Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0027380PREDICTED: serine/arginine-rich splicing factor RS2Z32 isoform X1 [Vitis vinifera]Chr4-View


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG5G22680LG-5-View
Aethionema arabicumAa31LG10G9630LG-10+View
Aethionema arabicumAa31LG1G22180LG-1-View
Acer truncatumAtru.chr12.597chr12+View
Actinidia chinensisActinidia19735Lachesis_group17-View
Actinidia chinensisActinidia03007Lachesis_group22+View
Arabidopsis lyrataAL5G34420scaffold_5-View
Arabidopsis lyrataAL4G33720scaffold_4-View
Avicennia marinaMSTRG.5705ScioBoG_102839_HRSCAF_103093+View
Avicennia marinaMSTRG.19116ScioBoG_25048_HRSCAF_25167+View
Aquilegia oxysepalaAqoxy4G03099CHR04+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.U08GD1K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)arahy.Tifrunner.gnm1.Arahy.16+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.6ZDT16K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)arahy.Tifrunner.gnm1.Arahy.06+View
Arabidopsis thalianaAT2G37340arginine/serine-rich zinc knuckle-containing protein 33 encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33)%3B FUNCTIONS IN: zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: spliceosome assembly%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.2)%3B Has 128112 Blast hits to 126672 proteins in 4377 species: Archae - 175%3B Bacteria - 14621%3B Metazoa - 47197%3B Fungi - 12494%3B Plants - 32367%3B Viruses - 521%3B Other Eukaryotes - 20737 (source: NCBI BLink). arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33)%3B FUNCTIONS IN: zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: spliceosome assembly%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Zinc finger%2C CCHC retroviral-type (InterPro:IPR013084)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink).Chr2-View
Brassica napusA03p20610A03-View
Brassica napusC08p28840C08-View
Brassica oleraceaBolC8t50486HC8-View
Cicer arietinum L.Ca_08805_v3Ca_LG3_v3+View
Corylus avellanaHaze_20697Similar to RS2Z32: Serine/arginine-rich splicing factor RS2Z32 (Arabidopsis thaliana OX%3D3702)10-View
Coffea canephoraCc02_g08690Serine/arginine-rich splicing factor RS2Z32chr2+View
Coffea canephoraCc06_g03240Serine/arginine-rich splicing factor RS2Z32chr6+View
Ceratophyllum demersumCDE02G41871-View
Ceratophyllum demersumCDE09G10667+View
Carpinus fangianaCfa001562Cfa01+View
Carpinus fangianaCfa017463Cfa07+View
Cardamine hirsutaCARHR163400Arginine/serine-rich splicing factor, putativeChr5-View
Cardamine hirsutaCARHR132250Arginine/serine-rich splicing factor, putativeChr4+View
Cardamine hirsutaCARHR210700Arginine/serine-rich splicing factor, putativeChr6-View
Carya illinoinensisCiPaw.09G185800PF00076//PF00098//PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)Chr09-View
Carya illinoinensisCiPaw.01G279300KOG0106//KOG0107 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily)Chr01-View
Carya illinoinensisCiPaw.02G178400KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)Chr02-View
Cucumis meloMELO3C011709.2Arginine/serine-rich splicing factor, putativechr10-View
Carica papayaCpa.g.sc114.20supercontig_114+View
Capsella rubellaCarub.0003s0868PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMEDscaffold_3+View
Capsella rubellaCarub.0004s1925KOG0114//KOG4207 - Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamilyscaffold_4-View
Daucus carotaDCAR_017750hypothetical proteinDCARv2_Chr5-View
Davidia involucrataDinv37228GWHABJS00000021-View
Durio zibethinusDuzib128G1379NW_019168481.1+View
Durio zibethinusDuzib114G0437NW_019167926.1+View
Durio zibethinusDuzib106G1529NW_019168492.1+View
Durio zibethinusDuzib093G1184NW_019167937.1-View
Erythranthe guttataMigut.J00390scaffold_10+View
Erythranthe guttataMigut.L01640scaffold_12+View
Eutrema salsugineumThhalv10017989m.gK12896 - splicing factor, arginine/serine-rich 7 (SFRS7)scaffold_10-View
Eutrema salsugineumThhalv10014414m.gPTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMEDscaffold_2+View
Fragaria x ananassaFAN02G0443K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)Fvb6-4+View
Fragaria x ananassaFAN09G4327Fvb6-2-View
Fragaria vescaFvH4_7g20711KOG0105//KOG0107 - Alternative splicing factor ASF/SF2 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily)Fvb7-View
Fragaria vescaFvH4_6g14771K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)Fvb6+View
Gossypium hirsutumGohir.A01G218600PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMEDA01-View
Gossypium hirsutumGohir.D01G207400KOG0107//KOG4207 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Predicted splicing factor, SR protein superfamilyD01-View
Gossypium hirsutumGohir.D10G217100KOG0106//KOG0107 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily)D10-View
Gossypium hirsutumGohir.A10G208800KOG0106//KOG0107 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily)A10-View
Gossypium hirsutumGohir.D13G021300K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)D13+View
