia involucrataDinv31464GWHABJS00000004-View
Durio zibethinusDuzib093G2072NW_019167937.1-View
Erigeron canadensisECA238G0791Conyza_canadensis_scaffold:6-View
Erigeron canadensisECA234G2770Conyza_canadensis_scaffold:4-View
Erigeron canadensisECA240G2557Conyza_canadensis_scaffold:5-View
Eucalyptus grandisEucgr.G02685Chr07-View
Gossypium hirsutumGohir.D01G193600PF01535//PF12854//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3)D01-View
Gossypium hirsutumGohir.D10G204950PF00076//PF01535//PF13041//PF14432 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)D10-View
Gossypium hirsutumGohir.A01G204100PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2)A01-View
Gossypium raimondiiGorai.011G229900Chr11-View
Helianthus annuusHanXRQChr11g0341951Probable ribosomal S17 family proteinHanXRQChr11-View
Lupinus albusLalb_Chr25g0288131K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17)Lalb_Chr25-View
Lonicera japonicaLj3P925T51GWHAAZE00000003-View
Lactuca sativaLsat_1_v5_gn_2_105620K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17)Lsat_1_v8_lg_2+View
Lactuca sativaLsat_1_v5_gn_8_24360PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)Lsat_1_v8_lg_8+View
Lactuca sativaLsat_1_v5_gn_2_101380PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2)Lsat_1_v8_lg_2+View
Malus domesticaMD14G1026500Tetratricopeptide repeat (TPR)-like superfamily proteinChr14+View
Malus domesticaMD12G1028100Tetratricopeptide repeat (TPR)-like superfamily proteinChr12+View
Manihot esculentaManes.08G026500Chromosome08+View
Medicago truncatulaMedtr1g111670pentatricopeptide (PPR) repeat proteinchr1-View
Medicago truncatulaMedtr1g059720organelle transcript processing protein, putativechr1-View
Olea europaeaOeu033281.1scaffold279+View
Oryza sativa ssp. japonicaOs05g0439300Pentatricopeptide repeat domain containing protein.chr05-View
Petunia axillarisPeaxi162Scf00519g0005440S ribosomal protein S17Peaxi162Scf00519-View
Punica granatumPGR044G1880NC_045134.1-View
Punica granatumPGR142G0603NC_045128.1-View
Prunus persicaPrupe.2G071000PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase)Pp02-View
Papaver somniferumPSO384G0976NC_039368.1+View
Papaver somniferumPSO339G4131NC_039366.1-View
Populus trichocarpaPotri.008G017300K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17)Chr08+View
Populus trichocarpaPotri.010G241100PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)Chr10+View
Quercus lobataQL04p0469454+View
Rhododendron simsiiRhsim13G0113500chr13+View
Rhododendron simsiiRhsim03G0097000chr03-View
Rhododendron simsiiRhsim03G0072600chr03+View
Salvia bowleyanaSalBow6G0550GWHASIU00000002-View
Salix brachistaSabra03G0003500GWHAAZH00000003-View
Salix brachistaSabra08G0010800GWHAAZH00000008+View
Salix brachistaSabra10G0188700GWHAAZH00000010+View
Simmondsia chinensisSc09g0005190GWHAASQ00000009-View
Sechium eduleSed0002853LG03-View
Sequoiadendron giganteumSEGI_32457chr6+View
Solanum lycopersicumSolyc11g006690.140S ribosomal protein S17 (AHRD V3.3 *** A0A2G2VEQ4_CAPBA)SL4.0ch11-View
Solanum pennelliiSopen11g002620Ribosomal S17 family protein | FUNCTIONS IN: structural constituent of ribosome | INVOLVED IN: translation | LOCATED IN: ribosome, intracellular | EXPRESSED IN: male gametophyte, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage | CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e , Ribosomal protein S17e, conserved site | BEST Arabidopsis thaliana protein match is: Ribosomal S17 family proteinSpenn-ch11-View
Solanum pennelliiSopen05g033670Ribosomal S17 family protein | FUNCTIONS IN: structural constituent of ribosome | INVOLVED IN: translation | LOCATED IN: ribosome, intracellular | EXPRESSED IN: male gametophyte, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage | CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e , Ribosomal protein S17e, conserved site | BEST Arabidopsis thaliana protein match is: Ribosomal S17 family proteinSpenn-ch05-View
Solanum tuberosumPGSC0003DMG40002824340S ribosomal protein S17ST4.03ch10+View
Solanum tuberosumPGSC0003DMG40002339440S ribosomal protein S17ST4.03ch05-View
Solanum tuberosumPGSC0003DMG400007598Pentatricopeptide repeat-containing proteinST4.03ch11+View
Selenicereus undatusHund06793Scaffold_33676+View
Trochodendron aralioidesTAR633G0434group2-View
Trochodendron aralioidesTAR636G2966group1+View
Theobroma cacaoThecc.10G115300Pentatricopeptide repeat (PPR) superfamily proteinChromosome_10+View
Theobroma cacaoThecc.05G283500Mitochondrial editing factor 20Chromosome_5+View
Theobroma cacaoThecc.10G102100Pentatricopeptide repeat-containing proteinChromosome_10+View
Tripterygium wilfordiiTWI53G0411NC_052244.1-View
Tripterygium wilfordiiTWI38G0516NC_052252.1-View
Tripterygium wilfordiiTWI73G0656NC_052232.1+View
Vaccinium macrocarponvmacro07265Similar to PCMP-H32: Putative pentatricopeptide repeat-containing protein At3g23330 (Arabidopsis thaliana OX%3D3702)chr2_Vaccinium_macrocarpon_Stevens_v1-View
Vaccinium macrocarponvmacro10286Similar to PCMP-H13: Pentatricopeptide repeat-containing protein At4g14050, mitochondrial (Arabidopsis thaliana OX%3D3702)chr8_Vaccinium_macrocarpon_Stevens_v1-View
Vaccinium macrocarponvmacro10319Similar to PCMP-H38: Pentatricopeptide repeat-containing protein At5g48910 (Arabidopsis thaliana OX%3D3702)chr8_Vaccinium_macrocarpon_Stevens_v1+View
Vigna mungoVMungo0720G0108CM024071.1-View
Vitis viniferaGSVIVG01034655001chr13+View