Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0003049hypothetical protein CICLE_v10003964mg [Citrus clementina]Chr4-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG1G16890LG-1-View
Aethionema arabicumAa31LG3G17000LG-3+View
Arabidopsis lyrataAL6G20600scaffold_6-View
Arabidopsis lyrataAL8G42560scaffold_8+View
Arabidopsis thalianaAT5G10140K-box region and MADS-box transcription factor family protein MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization%2C FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization%2C but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression%2C whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3? to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. FLOWERING LOCUS C (FLC)%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G77080.4)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink).Chr5-View
Amborella trichopodaATR0564G144AmTr_v1.0_scaffold00010+View
Brassica napusC02p04280C02-View
Brassica napusA02p00340A02-View
Brassica napusC09p67320C09+View
Brassica napusA02p43650A02+View
Brassica oleraceaBolC2t12438HC2+View
Brassica rapaBraA10t44790ZA10+View
Corylus avellanaHaze_24992Similar to AGL104: Agamous-like MADS-box protein AGL104 (Arabidopsis thaliana OX%3D3702)8-View
Cardamine hirsutaCARHR203150MADS-box flowering locus CChr6+View
Cardamine hirsutaCARHR278970MADS-box flowering locus CChr8+View
Chenopodium quinoaAUR62003761AGL104: Agamous-like MADS-box protein AGL104C_Quinoa_Scaffold_2370+View
Capsella rubellaCarub.0008s2589scaffold_8+View
Capsella rubellaCarub.0006s0860PTHR11945:SF221 - SERUM RESPONSE FACTORscaffold_6-View
Erythranthe guttataMigut.H02389scaffold_8+View
Erythranthe guttataMigut.L00101scaffold_12-View
Eutrema salsugineumThhalv10014726m.gscaffold_2-View
Eutrema salsugineumThhalv10004949m.gPTHR11945:SF221 - SERUM RESPONSE FACTORscaffold_6-View
Gossypium raimondiiGorai.007G242000Chr07-View
Magnolia biondiiMBI02_g38912_MAGBIOAED:0.52Chr02+View
Manihot esculentaManes.13G089060Chromosome13-View
Olea europaeaOeu028405.1chr18+View
Olea europaeaOeu012464.1chr18-View
Papaver somniferumPSO447G0194NW_020621936.1+View
Salvia bowleyanaSalBow5G3090GWHASIU00000003+View
Salvia bowleyanaSalBow5G2860GWHASIU00000003-View
Sapria himalayanaSHI11612scaffold12_13443846-View
Solanum lycopersicumSolyc04g054525.1Transcription factor, MADS-box (AHRD V3.3 *-* A0A2U1Q810_ARTAN)SL4.0ch04-View
Schrenkiella parvulaSp2g28130PTHR11945:SF221 - SERUM RESPONSE FACTORch2-4+View
Solanum tuberosumPGSC0003DMG400036414MADS-box transcription factorST4.03ch04+View
Theobroma cacaoThecc.01G107100AGAMOUS-like 66Chromosome_1+View
Tarenaya hasslerianaTHA.LOC104799088agamous-like MADS-box protein AGL27 isoform X1NW_010960188.1+View
Tripterygium wilfordiiTWI74G1564NC_052234.1+View
Vaccinium macrocarponvmacro18618Similar to AGL66: Agamous-like MADS-box protein AGL66 (Arabidopsis thaliana OX%3D3702)chr3_Vaccinium_macrocarpon_Stevens_v1+View