Gossypium hirsutumGohir.A13G020800K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)A13+View
Glycine maxGlyma.19G176100PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMEDGm19+View
Glycine maxGlyma.03G175400K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)Gm03+View
Gossypium raimondiiGorai.002G252500Chr02-View
Gossypium raimondiiGorai.011G242700Chr11-View
Gossypium raimondiiGorai.013G024100Chr13+View
Hydrangea macrophyllaHma1.2p1_0111F.1_g053400Hma1.2p1_0111F.1+View
Lupinus albusLalb_Chr20g0113051K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)Lalb_Chr20-View
Lupinus albusLalb_Chr06g0171181K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)Lalb_Chr06+View
Lupinus albusLalb_Chr02g0153381PF00098//PF13893 - Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)Lalb_Chr02+View
Lupinus albusLalb_Chr01g0019111KOG0107 - Alternative splicing factor SRp20/9G8 (RRM superfamily)Lalb_Chr01-View
Lotus japonicusLj1g0023882K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)chr1-View
Lonicera japonicaLj3C975T6GWHAAZE00000003+View
Lonicera japonicaLj8C93T4GWHAAZE00000008+View
Lonicera japonicaLj2C103T9GWHAAZE00000002+View
Malus domesticaMD12G1131700RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domainChr12-View
Nelumbo nuciferaNn2g10557chr2+View
Nicotiana tabacumNitab4.5_0000643g0180RNA recognition motif domain, Nucleotide-binding, alpha-beta plaitNitab4.5_0000643+View
Olea europaeaOeu035163.1chr11-View
Petunia axillarisPeaxi162Scf00015g00272RNA-binding family protein with retrovirus zinc finger-like domain isoform 3Peaxi162Scf00015+View
Punica granatumPGR044G0052NC_045134.1-View
Prunus persicaPrupe.6G246100Pp06-View
Populus trichocarpaPotri.006G215200K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)Chr06+View
Populus trichocarpaPotri.016G081700K12896 - splicing factor, arginine/serine-rich 7 (SFRS7)Chr16+View
Phaseolus vulgarisPhvul.001G172600Chr01+View
Quercus lobataQL07p0459817-View
Rosa chinensisRcHm_v2.0_Chr3g0468001RcHm_v2.0_Chr3+View
Rosa chinensisRcHm_v2.0_Chr1g0364971RcHm_v2.0_Chr1-View
Rhododendron simsiiRhsim03G0125000chr03-View
Rhododendron simsiiRhsim05G0184800chr05-View
Striga asiaticaSGA_v2.0_scaffold126G33861scaffold126+View
Striga asiaticaSGA_v2.0_scaffold94G28645scaffold94+View
Salvia bowleyanaSalBow3G3979GWHASIU00000006-View
Salix brachistaSabra06G0166100GWHAAZH00000006+View
Salix brachistaSabra16G0089500GWHAAZH00000016+View
Solanum lycopersicumSolyc09g005980.4Serine/arginine-rich-splicing factor RS2Z32 (AHRD V3.3 *-* A0A0M9UMT6_NICAT)SL4.0ch09+View
Solanum lycopersicumSolyc05g054920.4Serine/arginine-rich-splicing factor RS2Z32 (AHRD V3.3 *-* A0A0M8KRK6_NICAT)SL4.0ch05+View
Schrenkiella parvulaSp3g07940PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMEDch3-1+View
Schrenkiella parvulaSp4g19660KOG0114//KOG4207 - Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamilych4-6-View
Schrenkiella parvulaSp6g39870PF00098//PF13893 - Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)ch6-6-View
Solanum pennelliiSopen09g001840encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. | arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33) | FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing | LOCATED IN: nuclear speck | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type , Zinc finger, CCHC retroviral-type | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domainSpenn-ch09+View
Solanum pennelliiSopen05g033380encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. | arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33) | FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing | LOCATED IN: nuclear speck | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type , Zinc finger, CCHC retroviral-type | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domainSpenn-ch05+View
Solanum tuberosumPGSC0003DMG400023919Arginine/serine-rich splicing factorST4.03ch09-View
Solanum tuberosumPGSC0003DMG402023504Arginine/serine-rich splicing factorST4.03ch05+View
Selenicereus undatusHund22436Scaffold_33680+View
Trochodendron aralioidesTAR633G0383group2+View
Trochodendron aralioidesTAR623G1333group7-View
Trochodendron aralioidesTAR636G0593group1-View
Theobroma cacaoThecc.05G049000Chromosome_5+View
Tarenaya hasslerianaTHA.LOC104805359serine/arginine-rich splicing factor RS2Z33-like isoform X1NW_010960187.1-View
Tarenaya hasslerianaTHA.LOC104826998serine/arginine-rich splicing factor RS2Z32-like isoform X1NW_010967707.1-View
Trifolium pratenseTPR.G36918Tp57577_TGAC_v2_LG1-View
Tripterygium wilfordiiTWI53G0760NC_052244.1-View
Tripterygium wilfordiiTWI74G0490NC_052234.1+View
Vaccinium macrocarponvmacro20096Similar to RS2Z32: Serine/arginine-rich splicing factor RS2Z32 (Arabidopsis thaliana OX%3D3702)chr5_Vaccinium_macrocarpon_Stevens_v1-View
Vigna mungoVMungo1383G3127CM024070.1+View
Vitis viniferaGSVIVG01025581001chr8+View
Vitis viniferaGSVIVG01032633001chr13-View